© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7057.t1 |
| Gene name | |
| Location | scaffold_20:351683..353363 |
| Strand | - |
| Gene length (bp) | 1680 |
| Transcript length (bp) | 1554 |
| Coding sequence length (bp) | 1554 |
| Protein length (aa) | 518 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00569 | ZZ | Zinc finger, ZZ type | 2.9E-10 | 17 | 61 |
| PF00249 | Myb_DNA-binding | Myb-like DNA-binding domain | 6.1E-10 | 82 | 124 |
| PF04433 | SWIRM | SWIRM domain | 5.1E-08 | 445 | 515 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0008270 | zinc ion binding | Yes |
| GO:0046914 | transition metal ion binding | No |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0046872 | metal ion binding | No |
| GO:0043169 | cation binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 32 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 69.20 | 42.00 | 96.40 |
| 5d_25C | Five days - 25 degrees Celsius | 71.38 | 43.66 | 99.11 |
| 7d_25C | Seven days - 25 degrees Celsius | 70.60 | 43.19 | 98.00 |
| 10d_25C | Ten days - 25 degrees Celsius | 87.55 | 53.31 | 121.79 |
| 7d_15C | Seven days - 15 degrees Celsius | 69.75 | 42.29 | 97.22 |
| 7d_30C | Seven days - 30 degrees Celsius | 73.24 | 44.44 | 102.03 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.927866 | no |
| 3d_25C | 7d_25C | 0.953631 | no |
| 3d_25C | 7d_15C | 0.984350 | no |
| 3d_25C | 7d_30C | 0.862042 | no |
| 3d_25C | 10d_25C | 0.328074 | no |
| 5d_25C | 7d_25C | 0.973209 | no |
| 5d_25C | 7d_15C | 0.946649 | no |
| 5d_25C | 7d_30C | 0.939086 | no |
| 5d_25C | 10d_25C | 0.400368 | no |
| 7d_25C | 7d_15C | 0.974828 | no |
| 7d_25C | 7d_30C | 0.912581 | no |
| 7d_25C | 10d_25C | 0.369450 | no |
| 7d_15C | 7d_30C | 0.880758 | no |
| 7d_15C | 10d_25C | 0.354964 | no |
| 7d_30C | 10d_25C | 0.493502 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7057.t1 MGVIRKKTASRGTEAGTKFHCDVCSIDVTSTVRISCSHPACPEYDLCVPCFSAGKNSKNHDPATHPFQVIEQNSV PIFQADWGADEELLLLEGAEIYGLGSWADIADHIGGYRSKDEVRDHYYNTYVKSVNFPLAARADPDDRALQDSIS KEDFQTRKKRRIEERKDAAKTAPPTTPKQKPTASVPACHEVQGYMPGRLEFETEFLNDAEEAVQHMTFEPGAGFN ENGEPDAETELKMTVVDIYNSRLTARTERKKILFEHNLLDYRKNTALDKKRSKEERDLLNKAKPLARMMNCKDFE DVNKGLEYEHNLRLAISQLQEWRQMGIGDLKAGEKYEQDKQQRVQRLLPQGSFDRFASTRPKQSQLTETPAAAIQ LTTPELPLRLQKAANPHAPADSTEETLNDFDRAFAVDGDAPPPQPAKTKYVVPPLSGMPSWKLDNETAADLHLLT KEEAEVCNVLRLMPKPYLVIKETLLKEAMKQGGNLKKKDARMICKIEGTKTSRIYDFMVHSGWINKA* |
| Coding | >Pro_DTO377G3_2|g7057.t1 ATGGGTGTGATACGCAAGAAGACCGCCTCGCGCGGCACCGAGGCCGGCACCAAGTTCCACTGCGATGTGTGCTCC ATTGATGTTACGTCAACAGTTCGCATCTCGTGCTCGCATCCCGCCTGCCCCGAATATGACCTCTGTGTTCCCTGT TTCTCAGCCGGAAAGAATTCCAAGAACCATGACCCCGCCACACATCCATTCCAAGTGATCGAACAGAACTCAGTC CCCATATTCCAGGCAGATTGGGGTGCCGACGAAGAACTGTTATTGCTGGAAGGCGCCGAAATCTATGGGCTGGGT TCCTGGGCAGACATCGCAGACCACATTGGCGGCTACCGGAGCAAGGATGAAGTGCGAGACCACTACTACAATACA TATGTGAAGAGCGTCAACTTTCCGCTCGCAGCCCGTGCCGATCCAGACGATAGGGCCTTGCAGGATTCGATCTCC AAAGAGGATTTTCAAACACGCAAGAAGCGTCGCATCGAAGAGCGCAAAGATGCAGCCAAGACAGCACCTCCAACC ACACCAAAGCAGAAGCCGACTGCCAGTGTACCGGCGTGTCACGAAGTGCAGGGCTACATGCCGGGACGATTGGAG TTCGAGACCGAGTTCTTGAACGATGCCGAAGAAGCGGTGCAGCACATGACTTTTGAGCCTGGGGCTGGATTCAAT GAAAATGGCGAGCCAGACGCAGAGACCGAGCTCAAGATGACCGTGGTTGACATCTACAACTCCCGCCTGACAGCG CGAACAGAGCGCAAGAAAATCCTCTTCGAGCACAACCTCCTCGACTACCGAAAGAACACCGCCTTAGATAAGAAA CGGTCCAAGGAAGAGCGAGATTTGTTGAACAAAGCAAAGCCACTAGCACGGATGATGAACTGCAAGGACTTTGAA GACGTCAACAAGGGCTTAGAGTACGAGCACAACCTCCGCCTAGCCATCTCCCAGCTTCAAGAATGGCGCCAGATG GGCATCGGTGACCTAAAGGCAGGCGAGAAGTACGAGCAGGATAAGCAACAGCGCGTTCAACGACTGCTTCCTCAA GGATCATTTGACCGTTTTGCCAGCACCCGCCCTAAGCAGTCACAGCTGACAGAGACACCCGCGGCAGCGATTCAG CTTACAACACCTGAACTGCCTCTGCGACTGCAAAAAGCGGCCAATCCACACGCACCAGCGGACTCCACCGAAGAA ACACTGAACGATTTCGATCGCGCCTTCGCTGTCGATGGGGATGCGCCTCCCCCGCAGCCGGCAAAGACGAAATAT GTGGTGCCTCCATTAAGCGGGATGCCGTCGTGGAAGCTGGACAATGAGACTGCTGCCGATCTGCATCTCCTGACC AAGGAAGAGGCAGAAGTATGCAATGTTCTACGCCTGATGCCTAAGCCATATCTGGTCATCAAGGAGACACTGTTG AAGGAAGCAATGAAGCAGGGCGGCAACCTGAAGAAGAAAGATGCACGGATGATTTGCAAGATTGAGGGCACCAAA ACTAGCCGCATTTATGATTTCATGGTACACAGTGGTTGGATCAACAAGGCGTAG |
| Transcript | >Pro_DTO377G3_2|g7057.t1 ATGGGTGTGATACGCAAGAAGACCGCCTCGCGCGGCACCGAGGCCGGCACCAAGTTCCACTGCGATGTGTGCTCC ATTGATGTTACGTCAACAGTTCGCATCTCGTGCTCGCATCCCGCCTGCCCCGAATATGACCTCTGTGTTCCCTGT TTCTCAGCCGGAAAGAATTCCAAGAACCATGACCCCGCCACACATCCATTCCAAGTGATCGAACAGAACTCAGTC CCCATATTCCAGGCAGATTGGGGTGCCGACGAAGAACTGTTATTGCTGGAAGGCGCCGAAATCTATGGGCTGGGT TCCTGGGCAGACATCGCAGACCACATTGGCGGCTACCGGAGCAAGGATGAAGTGCGAGACCACTACTACAATACA TATGTGAAGAGCGTCAACTTTCCGCTCGCAGCCCGTGCCGATCCAGACGATAGGGCCTTGCAGGATTCGATCTCC AAAGAGGATTTTCAAACACGCAAGAAGCGTCGCATCGAAGAGCGCAAAGATGCAGCCAAGACAGCACCTCCAACC ACACCAAAGCAGAAGCCGACTGCCAGTGTACCGGCGTGTCACGAAGTGCAGGGCTACATGCCGGGACGATTGGAG TTCGAGACCGAGTTCTTGAACGATGCCGAAGAAGCGGTGCAGCACATGACTTTTGAGCCTGGGGCTGGATTCAAT GAAAATGGCGAGCCAGACGCAGAGACCGAGCTCAAGATGACCGTGGTTGACATCTACAACTCCCGCCTGACAGCG CGAACAGAGCGCAAGAAAATCCTCTTCGAGCACAACCTCCTCGACTACCGAAAGAACACCGCCTTAGATAAGAAA CGGTCCAAGGAAGAGCGAGATTTGTTGAACAAAGCAAAGCCACTAGCACGGATGATGAACTGCAAGGACTTTGAA GACGTCAACAAGGGCTTAGAGTACGAGCACAACCTCCGCCTAGCCATCTCCCAGCTTCAAGAATGGCGCCAGATG GGCATCGGTGACCTAAAGGCAGGCGAGAAGTACGAGCAGGATAAGCAACAGCGCGTTCAACGACTGCTTCCTCAA GGATCATTTGACCGTTTTGCCAGCACCCGCCCTAAGCAGTCACAGCTGACAGAGACACCCGCGGCAGCGATTCAG CTTACAACACCTGAACTGCCTCTGCGACTGCAAAAAGCGGCCAATCCACACGCACCAGCGGACTCCACCGAAGAA ACACTGAACGATTTCGATCGCGCCTTCGCTGTCGATGGGGATGCGCCTCCCCCGCAGCCGGCAAAGACGAAATAT GTGGTGCCTCCATTAAGCGGGATGCCGTCGTGGAAGCTGGACAATGAGACTGCTGCCGATCTGCATCTCCTGACC AAGGAAGAGGCAGAAGTATGCAATGTTCTACGCCTGATGCCTAAGCCATATCTGGTCATCAAGGAGACACTGTTG AAGGAAGCAATGAAGCAGGGCGGCAACCTGAAGAAGAAAGATGCACGGATGATTTGCAAGATTGAGGGCACCAAA ACTAGCCGCATTTATGATTTCATGGTACACAGTGGTTGGATCAACAAGGCGTAG |
| Gene | >Pro_DTO377G3_2|g7057.t1 ATGGGTGTGATACGCAAGAAGACCGCCTCGCGCGGCACCGAGGCCGGCACCAAGTTCCACTGCGATGTGTGCTCC ATTGATGTTACGTCAACAGTAAGTCTTCATGTCTGTCATGGCCATTTAAAGGTCTGTTGTTTTGTTCAGAGACTA ATGCGATTCCATCGCATAGGTTCGCATCTCGTGCTCGCATCCCGCCTGCCCCGAATATGACCTCTGTGTTCCCTG TTTCTCAGCCGGAAAGAATTCCAAGAACCATGACCCCGCCACACATCCATTCCAAGTGATCGAACAGAACTCAGT CCCCATATTCCAGGCAGATTGGGGTGCCGACGAAGAACTGTTATTGCTGGAAGGCGCCGAAATCTATGGGCTGGG TTCCTGGGCAGACATCGCAGACCACATTGGCGGCTACCGGAGCAAGGATGAAGTGCGAGACCACTACTACAATAC ATATGTGAAGAGCGTCAACTTTCCGCTCGCAGCCCGTGCCGATCCAGACGATAGGGCCTTGCAGGATTCGATCTC CAAAGAGGATTTTCAAACACGCAAGAAGCGTCGCATCGAAGAGCGCAAAGATGCAGCCAAGACAGCACCTCCAAC CACACCAAAGCAGAAGCCGACTGCCAGTGTACCGGCGTGTCACGAAGTGCAGGGCTACATGCCGGGACGATTGGA GTTCGAGACCGAGTTCTTGAACGATGCCGAAGAAGCGGTGCAGCACATGACTTTTGAGCCTGGGGCTGGATTCAA TGAAAATGGCGAGCCAGACGCAGAGACCGAGCTCAAGATGACCGTGGTTGACATCTACAACTCCCGCCTGACAGC GCGAACAGAGCGCAAGAAAATCCTCTTCGAGCACAACCTCCTCGACTACCGAAAGAACACCGCCTTAGATAAGAA ACGGTCCAAGGAAGAGCGAGATTTGTTGAACAAAGCAAAGCCACTAGCACGGATGATGAACTGCAAGGACTTTGA AGACGTCAACAAGGGCTTAGAGTACGAGCACAACCTCCGCCTAGCCATCTCCCAGCTTCAAGAATGGCGCCAGAT GGGCATCGGTGACCTAAAGGCAGGCGAGAAGTACGAGCAGGATAAGCAACAGCGCGTTCAACGACTGCTTCCTCA AGGATCATTTGACCGTTTTGCCAGCACCCGCCCTAAGCAGTCACAGCTGACAGAGACACCCGCGGCAGCGATTCA GCTTACAACACCTGAACTGCCTCTGCGACTGCAAAAAGCGGCCAATCCACACGCACCAGCGGACTCCACCGAAGA AACACTGAACGATTTCGATCGCGCCTTCGCTGTCGATGGGGATGCGCCTCCCCCGCAGCCGGCAAAGACGAAATA TGTGGTGCCTCCATTAAGCGGGATGCCGTCGTGGAAGCTGGACAATGAGACTGCTGCCGATCTGCATCTCCTGAC CAAGGAAGAGGCAGAAGTATGCAATGTTCTACGCCTGATGCCTAAGCCATATCTGGTCATCAAGGAGACACTGTT GAAGGAAGCAATGAAGCAGGGCGGCAACCTGAAGAAGAAAGATGCACGGATGATTTGCAAGGTATGTTTCTCACT CGACTCTTGCATGCGGACTCTTACTGATTCTGTTAGATTGAGGGCACCAAAACTAGCCGCATTTATGATTTCATG GTACACAGTGGTTGGATCAACAAGGCGTAG |