Protein ID | Pro_DTO377G3_2|g7022.t1 |
Gene name | |
Location | scaffold_20:253334..256177 |
Strand | + |
Gene length (bp) | 2843 |
Transcript length (bp) | 2685 |
Coding sequence length (bp) | 2685 |
Protein length (aa) | 895 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00806 | PUF | Pumilio-family RNA binding repeat | 2.5E-10 | 481 | 514 |
PF00806 | PUF | Pumilio-family RNA binding repeat | 1.2E-08 | 517 | 548 |
PF00806 | PUF | Pumilio-family RNA binding repeat | 2.4E-10 | 553 | 586 |
PF00806 | PUF | Pumilio-family RNA binding repeat | 8.8E-06 | 590 | 620 |
PF00806 | PUF | Pumilio-family RNA binding repeat | 1.0E-12 | 625 | 659 |
PF00806 | PUF | Pumilio-family RNA binding repeat | 2.1E-06 | 668 | 694 |
PF00806 | PUF | Pumilio-family RNA binding repeat | 9.7E-04 | 698 | 728 |
PF00806 | PUF | Pumilio-family RNA binding repeat | 1.5E-06 | 743 | 773 |
GO Term | Description | Terminal node |
---|---|---|
GO:0003723 | RNA binding | Yes |
GO:0097159 | organic cyclic compound binding | No |
GO:0005488 | binding | No |
GO:1901363 | heterocyclic compound binding | No |
GO:0003676 | nucleic acid binding | No |
GO:0003674 | molecular_function | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 41 | 0.45 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Pro_DTO377G3_2|g7022.t1 MAANATSVHNARSNRASNMGSSGMNDRNRSSQSNSVGKGFGASKTSWKNNIWGDSNLGGFGDEQHLGETAFEGKS GSGSLLSTSESDGWSGRANLPWSTVNTNPSFQNRGLATSPTQIRANDRSAPALNEASDGSYFALPRTTGTASQRP YLNTSSEGVSPSGEGLTFGGFTGRRQMNSTGLGGSPVGATFPVKPGFSNPLDAGSGDGMGTSMGMPSLGSGIAEH ISPTQGRSGLSHASHNSASYTTQRPTHSAHPSFYSDNHSIDGRYSGGSMDLNASFNKLQLNEANYASQAAQRPSF IPHASFDGSFPRGKYQNNEDTYQALGYTAEAAQEMHLAYQARTRAANTGSISPSDYARMDSPIYPGVDGGAQYRN AAPSESQVAAFERRLRNFQEQELAQGSSRLQYPPSFDFQAYQASRMNAISGFYPVGHLSGLGAAALVSRTQREHD PTQVVRSPLLEEFRANSKGNKRYELKDIYNHVVEFSGDQHGSRFIQQKLETANSDEKEQVFREIQPNCLQLMTDV FGNYVVQKLFEHGNQTQKKILANQMRGHVLALSTQMYGCRVVQKALEHILTDQQAVMVKELENHVLKCVRDQNGN HVIQKAIERVPSEHVQFIINAFRGQVNRLAAHPYGCRVIQRMLEHCQEVDRQSILAELHACTSNLIPDQFGNYVI QHVIENGDEKDRTRMIDIVMGQLLAYSKHKFASNVVEKSIEFGAEHERIHIISTLTSSNDRGESPLLGLMRDQYG NYVIQKVLGQLKDAEREALIDQIKPLLSQLKKFSYGKQIVAIEKLIFDPNSPATVPLSHPTSTTPPHSHKSSPQP AKRSIPTTEQPRAPFMGNAPPTPPPTDAQTTVDTTLESKGLAKSTVTSVSSPETGNTGVTVPVDVTSAH* |
Coding | >Pro_DTO377G3_2|g7022.t1 ATGGCCGCGAATGCAACCAGCGTACACAACGCACGATCGAACAGAGCGTCCAACATGGGTTCATCCGGGATGAAC GACCGCAACCGCAGCTCACAAAGCAACAGTGTCGGTAAAGGTTTCGGTGCTAGTAAGACTAGCTGGAAGAACAAC ATCTGGGGTGACTCCAACCTAGGAGGATTCGGAGATGAACAACACCTCGGCGAGACTGCATTCGAAGGAAAATCT GGATCTGGTTCCCTTCTCTCTACATCAGAGTCAGACGGCTGGTCGGGACGTGCTAACCTGCCTTGGAGCACTGTC AACACCAACCCCTCCTTCCAGAATAGAGGCCTTGCCACATCCCCCACCCAGATTCGTGCAAATGACCGCAGTGCT CCTGCTCTCAACGAAGCTAGTGATGGCTCTTACTTCGCTCTACCTCGCACCACTGGGACCGCGAGCCAGCGCCCC TACCTCAACACTAGTTCGGAGGGTGTATCTCCATCCGGAGAAGGCCTCACCTTCGGAGGATTTACTGGTCGACGA CAGATGAACTCAACCGGTCTCGGTGGTAGCCCTGTGGGAGCGACTTTCCCTGTGAAGCCTGGATTCTCGAACCCT CTCGATGCTGGAAGCGGAGATGGAATGGGTACTTCAATGGGCATGCCATCGCTGGGATCTGGAATTGCCGAGCAC ATCTCTCCAACACAGGGCCGCAGCGGCCTATCACACGCGTCTCACAACTCCGCCTCTTACACTACTCAACGACCC ACTCACTCAGCTCATCCTTCCTTCTACTCCGACAATCACAGCATCGATGGCCGCTACAGCGGTGGCTCCATGGAC CTCAACGCCAGCTTTAACAAGCTACAGCTCAACGAAGCTAACTATGCCTCCCAAGCGGCCCAGCGACCCTCGTTT ATTCCCCATGCTTCCTTTGATGGCTCCTTCCCGCGCGGAAAGTATCAGAACAACGAAGACACTTACCAGGCACTG GGATACACCGCAGAGGCTGCGCAGGAGATGCACCTTGCTTACCAGGCACGAACCAGAGCTGCGAACACCGGCTCC ATCTCACCCTCCGACTATGCCCGCATGGATAGCCCCATCTATCCCGGCGTGGACGGGGGTGCTCAGTATCGCAAT GCAGCTCCGAGTGAAAGCCAAGTGGCAGCCTTTGAGCGCAGACTCCGAAACTTCCAGGAGCAGGAGCTTGCCCAA GGTTCCTCGCGATTGCAGTACCCTCCTTCTTTTGACTTCCAAGCATACCAGGCTTCTCGCATGAATGCAATCTCT GGATTCTACCCAGTAGGTCATCTTAGTGGCCTCGGTGCCGCTGCTCTGGTCTCACGCACTCAACGCGAGCATGAT CCTACCCAGGTTGTGCGCAGCCCTCTCCTAGAAGAGTTCAGGGCCAATAGCAAGGGCAACAAGCGCTACGAGTTG AAGGACATCTACAACCATGTGGTCGAGTTTAGTGGTGACCAGCACGGCTCTCGCTTCATTCAACAGAAGCTTGAG ACCGCGAACAGTGACGAGAAGGAGCAGGTGTTCCGGGAGATCCAGCCCAACTGCCTTCAGTTGATGACCGATGTC TTCGGCAACTACGTCGTGCAGAAATTGTTCGAGCATGGAAACCAGACTCAGAAGAAGATTTTGGCCAACCAGATG CGCGGCCATGTTCTGGCCCTGTCGACCCAGATGTATGGATGCCGAGTAGTCCAGAAGGCCCTGGAACACATCCTC ACTGACCAGCAAGCTGTGATGGTCAAGGAACTGGAGAACCATGTCCTCAAGTGTGTTCGTGATCAGAACGGCAAC CATGTCATCCAGAAGGCCATTGAGCGTGTCCCTTCGGAGCATGTCCAGTTCATCATCAATGCGTTCCGCGGTCAG GTCAACAGACTGGCCGCCCATCCTTATGGCTGCCGTGTCATTCAGAGAATGCTTGAGCACTGCCAGGAGGTCGAC CGCCAGTCCATTCTGGCCGAGCTTCATGCCTGCACTTCCAATCTGATCCCTGATCAGTTCGGCAACTATGTCATC CAGCATGTTATCGAGAACGGCGACGAGAAGGACCGTACTCGCATGATTGACATCGTTATGGGACAGCTCCTGGCC TACTCCAAGCATAAGTTTGCTAGCAACGTGGTTGAGAAGAGCATTGAGTTCGGTGCAGAACATGAGCGTATCCAC ATCATCAGTACTCTAACCTCTTCGAACGACCGCGGCGAGAGCCCTCTCCTTGGTCTCATGCGTGACCAGTATGGC AATTATGTCATTCAAAAAGTCTTGGGCCAATTGAAGGATGCCGAACGTGAAGCTCTCATCGACCAGATCAAGCCC CTTCTCAGCCAGCTCAAGAAGTTCAGCTATGGAAAGCAGATTGTCGCGATCGAGAAGCTCATTTTTGACCCCAAC TCTCCTGCGACCGTACCTCTGTCTCACCCCACCTCTACCACTCCTCCCCACTCCCACAAATCCTCCCCGCAACCC GCCAAGCGCTCAATCCCGACTACTGAGCAGCCCCGGGCGCCTTTCATGGGCAACGCTCCACCTACTCCTCCCCCG ACGGATGCTCAGACCACCGTCGATACCACCCTCGAGTCGAAGGGCCTCGCCAAGAGCACGGTGACCTCGGTTTCG AGTCCCGAGACAGGCAACACCGGTGTTACCGTCCCGGTCGATGTCACCAGTGCTCATTAA |
Transcript | >Pro_DTO377G3_2|g7022.t1 ATGGCCGCGAATGCAACCAGCGTACACAACGCACGATCGAACAGAGCGTCCAACATGGGTTCATCCGGGATGAAC GACCGCAACCGCAGCTCACAAAGCAACAGTGTCGGTAAAGGTTTCGGTGCTAGTAAGACTAGCTGGAAGAACAAC ATCTGGGGTGACTCCAACCTAGGAGGATTCGGAGATGAACAACACCTCGGCGAGACTGCATTCGAAGGAAAATCT GGATCTGGTTCCCTTCTCTCTACATCAGAGTCAGACGGCTGGTCGGGACGTGCTAACCTGCCTTGGAGCACTGTC AACACCAACCCCTCCTTCCAGAATAGAGGCCTTGCCACATCCCCCACCCAGATTCGTGCAAATGACCGCAGTGCT CCTGCTCTCAACGAAGCTAGTGATGGCTCTTACTTCGCTCTACCTCGCACCACTGGGACCGCGAGCCAGCGCCCC TACCTCAACACTAGTTCGGAGGGTGTATCTCCATCCGGAGAAGGCCTCACCTTCGGAGGATTTACTGGTCGACGA CAGATGAACTCAACCGGTCTCGGTGGTAGCCCTGTGGGAGCGACTTTCCCTGTGAAGCCTGGATTCTCGAACCCT CTCGATGCTGGAAGCGGAGATGGAATGGGTACTTCAATGGGCATGCCATCGCTGGGATCTGGAATTGCCGAGCAC ATCTCTCCAACACAGGGCCGCAGCGGCCTATCACACGCGTCTCACAACTCCGCCTCTTACACTACTCAACGACCC ACTCACTCAGCTCATCCTTCCTTCTACTCCGACAATCACAGCATCGATGGCCGCTACAGCGGTGGCTCCATGGAC CTCAACGCCAGCTTTAACAAGCTACAGCTCAACGAAGCTAACTATGCCTCCCAAGCGGCCCAGCGACCCTCGTTT ATTCCCCATGCTTCCTTTGATGGCTCCTTCCCGCGCGGAAAGTATCAGAACAACGAAGACACTTACCAGGCACTG GGATACACCGCAGAGGCTGCGCAGGAGATGCACCTTGCTTACCAGGCACGAACCAGAGCTGCGAACACCGGCTCC ATCTCACCCTCCGACTATGCCCGCATGGATAGCCCCATCTATCCCGGCGTGGACGGGGGTGCTCAGTATCGCAAT GCAGCTCCGAGTGAAAGCCAAGTGGCAGCCTTTGAGCGCAGACTCCGAAACTTCCAGGAGCAGGAGCTTGCCCAA GGTTCCTCGCGATTGCAGTACCCTCCTTCTTTTGACTTCCAAGCATACCAGGCTTCTCGCATGAATGCAATCTCT GGATTCTACCCAGTAGGTCATCTTAGTGGCCTCGGTGCCGCTGCTCTGGTCTCACGCACTCAACGCGAGCATGAT CCTACCCAGGTTGTGCGCAGCCCTCTCCTAGAAGAGTTCAGGGCCAATAGCAAGGGCAACAAGCGCTACGAGTTG AAGGACATCTACAACCATGTGGTCGAGTTTAGTGGTGACCAGCACGGCTCTCGCTTCATTCAACAGAAGCTTGAG ACCGCGAACAGTGACGAGAAGGAGCAGGTGTTCCGGGAGATCCAGCCCAACTGCCTTCAGTTGATGACCGATGTC TTCGGCAACTACGTCGTGCAGAAATTGTTCGAGCATGGAAACCAGACTCAGAAGAAGATTTTGGCCAACCAGATG CGCGGCCATGTTCTGGCCCTGTCGACCCAGATGTATGGATGCCGAGTAGTCCAGAAGGCCCTGGAACACATCCTC ACTGACCAGCAAGCTGTGATGGTCAAGGAACTGGAGAACCATGTCCTCAAGTGTGTTCGTGATCAGAACGGCAAC CATGTCATCCAGAAGGCCATTGAGCGTGTCCCTTCGGAGCATGTCCAGTTCATCATCAATGCGTTCCGCGGTCAG GTCAACAGACTGGCCGCCCATCCTTATGGCTGCCGTGTCATTCAGAGAATGCTTGAGCACTGCCAGGAGGTCGAC CGCCAGTCCATTCTGGCCGAGCTTCATGCCTGCACTTCCAATCTGATCCCTGATCAGTTCGGCAACTATGTCATC CAGCATGTTATCGAGAACGGCGACGAGAAGGACCGTACTCGCATGATTGACATCGTTATGGGACAGCTCCTGGCC TACTCCAAGCATAAGTTTGCTAGCAACGTGGTTGAGAAGAGCATTGAGTTCGGTGCAGAACATGAGCGTATCCAC ATCATCAGTACTCTAACCTCTTCGAACGACCGCGGCGAGAGCCCTCTCCTTGGTCTCATGCGTGACCAGTATGGC AATTATGTCATTCAAAAAGTCTTGGGCCAATTGAAGGATGCCGAACGTGAAGCTCTCATCGACCAGATCAAGCCC CTTCTCAGCCAGCTCAAGAAGTTCAGCTATGGAAAGCAGATTGTCGCGATCGAGAAGCTCATTTTTGACCCCAAC TCTCCTGCGACCGTACCTCTGTCTCACCCCACCTCTACCACTCCTCCCCACTCCCACAAATCCTCCCCGCAACCC GCCAAGCGCTCAATCCCGACTACTGAGCAGCCCCGGGCGCCTTTCATGGGCAACGCTCCACCTACTCCTCCCCCG ACGGATGCTCAGACCACCGTCGATACCACCCTCGAGTCGAAGGGCCTCGCCAAGAGCACGGTGACCTCGGTTTCG AGTCCCGAGACAGGCAACACCGGTGTTACCGTCCCGGTCGATGTCACCAGTGCTCATTAA |
Gene | >Pro_DTO377G3_2|g7022.t1 ATGGCCGCGAATGCAACCAGCGTACACAACGTGAGTGAAACACATGGGTGTGGATCAATGGAATGCCGATAATAA CATCGAGTCTAGGCACGATCGAACAGAGCGTCCAACATGGGTTCATCCGGGATGAACGACCGCAACCGCAGCTCA CAAAGCAACAGTGTCGGTAAAGGTTTCGGTGCTAGTAAGACTAGCTGGAAGAACAACATCTGGGGTGACTCCAAC CTAGGAGGATTCGGAGATGGTGAGTAATTCGTACACCAATTGCGACTTGGGCTGTGCTGACAAATTTTGCAGAAC AACACCTCGGCGAGACTGCATTCGAAGGAAAATCTGGATCTGGTTCCCTTCTCTCTACATCAGAGTCAGACGGCT GGTCGGGACGTGCTAACCTGCCTTGGAGCACTGTCAACACCAACCCCTCCTTCCAGAATAGAGGCCTTGCCACAT CCCCCACCCAGATTCGTGCAAATGACCGCAGTGCTCCTGCTCTCAACGAAGCTAGTGATGGCTCTTACTTCGCTC TACCTCGCACCACTGGGACCGCGAGCCAGCGCCCCTACCTCAACACTAGTTCGGAGGGTGTATCTCCATCCGGAG AAGGCCTCACCTTCGGAGGATTTACTGGTCGACGACAGATGAACTCAACCGGTCTCGGTGGTAGCCCTGTGGGAG CGACTTTCCCTGTGAAGCCTGGATTCTCGAACCCTCTCGATGCTGGAAGCGGAGATGGAATGGGTACTTCAATGG GCATGCCATCGCTGGGATCTGGAATTGCCGAGCACATCTCTCCAACACAGGGCCGCAGCGGCCTATCACACGCGT CTCACAACTCCGCCTCTTACACTACTCAACGACCCACTCACTCAGCTCATCCTTCCTTCTACTCCGACAATCACA GCATCGATGGCCGCTACAGCGGTGGCTCCATGGACCTCAACGCCAGCTTTAACAAGCTACAGCTCAACGAAGCTA ACTATGCCTCCCAAGCGGCCCAGCGACCCTCGTTTATTCCCCATGCTTCCTTTGATGGCTCCTTCCCGCGCGGAA AGTATCAGAACAACGAAGACACTTACCAGGCACTGGGATACACCGCAGAGGCTGCGCAGGAGATGCACCTTGCTT ACCAGGCACGAACCAGAGCTGCGAACACCGGCTCCATCTCACCCTCCGACTATGCCCGCATGGATAGCCCCATCT ATCCCGGCGTGGACGGGGGTGCTCAGTATCGCAATGCAGCTCCGAGTGAAAGCCAAGTGGCAGCCTTTGAGCGCA GACTCCGAAACTTCCAGGAGCAGGAGCTTGCCCAAGGTTCCTCGCGATTGCAGTACCCTCCTTCTTTTGACTTCC AAGCATACCAGGCTTCTCGCATGAATGCAATCTCTGGATTCTACCCAGTAGGTCATCTTAGTGGCCTCGGTGCCG CTGCTCTGGTCTCACGCACTCAACGCGAGCATGATCCTACCCAGGTTGTGCGCAGCCCTCTCCTAGAAGAGTTCA GGGCCAATAGCAAGGGCAACAAGCGCTACGAGTTGAAGGACATCTACAACCATGTGGTCGAGTTTAGTGGTGACC AGCACGGCTCTCGCTTCATTCAACAGAAGCTTGAGACCGCGAACAGTGACGAGAAGGAGCAGGTGTTCCGGGAGA TCCAGCCCAACTGCCTTCAGTTGATGACCGATGTCTTCGGCAACTACGTCGTGCAGAAATTGTTCGAGCATGGAA ACCAGACTCAGAAGAAGATTTTGGCCAACCAGATGCGCGGCCATGTTCTGGCCCTGTCGACCCAGATGTATGGAT GCCGAGTAGTCCAGAAGGCCCTGGAACACATCCTCACTGACCAGCAAGCTGTGATGGTCAAGGAACTGGAGAACC ATGTCCTCAAGTGTGTTCGTGATCAGAACGGCAACCATGTCATCCAGAAGGCCATTGAGCGTGTCCCTTCGGAGC ATGTCCAGTTCATCATCAATGCGTTCCGCGGTCAGGTCAACAGACTGGCCGCCCATCCTTATGGCTGCCGTGTCA TTCAGAGAATGCTTGAGCACTGCCAGGAGGTCGACCGCCAGTCCATTCTGGCCGAGCTTCATGCCTGCACTTCCA ATCTGATCCCTGATCAGTTCGGCAACTATGTCATCCAGCATGTTATCGAGAACGGCGACGAGAAGGACCGTACTC GCATGATTGACATCGTTATGGGACAGCTCCTGGCCTACTCCAAGCATAAGTTTGCTAGCAACGTGGTTGAGAAGA GCATTGAGTTCGGTGCAGAACATGAGCGTATCCACATCATCAGTACTCTAACCTCTTCGAACGACCGCGGCGAGA GCCCTCTCCTTGGTCTCATGCGTGACCAGTATGGCAATTATGTCATTCGTAAGTTCAATACCATCATTTTTTGCG TGCTATGCTAACCCCCAACAGAAAAAGTCTTGGGCCAATTGAAGGATGCCGAACGTGAAGCTCTCATCGACCAGA TCAAGCCCCTTCTCAGCCAGCTCAAGAAGTTCAGCTATGGAAAGCAGATTGTCGCGATCGAGAAGCTCATTTTTG ACCCCAACTCTCCTGCGACCGTACCTCTGTCTCACCCCACCTCTACCACTCCTCCCCACTCCCACAAATCCTCCC CGCAACCCGCCAAGCGCTCAATCCCGACTACTGAGCAGCCCCGGGCGCCTTTCATGGGCAACGCTCCACCTACTC CTCCCCCGACGGATGCTCAGACCACCGTCGATACCACCCTCGAGTCGAAGGGCCTCGCCAAGAGCACGGTGACCT CGGTTTCGAGTCCCGAGACAGGCAACACCGGTGTTACCGTCCCGGTCGATGTCACCAGTGCTCATTAA |