© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7022.t1 |
| Gene name | |
| Location | scaffold_20:253334..256177 |
| Strand | + |
| Gene length (bp) | 2843 |
| Transcript length (bp) | 2685 |
| Coding sequence length (bp) | 2685 |
| Protein length (aa) | 895 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00806 | PUF | Pumilio-family RNA binding repeat | 2.5E-10 | 481 | 514 |
| PF00806 | PUF | Pumilio-family RNA binding repeat | 1.2E-08 | 517 | 548 |
| PF00806 | PUF | Pumilio-family RNA binding repeat | 2.4E-10 | 553 | 586 |
| PF00806 | PUF | Pumilio-family RNA binding repeat | 8.8E-06 | 590 | 620 |
| PF00806 | PUF | Pumilio-family RNA binding repeat | 1.0E-12 | 625 | 659 |
| PF00806 | PUF | Pumilio-family RNA binding repeat | 2.1E-06 | 668 | 694 |
| PF00806 | PUF | Pumilio-family RNA binding repeat | 9.7E-04 | 698 | 728 |
| PF00806 | PUF | Pumilio-family RNA binding repeat | 1.5E-06 | 743 | 773 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 41 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 82.88 | 50.38 | 115.39 |
| 5d_25C | Five days - 25 degrees Celsius | 69.44 | 42.24 | 96.64 |
| 7d_25C | Seven days - 25 degrees Celsius | 70.30 | 42.71 | 97.89 |
| 10d_25C | Ten days - 25 degrees Celsius | 93.29 | 56.59 | 130.00 |
| 7d_15C | Seven days - 15 degrees Celsius | 60.97 | 36.03 | 85.91 |
| 7d_30C | Seven days - 30 degrees Celsius | 101.60 | 60.53 | 142.67 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.479306 | no |
| 3d_25C | 7d_25C | 0.517162 | no |
| 3d_25C | 7d_15C | 0.176097 | no |
| 3d_25C | 7d_30C | 0.417860 | no |
| 3d_25C | 10d_25C | 0.663643 | no |
| 5d_25C | 7d_25C | 0.973417 | no |
| 5d_25C | 7d_15C | 0.635009 | no |
| 5d_25C | 7d_30C | 0.081872 | no |
| 5d_25C | 10d_25C | 0.182419 | no |
| 7d_25C | 7d_15C | 0.596642 | no |
| 7d_25C | 7d_30C | 0.092527 | no |
| 7d_25C | 10d_25C | 0.200317 | no |
| 7d_15C | 7d_30C | 0.014971 | yes |
| 7d_15C | 10d_25C | 0.041798 | yes |
| 7d_30C | 10d_25C | 0.779158 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7022.t1 MAANATSVHNARSNRASNMGSSGMNDRNRSSQSNSVGKGFGASKTSWKNNIWGDSNLGGFGDEQHLGETAFEGKS GSGSLLSTSESDGWSGRANLPWSTVNTNPSFQNRGLATSPTQIRANDRSAPALNEASDGSYFALPRTTGTASQRP YLNTSSEGVSPSGEGLTFGGFTGRRQMNSTGLGGSPVGATFPVKPGFSNPLDAGSGDGMGTSMGMPSLGSGIAEH ISPTQGRSGLSHASHNSASYTTQRPTHSAHPSFYSDNHSIDGRYSGGSMDLNASFNKLQLNEANYASQAAQRPSF IPHASFDGSFPRGKYQNNEDTYQALGYTAEAAQEMHLAYQARTRAANTGSISPSDYARMDSPIYPGVDGGAQYRN AAPSESQVAAFERRLRNFQEQELAQGSSRLQYPPSFDFQAYQASRMNAISGFYPVGHLSGLGAAALVSRTQREHD PTQVVRSPLLEEFRANSKGNKRYELKDIYNHVVEFSGDQHGSRFIQQKLETANSDEKEQVFREIQPNCLQLMTDV FGNYVVQKLFEHGNQTQKKILANQMRGHVLALSTQMYGCRVVQKALEHILTDQQAVMVKELENHVLKCVRDQNGN HVIQKAIERVPSEHVQFIINAFRGQVNRLAAHPYGCRVIQRMLEHCQEVDRQSILAELHACTSNLIPDQFGNYVI QHVIENGDEKDRTRMIDIVMGQLLAYSKHKFASNVVEKSIEFGAEHERIHIISTLTSSNDRGESPLLGLMRDQYG NYVIQKVLGQLKDAEREALIDQIKPLLSQLKKFSYGKQIVAIEKLIFDPNSPATVPLSHPTSTTPPHSHKSSPQP AKRSIPTTEQPRAPFMGNAPPTPPPTDAQTTVDTTLESKGLAKSTVTSVSSPETGNTGVTVPVDVTSAH* |
| Coding | >Pro_DTO377G3_2|g7022.t1 ATGGCCGCGAATGCAACCAGCGTACACAACGCACGATCGAACAGAGCGTCCAACATGGGTTCATCCGGGATGAAC GACCGCAACCGCAGCTCACAAAGCAACAGTGTCGGTAAAGGTTTCGGTGCTAGTAAGACTAGCTGGAAGAACAAC ATCTGGGGTGACTCCAACCTAGGAGGATTCGGAGATGAACAACACCTCGGCGAGACTGCATTCGAAGGAAAATCT GGATCTGGTTCCCTTCTCTCTACATCAGAGTCAGACGGCTGGTCGGGACGTGCTAACCTGCCTTGGAGCACTGTC AACACCAACCCCTCCTTCCAGAATAGAGGCCTTGCCACATCCCCCACCCAGATTCGTGCAAATGACCGCAGTGCT CCTGCTCTCAACGAAGCTAGTGATGGCTCTTACTTCGCTCTACCTCGCACCACTGGGACCGCGAGCCAGCGCCCC TACCTCAACACTAGTTCGGAGGGTGTATCTCCATCCGGAGAAGGCCTCACCTTCGGAGGATTTACTGGTCGACGA CAGATGAACTCAACCGGTCTCGGTGGTAGCCCTGTGGGAGCGACTTTCCCTGTGAAGCCTGGATTCTCGAACCCT CTCGATGCTGGAAGCGGAGATGGAATGGGTACTTCAATGGGCATGCCATCGCTGGGATCTGGAATTGCCGAGCAC ATCTCTCCAACACAGGGCCGCAGCGGCCTATCACACGCGTCTCACAACTCCGCCTCTTACACTACTCAACGACCC ACTCACTCAGCTCATCCTTCCTTCTACTCCGACAATCACAGCATCGATGGCCGCTACAGCGGTGGCTCCATGGAC CTCAACGCCAGCTTTAACAAGCTACAGCTCAACGAAGCTAACTATGCCTCCCAAGCGGCCCAGCGACCCTCGTTT ATTCCCCATGCTTCCTTTGATGGCTCCTTCCCGCGCGGAAAGTATCAGAACAACGAAGACACTTACCAGGCACTG GGATACACCGCAGAGGCTGCGCAGGAGATGCACCTTGCTTACCAGGCACGAACCAGAGCTGCGAACACCGGCTCC ATCTCACCCTCCGACTATGCCCGCATGGATAGCCCCATCTATCCCGGCGTGGACGGGGGTGCTCAGTATCGCAAT GCAGCTCCGAGTGAAAGCCAAGTGGCAGCCTTTGAGCGCAGACTCCGAAACTTCCAGGAGCAGGAGCTTGCCCAA GGTTCCTCGCGATTGCAGTACCCTCCTTCTTTTGACTTCCAAGCATACCAGGCTTCTCGCATGAATGCAATCTCT GGATTCTACCCAGTAGGTCATCTTAGTGGCCTCGGTGCCGCTGCTCTGGTCTCACGCACTCAACGCGAGCATGAT CCTACCCAGGTTGTGCGCAGCCCTCTCCTAGAAGAGTTCAGGGCCAATAGCAAGGGCAACAAGCGCTACGAGTTG AAGGACATCTACAACCATGTGGTCGAGTTTAGTGGTGACCAGCACGGCTCTCGCTTCATTCAACAGAAGCTTGAG ACCGCGAACAGTGACGAGAAGGAGCAGGTGTTCCGGGAGATCCAGCCCAACTGCCTTCAGTTGATGACCGATGTC TTCGGCAACTACGTCGTGCAGAAATTGTTCGAGCATGGAAACCAGACTCAGAAGAAGATTTTGGCCAACCAGATG CGCGGCCATGTTCTGGCCCTGTCGACCCAGATGTATGGATGCCGAGTAGTCCAGAAGGCCCTGGAACACATCCTC ACTGACCAGCAAGCTGTGATGGTCAAGGAACTGGAGAACCATGTCCTCAAGTGTGTTCGTGATCAGAACGGCAAC CATGTCATCCAGAAGGCCATTGAGCGTGTCCCTTCGGAGCATGTCCAGTTCATCATCAATGCGTTCCGCGGTCAG GTCAACAGACTGGCCGCCCATCCTTATGGCTGCCGTGTCATTCAGAGAATGCTTGAGCACTGCCAGGAGGTCGAC CGCCAGTCCATTCTGGCCGAGCTTCATGCCTGCACTTCCAATCTGATCCCTGATCAGTTCGGCAACTATGTCATC CAGCATGTTATCGAGAACGGCGACGAGAAGGACCGTACTCGCATGATTGACATCGTTATGGGACAGCTCCTGGCC TACTCCAAGCATAAGTTTGCTAGCAACGTGGTTGAGAAGAGCATTGAGTTCGGTGCAGAACATGAGCGTATCCAC ATCATCAGTACTCTAACCTCTTCGAACGACCGCGGCGAGAGCCCTCTCCTTGGTCTCATGCGTGACCAGTATGGC AATTATGTCATTCAAAAAGTCTTGGGCCAATTGAAGGATGCCGAACGTGAAGCTCTCATCGACCAGATCAAGCCC CTTCTCAGCCAGCTCAAGAAGTTCAGCTATGGAAAGCAGATTGTCGCGATCGAGAAGCTCATTTTTGACCCCAAC TCTCCTGCGACCGTACCTCTGTCTCACCCCACCTCTACCACTCCTCCCCACTCCCACAAATCCTCCCCGCAACCC GCCAAGCGCTCAATCCCGACTACTGAGCAGCCCCGGGCGCCTTTCATGGGCAACGCTCCACCTACTCCTCCCCCG ACGGATGCTCAGACCACCGTCGATACCACCCTCGAGTCGAAGGGCCTCGCCAAGAGCACGGTGACCTCGGTTTCG AGTCCCGAGACAGGCAACACCGGTGTTACCGTCCCGGTCGATGTCACCAGTGCTCATTAA |
| Transcript | >Pro_DTO377G3_2|g7022.t1 ATGGCCGCGAATGCAACCAGCGTACACAACGCACGATCGAACAGAGCGTCCAACATGGGTTCATCCGGGATGAAC GACCGCAACCGCAGCTCACAAAGCAACAGTGTCGGTAAAGGTTTCGGTGCTAGTAAGACTAGCTGGAAGAACAAC ATCTGGGGTGACTCCAACCTAGGAGGATTCGGAGATGAACAACACCTCGGCGAGACTGCATTCGAAGGAAAATCT GGATCTGGTTCCCTTCTCTCTACATCAGAGTCAGACGGCTGGTCGGGACGTGCTAACCTGCCTTGGAGCACTGTC AACACCAACCCCTCCTTCCAGAATAGAGGCCTTGCCACATCCCCCACCCAGATTCGTGCAAATGACCGCAGTGCT CCTGCTCTCAACGAAGCTAGTGATGGCTCTTACTTCGCTCTACCTCGCACCACTGGGACCGCGAGCCAGCGCCCC TACCTCAACACTAGTTCGGAGGGTGTATCTCCATCCGGAGAAGGCCTCACCTTCGGAGGATTTACTGGTCGACGA CAGATGAACTCAACCGGTCTCGGTGGTAGCCCTGTGGGAGCGACTTTCCCTGTGAAGCCTGGATTCTCGAACCCT CTCGATGCTGGAAGCGGAGATGGAATGGGTACTTCAATGGGCATGCCATCGCTGGGATCTGGAATTGCCGAGCAC ATCTCTCCAACACAGGGCCGCAGCGGCCTATCACACGCGTCTCACAACTCCGCCTCTTACACTACTCAACGACCC ACTCACTCAGCTCATCCTTCCTTCTACTCCGACAATCACAGCATCGATGGCCGCTACAGCGGTGGCTCCATGGAC CTCAACGCCAGCTTTAACAAGCTACAGCTCAACGAAGCTAACTATGCCTCCCAAGCGGCCCAGCGACCCTCGTTT ATTCCCCATGCTTCCTTTGATGGCTCCTTCCCGCGCGGAAAGTATCAGAACAACGAAGACACTTACCAGGCACTG GGATACACCGCAGAGGCTGCGCAGGAGATGCACCTTGCTTACCAGGCACGAACCAGAGCTGCGAACACCGGCTCC ATCTCACCCTCCGACTATGCCCGCATGGATAGCCCCATCTATCCCGGCGTGGACGGGGGTGCTCAGTATCGCAAT GCAGCTCCGAGTGAAAGCCAAGTGGCAGCCTTTGAGCGCAGACTCCGAAACTTCCAGGAGCAGGAGCTTGCCCAA GGTTCCTCGCGATTGCAGTACCCTCCTTCTTTTGACTTCCAAGCATACCAGGCTTCTCGCATGAATGCAATCTCT GGATTCTACCCAGTAGGTCATCTTAGTGGCCTCGGTGCCGCTGCTCTGGTCTCACGCACTCAACGCGAGCATGAT CCTACCCAGGTTGTGCGCAGCCCTCTCCTAGAAGAGTTCAGGGCCAATAGCAAGGGCAACAAGCGCTACGAGTTG AAGGACATCTACAACCATGTGGTCGAGTTTAGTGGTGACCAGCACGGCTCTCGCTTCATTCAACAGAAGCTTGAG ACCGCGAACAGTGACGAGAAGGAGCAGGTGTTCCGGGAGATCCAGCCCAACTGCCTTCAGTTGATGACCGATGTC TTCGGCAACTACGTCGTGCAGAAATTGTTCGAGCATGGAAACCAGACTCAGAAGAAGATTTTGGCCAACCAGATG CGCGGCCATGTTCTGGCCCTGTCGACCCAGATGTATGGATGCCGAGTAGTCCAGAAGGCCCTGGAACACATCCTC ACTGACCAGCAAGCTGTGATGGTCAAGGAACTGGAGAACCATGTCCTCAAGTGTGTTCGTGATCAGAACGGCAAC CATGTCATCCAGAAGGCCATTGAGCGTGTCCCTTCGGAGCATGTCCAGTTCATCATCAATGCGTTCCGCGGTCAG GTCAACAGACTGGCCGCCCATCCTTATGGCTGCCGTGTCATTCAGAGAATGCTTGAGCACTGCCAGGAGGTCGAC CGCCAGTCCATTCTGGCCGAGCTTCATGCCTGCACTTCCAATCTGATCCCTGATCAGTTCGGCAACTATGTCATC CAGCATGTTATCGAGAACGGCGACGAGAAGGACCGTACTCGCATGATTGACATCGTTATGGGACAGCTCCTGGCC TACTCCAAGCATAAGTTTGCTAGCAACGTGGTTGAGAAGAGCATTGAGTTCGGTGCAGAACATGAGCGTATCCAC ATCATCAGTACTCTAACCTCTTCGAACGACCGCGGCGAGAGCCCTCTCCTTGGTCTCATGCGTGACCAGTATGGC AATTATGTCATTCAAAAAGTCTTGGGCCAATTGAAGGATGCCGAACGTGAAGCTCTCATCGACCAGATCAAGCCC CTTCTCAGCCAGCTCAAGAAGTTCAGCTATGGAAAGCAGATTGTCGCGATCGAGAAGCTCATTTTTGACCCCAAC TCTCCTGCGACCGTACCTCTGTCTCACCCCACCTCTACCACTCCTCCCCACTCCCACAAATCCTCCCCGCAACCC GCCAAGCGCTCAATCCCGACTACTGAGCAGCCCCGGGCGCCTTTCATGGGCAACGCTCCACCTACTCCTCCCCCG ACGGATGCTCAGACCACCGTCGATACCACCCTCGAGTCGAAGGGCCTCGCCAAGAGCACGGTGACCTCGGTTTCG AGTCCCGAGACAGGCAACACCGGTGTTACCGTCCCGGTCGATGTCACCAGTGCTCATTAA |
| Gene | >Pro_DTO377G3_2|g7022.t1 ATGGCCGCGAATGCAACCAGCGTACACAACGTGAGTGAAACACATGGGTGTGGATCAATGGAATGCCGATAATAA CATCGAGTCTAGGCACGATCGAACAGAGCGTCCAACATGGGTTCATCCGGGATGAACGACCGCAACCGCAGCTCA CAAAGCAACAGTGTCGGTAAAGGTTTCGGTGCTAGTAAGACTAGCTGGAAGAACAACATCTGGGGTGACTCCAAC CTAGGAGGATTCGGAGATGGTGAGTAATTCGTACACCAATTGCGACTTGGGCTGTGCTGACAAATTTTGCAGAAC AACACCTCGGCGAGACTGCATTCGAAGGAAAATCTGGATCTGGTTCCCTTCTCTCTACATCAGAGTCAGACGGCT GGTCGGGACGTGCTAACCTGCCTTGGAGCACTGTCAACACCAACCCCTCCTTCCAGAATAGAGGCCTTGCCACAT CCCCCACCCAGATTCGTGCAAATGACCGCAGTGCTCCTGCTCTCAACGAAGCTAGTGATGGCTCTTACTTCGCTC TACCTCGCACCACTGGGACCGCGAGCCAGCGCCCCTACCTCAACACTAGTTCGGAGGGTGTATCTCCATCCGGAG AAGGCCTCACCTTCGGAGGATTTACTGGTCGACGACAGATGAACTCAACCGGTCTCGGTGGTAGCCCTGTGGGAG CGACTTTCCCTGTGAAGCCTGGATTCTCGAACCCTCTCGATGCTGGAAGCGGAGATGGAATGGGTACTTCAATGG GCATGCCATCGCTGGGATCTGGAATTGCCGAGCACATCTCTCCAACACAGGGCCGCAGCGGCCTATCACACGCGT CTCACAACTCCGCCTCTTACACTACTCAACGACCCACTCACTCAGCTCATCCTTCCTTCTACTCCGACAATCACA GCATCGATGGCCGCTACAGCGGTGGCTCCATGGACCTCAACGCCAGCTTTAACAAGCTACAGCTCAACGAAGCTA ACTATGCCTCCCAAGCGGCCCAGCGACCCTCGTTTATTCCCCATGCTTCCTTTGATGGCTCCTTCCCGCGCGGAA AGTATCAGAACAACGAAGACACTTACCAGGCACTGGGATACACCGCAGAGGCTGCGCAGGAGATGCACCTTGCTT ACCAGGCACGAACCAGAGCTGCGAACACCGGCTCCATCTCACCCTCCGACTATGCCCGCATGGATAGCCCCATCT ATCCCGGCGTGGACGGGGGTGCTCAGTATCGCAATGCAGCTCCGAGTGAAAGCCAAGTGGCAGCCTTTGAGCGCA GACTCCGAAACTTCCAGGAGCAGGAGCTTGCCCAAGGTTCCTCGCGATTGCAGTACCCTCCTTCTTTTGACTTCC AAGCATACCAGGCTTCTCGCATGAATGCAATCTCTGGATTCTACCCAGTAGGTCATCTTAGTGGCCTCGGTGCCG CTGCTCTGGTCTCACGCACTCAACGCGAGCATGATCCTACCCAGGTTGTGCGCAGCCCTCTCCTAGAAGAGTTCA GGGCCAATAGCAAGGGCAACAAGCGCTACGAGTTGAAGGACATCTACAACCATGTGGTCGAGTTTAGTGGTGACC AGCACGGCTCTCGCTTCATTCAACAGAAGCTTGAGACCGCGAACAGTGACGAGAAGGAGCAGGTGTTCCGGGAGA TCCAGCCCAACTGCCTTCAGTTGATGACCGATGTCTTCGGCAACTACGTCGTGCAGAAATTGTTCGAGCATGGAA ACCAGACTCAGAAGAAGATTTTGGCCAACCAGATGCGCGGCCATGTTCTGGCCCTGTCGACCCAGATGTATGGAT GCCGAGTAGTCCAGAAGGCCCTGGAACACATCCTCACTGACCAGCAAGCTGTGATGGTCAAGGAACTGGAGAACC ATGTCCTCAAGTGTGTTCGTGATCAGAACGGCAACCATGTCATCCAGAAGGCCATTGAGCGTGTCCCTTCGGAGC ATGTCCAGTTCATCATCAATGCGTTCCGCGGTCAGGTCAACAGACTGGCCGCCCATCCTTATGGCTGCCGTGTCA TTCAGAGAATGCTTGAGCACTGCCAGGAGGTCGACCGCCAGTCCATTCTGGCCGAGCTTCATGCCTGCACTTCCA ATCTGATCCCTGATCAGTTCGGCAACTATGTCATCCAGCATGTTATCGAGAACGGCGACGAGAAGGACCGTACTC GCATGATTGACATCGTTATGGGACAGCTCCTGGCCTACTCCAAGCATAAGTTTGCTAGCAACGTGGTTGAGAAGA GCATTGAGTTCGGTGCAGAACATGAGCGTATCCACATCATCAGTACTCTAACCTCTTCGAACGACCGCGGCGAGA GCCCTCTCCTTGGTCTCATGCGTGACCAGTATGGCAATTATGTCATTCGTAAGTTCAATACCATCATTTTTTGCG TGCTATGCTAACCCCCAACAGAAAAAGTCTTGGGCCAATTGAAGGATGCCGAACGTGAAGCTCTCATCGACCAGA TCAAGCCCCTTCTCAGCCAGCTCAAGAAGTTCAGCTATGGAAAGCAGATTGTCGCGATCGAGAAGCTCATTTTTG ACCCCAACTCTCCTGCGACCGTACCTCTGTCTCACCCCACCTCTACCACTCCTCCCCACTCCCACAAATCCTCCC CGCAACCCGCCAAGCGCTCAATCCCGACTACTGAGCAGCCCCGGGCGCCTTTCATGGGCAACGCTCCACCTACTC CTCCCCCGACGGATGCTCAGACCACCGTCGATACCACCCTCGAGTCGAAGGGCCTCGCCAAGAGCACGGTGACCT CGGTTTCGAGTCCCGAGACAGGCAACACCGGTGTTACCGTCCCGGTCGATGTCACCAGTGCTCATTAA |