© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7025.t1 |
| Gene name | |
| Location | scaffold_20:262455..262969 |
| Strand | + |
| Gene length (bp) | 514 |
| Transcript length (bp) | 468 |
| Coding sequence length (bp) | 468 |
| Protein length (aa) | 156 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF10178 | PAC3 | Proteasome assembly chaperone 3 | 1.1E-06 | 47 | 152 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0043248 | proteasome assembly | Yes |
| GO:0008150 | biological_process | No |
| GO:0043933 | protein-containing complex organization | No |
| GO:0009987 | cellular process | No |
| GO:0016043 | cellular component organization | No |
| GO:0065003 | protein-containing complex assembly | No |
| GO:0071840 | cellular component organization or biogenesis | No |
| GO:0022607 | cellular component assembly | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 35 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 40.11 | 15.80 | 64.43 |
| 5d_25C | Five days - 25 degrees Celsius | 37.03 | 14.08 | 59.98 |
| 7d_25C | Seven days - 25 degrees Celsius | 34.10 | 12.06 | 56.15 |
| 10d_25C | Ten days - 25 degrees Celsius | 35.80 | 13.44 | 58.16 |
| 7d_15C | Seven days - 15 degrees Celsius | 34.58 | 12.36 | 56.79 |
| 7d_30C | Seven days - 30 degrees Celsius | 30.09 | 10.67 | 49.50 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.872751 | no |
| 3d_25C | 7d_25C | 0.728700 | no |
| 3d_25C | 7d_15C | 0.754125 | no |
| 3d_25C | 7d_30C | 0.481809 | no |
| 3d_25C | 10d_25C | 0.810542 | no |
| 5d_25C | 7d_25C | 0.874476 | no |
| 5d_25C | 7d_15C | 0.896862 | no |
| 5d_25C | 7d_30C | 0.635666 | no |
| 5d_25C | 10d_25C | 0.951510 | no |
| 7d_25C | 7d_15C | 0.982293 | no |
| 7d_25C | 7d_30C | 0.806131 | no |
| 7d_25C | 10d_25C | 0.929249 | no |
| 7d_15C | 7d_30C | 0.781541 | no |
| 7d_15C | 10d_25C | 0.952872 | no |
| 7d_30C | 10d_25C | 0.701138 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7025.t1 MAGSFDTSSLQDSLNLPFPATTKQVAGLVNGVQTDVMIMSFSDKIMVTISQAGRLAHWLHVPMENQNPGTEGMHT LAEGDDALLPLKSLTTTTLLGGYSPGQDTTGQLLARQIATAIAMKTPSEKRLLLVGLGLGKSTADRDSFFAIVDL VLQCL* |
| Coding | >Pro_DTO377G3_2|g7025.t1 ATGGCTGGATCTTTTGATACAAGCTCTCTGCAGGATTCCCTCAACCTGCCATTTCCTGCTACCACTAAGCAGGTG GCAGGGTTAGTCAATGGTGTACAAACAGATGTGATGATAATGAGCTTTAGCGATAAAATCATGGTCACAATTTCA CAAGCAGGACGACTAGCGCACTGGTTGCATGTACCAATGGAGAATCAGAACCCAGGCACTGAGGGCATGCACACT CTCGCTGAGGGCGATGATGCTCTGTTGCCCCTTAAAAGTCTAACCACCACCACTTTACTAGGTGGCTATTCTCCT GGACAAGATACGACGGGCCAACTACTTGCTCGTCAGATTGCTACAGCTATTGCAATGAAAACACCTAGTGAAAAG AGACTACTCCTCGTTGGCCTTGGACTTGGCAAATCAACTGCTGATAGAGATTCATTCTTCGCTATTGTTGACCTG GTTCTGCAATGTCTATGA |
| Transcript | >Pro_DTO377G3_2|g7025.t1 ATGGCTGGATCTTTTGATACAAGCTCTCTGCAGGATTCCCTCAACCTGCCATTTCCTGCTACCACTAAGCAGGTG GCAGGGTTAGTCAATGGTGTACAAACAGATGTGATGATAATGAGCTTTAGCGATAAAATCATGGTCACAATTTCA CAAGCAGGACGACTAGCGCACTGGTTGCATGTACCAATGGAGAATCAGAACCCAGGCACTGAGGGCATGCACACT CTCGCTGAGGGCGATGATGCTCTGTTGCCCCTTAAAAGTCTAACCACCACCACTTTACTAGGTGGCTATTCTCCT GGACAAGATACGACGGGCCAACTACTTGCTCGTCAGATTGCTACAGCTATTGCAATGAAAACACCTAGTGAAAAG AGACTACTCCTCGTTGGCCTTGGACTTGGCAAATCAACTGCTGATAGAGATTCATTCTTCGCTATTGTTGACCTG GTTCTGCAATGTCTATGA |
| Gene | >Pro_DTO377G3_2|g7025.t1 ATGGCTGGATCTTTTGATACAAGCTCTCTGCAGGATTCCCTCAACCTGCCATTTCCTGCTACCACTAAGCAGGTG GCAGGGTTAGTCAATGGTGTACAAACAGATGTGATGATAATGAGCTTTAGCGATAAAATCATGGTCACAATTTCA CAAGCAGGACGACTAGCGCACTGGGTATGTCTTGCCCTTGCTTTCAGAAAACATCGCTAATTGTATATAGTTGCA TGTACCAATGGAGAATCAGAACCCAGGCACTGAGGGCATGCACACTCTCGCTGAGGGCGATGATGCTCTGTTGCC CCTTAAAAGTCTAACCACCACCACTTTACTAGGTGGCTATTCTCCTGGACAAGATACGACGGGCCAACTACTTGC TCGTCAGATTGCTACAGCTATTGCAATGAAAACACCTAGTGAAAAGAGACTACTCCTCGTTGGCCTTGGACTTGG CAAATCAACTGCTGATAGAGATTCATTCTTCGCTATTGTTGACCTGGTTCTGCAATGTCTATGA |