Penicillium roqueforti LCP96 04111

General Properties

Protein ID	Pro_DTO377G3_2\|g7050.t1
Gene name
Location	scaffold_20:333420..335171
Strand	+
Gene length (bp)	1751
Transcript length (bp)	1338
Coding sequence length (bp)	1338
Protein length (aa)	446

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF04139	Rad9	Rad9	6.7E-51	19	284

GO

GO Term	Description	Terminal node
GO:0000077	DNA damage checkpoint signaling	Yes
GO:0030896	checkpoint clamp complex	Yes
GO:0065007	biological regulation	No
GO:0140513	nuclear protein-containing complex	No
GO:0051726	regulation of cell cycle	No
GO:0033554	cellular response to stress	No
GO:1901987	regulation of cell cycle phase transition	No
GO:0000075	cell cycle checkpoint signaling	No
GO:0008150	biological_process	No
GO:0005575	cellular_component	No
GO:0050789	regulation of biological process	No
GO:0031570	DNA integrity checkpoint signaling	No
GO:0032991	protein-containing complex	No
GO:1901988	negative regulation of cell cycle phase transition	No
GO:0048519	negative regulation of biological process	No
GO:0010948	negative regulation of cell cycle process	No
GO:0035556	intracellular signal transduction	No
GO:0045786	negative regulation of cell cycle	No
GO:0006950	response to stress	No
GO:0006974	cellular response to DNA damage stimulus	No
GO:0007165	signal transduction	No
GO:0050896	response to stimulus	No
GO:0048523	negative regulation of cellular process	No
GO:0042770	signal transduction in response to DNA damage	No
GO:0051716	cellular response to stimulus	No
GO:0050794	regulation of cellular process	No
GO:0010564	regulation of cell cycle process	No
GO:0009987	cellular process	No

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
Yes	1 - 20	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
3d_25C	Three days - 25 degrees Celsius	45.21	26.35	64.06
5d_25C	Five days - 25 degrees Celsius	50.65	29.83	71.47
7d_25C	Seven days - 25 degrees Celsius	52.87	31.11	74.63
10d_25C	Ten days - 25 degrees Celsius	50.70	29.87	71.53
7d_15C	Seven days - 15 degrees Celsius	67.56	40.03	95.08
7d_30C	Seven days - 30 degrees Celsius	44.91	26.08	63.74

Differential expression

Label1	Label2	Q-value	Significant difference
3d_25C	5d_25C	0.705470	no
3d_25C	7d_25C	0.577703	no
3d_25C	7d_15C	0.072335	no
3d_25C	7d_30C	0.986640	no
3d_25C	10d_25C	0.703545	no
5d_25C	7d_25C	0.903475	no
5d_25C	7d_15C	0.224791	no
5d_25C	7d_30C	0.686874	no
5d_25C	10d_25C	0.997772	no
7d_25C	7d_15C	0.324813	no
7d_25C	7d_30C	0.558907	no
7d_25C	10d_25C	0.903207	no
7d_15C	7d_30C	0.068107	no
7d_15C	10d_25C	0.229033	no
7d_30C	10d_25C	0.686048	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Pro_DTO377G3_2\|g7050.t1 MTSLSLSLGPLALVRLHDALICLSKFSETVAIEAEPDILRLSALNSTKTGFASFAFEKGVFFEAYSFNSSSNGRS GSVSLDRFFCQIYNKALLSIFRGKTDRNKDTAVERCDMELHEDLQQAECRLTVKMICGLGVIKSYKLTYEPAAIQ HAIFDKSRATSMWTADPRFLKQLIEHFSLSAEQLDMYSDSGRAVFTSFTTKITEGKEVLKHPVHTSVAADTRDFQ EYLVEENMHVAINLKDFKAVVAHAETANASVTARYTRPCKPLQLEYGFEGINAEFTVMTRGQADSEDAPTSTRAS IPRQTPVPIPISASRSRDTRPSVTTNTQMPPPPPRTRSIRPLNGSSTQENLSQRASADRPAASGLSMEFDSLFVP ADDDRQWDEMKDEEEPQDILGWDASGTQDAFGATIRDAEPALLREDEPNDDTGLPPTQRFSQVRQYGFFD*
Coding	>Pro_DTO377G3_2\|g7050.t1 ATGACGTCGCTCTCATTGTCGTTAGGCCCGTTAGCCTTGGTCCGGCTCCACGACGCCTTAATATGCCTGTCCAAA TTCAGCGAAACAGTCGCCATCGAAGCAGAGCCTGATATCCTCCGCCTCAGTGCGCTCAATTCTACCAAGACGGGG TTTGCCTCCTTCGCGTTCGAGAAGGGGGTATTCTTTGAGGCGTATTCTTTCAATTCCAGCAGTAATGGCAGAAGT GGCAGTGTTTCGCTGGACCGATTCTTCTGCCAGATCTATAACAAAGCACTTCTCTCCATATTTCGTGGGAAAACT GACAGAAACAAGGACACAGCCGTTGAACGCTGTGACATGGAATTGCATGAAGATCTACAGCAAGCCGAGTGTAGA CTGACAGTGAAAATGATCTGTGGACTAGGCGTGATCAAGTCATATAAATTGACTTACGAACCAGCGGCAATTCAG CACGCCATCTTCGACAAATCCAGAGCTACCAGCATGTGGACAGCTGATCCACGGTTCCTCAAGCAGCTCATTGAG CACTTCAGCTTATCTGCCGAGCAGCTGGACATGTACTCCGATTCCGGCAGAGCGGTGTTCACGAGTTTTACAACA AAGATCACCGAAGGCAAGGAAGTACTAAAACACCCTGTCCACACATCCGTAGCAGCAGACACGCGCGACTTCCAA GAGTACTTGGTCGAAGAGAACATGCACGTCGCGATCAACCTGAAAGACTTCAAAGCCGTAGTTGCGCACGCCGAA ACGGCAAACGCCAGCGTAACAGCACGGTACACCCGACCCTGCAAGCCTCTGCAGCTGGAGTACGGATTTGAAGGC ATCAACGCAGAATTCACAGTCATGACCCGCGGCCAGGCAGATAGCGAAGACGCCCCGACGTCAACACGAGCGTCA ATCCCACGGCAAACGCCCGTGCCTATCCCAATCTCAGCGAGCAGGTCGCGTGATACTCGCCCATCGGTGACGACA AATACGCAGATGCCCCCACCGCCACCGCGAACCAGATCCATCCGTCCTCTCAATGGGTCGTCTACGCAGGAGAAT CTGAGCCAGAGGGCTAGCGCAGATCGGCCGGCGGCGTCTGGGCTTTCGATGGAATTCGATAGCCTTTTCGTGCCT GCTGATGATGACCGGCAGTGGGATGAGATGAAGGACGAAGAGGAGCCGCAGGATATTCTTGGATGGGATGCGTCG GGAACACAGGACGCATTCGGGGCAACTATTCGCGATGCGGAGCCTGCCTTGTTGAGAGAGGATGAGCCAAACGAT GATACGGGTCTCCCGCCAACACAACGTTTTTCTCAGGTTCGCCAATATGGTTTCTTCGACTGA
Transcript	>Pro_DTO377G3_2\|g7050.t1 ATGACGTCGCTCTCATTGTCGTTAGGCCCGTTAGCCTTGGTCCGGCTCCACGACGCCTTAATATGCCTGTCCAAA TTCAGCGAAACAGTCGCCATCGAAGCAGAGCCTGATATCCTCCGCCTCAGTGCGCTCAATTCTACCAAGACGGGG TTTGCCTCCTTCGCGTTCGAGAAGGGGGTATTCTTTGAGGCGTATTCTTTCAATTCCAGCAGTAATGGCAGAAGT GGCAGTGTTTCGCTGGACCGATTCTTCTGCCAGATCTATAACAAAGCACTTCTCTCCATATTTCGTGGGAAAACT GACAGAAACAAGGACACAGCCGTTGAACGCTGTGACATGGAATTGCATGAAGATCTACAGCAAGCCGAGTGTAGA CTGACAGTGAAAATGATCTGTGGACTAGGCGTGATCAAGTCATATAAATTGACTTACGAACCAGCGGCAATTCAG CACGCCATCTTCGACAAATCCAGAGCTACCAGCATGTGGACAGCTGATCCACGGTTCCTCAAGCAGCTCATTGAG CACTTCAGCTTATCTGCCGAGCAGCTGGACATGTACTCCGATTCCGGCAGAGCGGTGTTCACGAGTTTTACAACA AAGATCACCGAAGGCAAGGAAGTACTAAAACACCCTGTCCACACATCCGTAGCAGCAGACACGCGCGACTTCCAA GAGTACTTGGTCGAAGAGAACATGCACGTCGCGATCAACCTGAAAGACTTCAAAGCCGTAGTTGCGCACGCCGAA ACGGCAAACGCCAGCGTAACAGCACGGTACACCCGACCCTGCAAGCCTCTGCAGCTGGAGTACGGATTTGAAGGC ATCAACGCAGAATTCACAGTCATGACCCGCGGCCAGGCAGATAGCGAAGACGCCCCGACGTCAACACGAGCGTCA ATCCCACGGCAAACGCCCGTGCCTATCCCAATCTCAGCGAGCAGGTCGCGTGATACTCGCCCATCGGTGACGACA AATACGCAGATGCCCCCACCGCCACCGCGAACCAGATCCATCCGTCCTCTCAATGGGTCGTCTACGCAGGAGAAT CTGAGCCAGAGGGCTAGCGCAGATCGGCCGGCGGCGTCTGGGCTTTCGATGGAATTCGATAGCCTTTTCGTGCCT GCTGATGATGACCGGCAGTGGGATGAGATGAAGGACGAAGAGGAGCCGCAGGATATTCTTGGATGGGATGCGTCG GGAACACAGGACGCATTCGGGGCAACTATTCGCGATGCGGAGCCTGCCTTGTTGAGAGAGGATGAGCCAAACGAT GATACGGGTCTCCCGCCAACACAACGTTTTTCTCAGGTTCGCCAATATGGTTTCTTCGACTGA
Gene	>Pro_DTO377G3_2\|g7050.t1 ATGACGTCGCTCTCATTGTCGTTAGGCCCGTTAGCCTTGGTCCGGCTCCACGACGCCTTAATATGCCTGTCCAAA TTCAGCGAAACAGTCGCCATCGAAGCAGAGCCTGATATCGTAAGTTATCTTTCTTAACTTGGGGTGTTTAGTTCA GTTCAAGGTTTAGAAGCCAGCAGATGAAATGTTCTGGCTAACCGTGCTCCAGCTCCGCCTCAGTGCGCTCAATTC TACCAAGACGGGGTTTGCCTCCTTCGCGTTCGAGAAGGGGGTATTCTTTGAGGCGTATTCTTTCAATTCCAGCAG TAATGGCAGAAGTGGCAGTGTTTCGCTGGACCGATTCTTCTGCCAGATCTATAACAAAGTGAGTATAGACTTTTT TATCCTTGGAGCTGTACCATACCGCATATTTACCGTGGTTATCTTCCTTACTTTATGCTGATATAGAATACAGGC ACTTCTCTCCATATTTCGTGGGAAAACTGACAGAAACAAGGACACAGCCGTTGAACGCTGTGACATGGAATTGCA TGAAGATCTACAGCAAGCCGAGTGTAGACTGACAGTGAAAATGATCTGTGGACTAGGTAAGATACCCTTGCATAT ATCCATCTTTTGGCTTCACTGCACATCTCTGACAATTTATCTAGGCGTGATCAAGTCATATAAATTGACTTACGA ACCAGCGGCAATTCAGCACGCCATCTTCGACAAATCCAGAGCTACCAGCATGTGGACAGCTGATCCACGGTTCCT CAAGCAGCTCATTGAGCACTTCAGCTTATCTGCCGAGCAGCTGGACATGTACTCCGATTCCGGCAGAGCGGTGTT CACGAGTTTTACAACAAAGATCACCGAAGGCAAGGGTATGTCGAGTTCGCCTCCATCAAATCTCCAATGTCTAGT TAACTAACAACCCAAACAGAAGTACTAAAACACCCTGTCCACACATCCGTAGCAGCAGACACGCGCGACTTCCAA GAGTACTTGGTCGAAGAGAACATGCACGTCGCGATCAACCTGAAAGACTTCAAAGCCGTAGTTGCGCACGCCGAA ACGGCAAACGCCAGCGTAACAGCACGGTACACCCGACCCTGCAAGCCTCTGCAGCTGGAGTACGGATTTGAAGGC ATCAACGCAGAATTCACAGTCATGACCCGCGGCCAGGCAGATAGCGAAGACGCCCCGACGTCAACACGAGCGTCA ATCCCACGGCAAACGCCCGTGCCTATCCCAATCTCAGCGAGCAGGTCGCGTGATACTCGCCCATCGGTGACGACA AATACGCAGATGCCCCCACCGCCACCGCGAACCAGATCCATCCGTCCTCTCAATGGGTCGTCTACGCAGGAGAAT CTGAGCCAGAGGGCTAGCGCAGATCGGCCGGCGGCGTCTGGGCTTTCGATGGAATTCGATAGCCTTTTCGTGCCT GCTGATGATGACCGGCAGTGGGATGAGATGAAGGACGAAGAGGAGCCGCAGGATATTCTTGGATGGGATGCGTCG GGAACACAGGTATGTGGTTTTCTTTCTTCCCCAGTGGGTATAGTGGGTGGCTAAACAAACGCGCAGGACGCATTC GGGGCAACTATTCGCGATGCGGAGCCTGCCTTGTTGAGAGAGGATGAGCCAAACGATGATACGGGTCTCCCGCCA ACACAACGTTTTTCTCAGGTATGTGAATTCTGGCTCTTGCGACACTTTGATAGGCGTATGCTGATAGTTGATAGG TTCGCCAATATGGTTTCTTCGACTGA

Fungal Genomics

General Properties

PFAM Domains

GO

SignalP

Transmembrane Domains

Transcription Factor Class

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Sequences