© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7021.t1 |
| Gene name | |
| Location | scaffold_20:247578..249444 |
| Strand | + |
| Gene length (bp) | 1866 |
| Transcript length (bp) | 1644 |
| Coding sequence length (bp) | 1644 |
| Protein length (aa) | 548 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 20 | 42 | 22 |
| 2 | 163 | 185 | 22 |
| 3 | 218 | 240 | 22 |
| 4 | 281 | 299 | 18 |
| 5 | 304 | 326 | 22 |
| 6 | 346 | 368 | 22 |
| 7 | 412 | 434 | 22 |
| 8 | 454 | 476 | 22 |
| 9 | 502 | 524 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 32.90 | 18.77 | 47.04 |
| 5d_25C | Five days - 25 degrees Celsius | 37.35 | 21.47 | 53.23 |
| 7d_25C | Seven days - 25 degrees Celsius | 31.30 | 17.33 | 45.27 |
| 10d_25C | Ten days - 25 degrees Celsius | 21.73 | 11.43 | 32.03 |
| 7d_15C | Seven days - 15 degrees Celsius | 27.91 | 14.87 | 40.96 |
| 7d_30C | Seven days - 30 degrees Celsius | 65.74 | 37.64 | 93.85 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.680695 | no |
| 3d_25C | 7d_25C | 0.895142 | no |
| 3d_25C | 7d_15C | 0.594633 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.090345 | no |
| 5d_25C | 7d_25C | 0.553069 | no |
| 5d_25C | 7d_15C | 0.284407 | no |
| 5d_25C | 7d_30C | 0.009446 | yes |
| 5d_25C | 10d_25C | 0.025611 | yes |
| 7d_25C | 7d_15C | 0.739684 | no |
| 7d_25C | 7d_30C | 0.000700 | yes |
| 7d_25C | 10d_25C | 0.161166 | no |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.393956 | no |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Orthofinder run ID | 2 |
| Orthogroup | 8299 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7021.t1 MSCNFDCSAPTPLSPNSDITGIGIIINNIVTTGIAVVIISIYHFTAYDPIHDLSHDGQTPFRPNPVDVSSLALFK SYLSPFVKIARSKRFANVLIKCIRAMSDMQIMTGFFLLISGYSQLKCGLATYHWLVVVDQAWLSCLVQLSCLTHL RSYFHNRPIERTLRLLAAGVSTIMLIVGLSFTGNYDWAFHADSSDPDHPTISDPAICYMRARPAMNSAFFSMPFS IILIIFGFASRVIILYDTLSVSVVRARTSLAGHIRGLLRIVYNWSRASRSPRSLKLTLGYLPLLAIYLTGSVFVD VWDSAAIEVVWLIIAFAFGITRVIGIIHRPEKMGLDASLTSFNDWSFGQVGAMVVLAAPLITLIGLFYEEDETRV QDEEPLSDSQTAPPPELPAPSISNVTTDLNDPFKDWISHSQIFYLVDGHIFTMIISVFFWMAERDPFGKIKKTLL EDILVSSGIKMVVPILFSLMVETIFAEAGPTSISYNLAQVVVKLHSLSCLTFFSVSSSTKITYCLLPILVIWALA HRFYPFFQALFSSKLLAFLRLS* |
| Coding | >Pro_DTO377G3_2|g7021.t1 ATGTCGTGCAATTTTGACTGCTCGGCTCCCACCCCCTTATCCCCAAACAGCGATATCACTGGGATTGGGATCATT ATCAACAATATCGTGACTACCGGCATCGCTGTAGTGATCATTTCAATTTACCACTTCACTGCCTACGATCCCATC CACGACCTGTCTCATGATGGTCAAACTCCGTTTCGACCCAACCCAGTGGACGTATCCTCTTTAGCATTGTTCAAA TCATACCTAAGCCCTTTCGTCAAAATTGCTAGGAGCAAAAGATTTGCGAATGTCCTAATCAAGTGCATCCGAGCA ATGAGCGATATGCAAATCATGACAGGCTTTTTCCTCCTGATCAGCGGGTATTCCCAGCTCAAATGCGGCTTGGCA ACCTATCATTGGCTAGTCGTTGTTGACCAGGCCTGGCTTTCCTGCCTAGTCCAGTTATCCTGCTTAACGCACCTA CGCAGTTATTTCCACAACCGCCCTATCGAGCGGACATTACGGTTACTAGCAGCCGGTGTATCTACGATAATGTTG ATCGTGGGGCTTAGTTTCACGGGAAACTACGATTGGGCCTTTCACGCAGATAGTAGCGATCCTGATCACCCGACG ATTAGTGACCCTGCAATCTGTTATATGCGCGCTCGTCCGGCGATGAATTCGGCCTTTTTTTCGATGCCTTTCTCG ATAATTTTGATTATCTTTGGATTTGCTTCGAGGGTGATTATCCTCTACGATACGCTTTCAGTTAGCGTTGTTAGA GCTAGAACTTCCCTTGCAGGACATATACGAGGGTTATTACGCATTGTGTATAACTGGAGCCGGGCGTCTCGCTCG CCACGAAGTCTGAAATTGACACTTGGATATCTCCCCCTCTTAGCTATATACCTCACGGGGTCTGTGTTTGTGGAT GTGTGGGATTCCGCTGCTATAGAGGTCGTCTGGTTAATCATCGCCTTTGCATTCGGTATCACCCGAGTGATAGGA ATAATACATCGACCGGAAAAGATGGGCCTCGACGCTTCGTTGACTAGTTTCAATGATTGGTCGTTTGGCCAAGTT GGTGCTATGGTGGTACTAGCCGCACCGCTTATCACACTCATCGGGTTGTTCTACGAGGAAGACGAGACTCGTGTA CAGGATGAGGAACCTCTCTCCGACAGCCAAACCGCACCACCGCCGGAACTCCCTGCCCCTTCTATATCAAACGTA ACCACGGACCTCAATGATCCCTTTAAGGATTGGATCTCGCACTCCCAAATATTCTATCTGGTCGACGGACATATA TTCACAATGATCATAAGTGTTTTCTTCTGGATGGCAGAGCGTGATCCTTTCGGCAAGATAAAGAAGACATTATTA GAGGATATTCTCGTCTCCTCGGGTATCAAGATGGTTGTACCCATTCTTTTCTCTTTGATGGTGGAGACTATCTTT GCGGAAGCTGGCCCTACTAGTATTTCTTACAACCTTGCGCAAGTTGTAGTAAAGCTGCACAGCCTGAGCTGCCTG ACGTTTTTCAGTGTCTCCAGTTCTACGAAGATTACTTATTGTCTCCTGCCTATCCTTGTTATCTGGGCTTTGGCG CATCGCTTCTATCCCTTTTTTCAAGCTTTATTCTCGTCGAAGTTGCTGGCCTTTCTGCGGTTGTCATGA |
| Transcript | >Pro_DTO377G3_2|g7021.t1 ATGTCGTGCAATTTTGACTGCTCGGCTCCCACCCCCTTATCCCCAAACAGCGATATCACTGGGATTGGGATCATT ATCAACAATATCGTGACTACCGGCATCGCTGTAGTGATCATTTCAATTTACCACTTCACTGCCTACGATCCCATC CACGACCTGTCTCATGATGGTCAAACTCCGTTTCGACCCAACCCAGTGGACGTATCCTCTTTAGCATTGTTCAAA TCATACCTAAGCCCTTTCGTCAAAATTGCTAGGAGCAAAAGATTTGCGAATGTCCTAATCAAGTGCATCCGAGCA ATGAGCGATATGCAAATCATGACAGGCTTTTTCCTCCTGATCAGCGGGTATTCCCAGCTCAAATGCGGCTTGGCA ACCTATCATTGGCTAGTCGTTGTTGACCAGGCCTGGCTTTCCTGCCTAGTCCAGTTATCCTGCTTAACGCACCTA CGCAGTTATTTCCACAACCGCCCTATCGAGCGGACATTACGGTTACTAGCAGCCGGTGTATCTACGATAATGTTG ATCGTGGGGCTTAGTTTCACGGGAAACTACGATTGGGCCTTTCACGCAGATAGTAGCGATCCTGATCACCCGACG ATTAGTGACCCTGCAATCTGTTATATGCGCGCTCGTCCGGCGATGAATTCGGCCTTTTTTTCGATGCCTTTCTCG ATAATTTTGATTATCTTTGGATTTGCTTCGAGGGTGATTATCCTCTACGATACGCTTTCAGTTAGCGTTGTTAGA GCTAGAACTTCCCTTGCAGGACATATACGAGGGTTATTACGCATTGTGTATAACTGGAGCCGGGCGTCTCGCTCG CCACGAAGTCTGAAATTGACACTTGGATATCTCCCCCTCTTAGCTATATACCTCACGGGGTCTGTGTTTGTGGAT GTGTGGGATTCCGCTGCTATAGAGGTCGTCTGGTTAATCATCGCCTTTGCATTCGGTATCACCCGAGTGATAGGA ATAATACATCGACCGGAAAAGATGGGCCTCGACGCTTCGTTGACTAGTTTCAATGATTGGTCGTTTGGCCAAGTT GGTGCTATGGTGGTACTAGCCGCACCGCTTATCACACTCATCGGGTTGTTCTACGAGGAAGACGAGACTCGTGTA CAGGATGAGGAACCTCTCTCCGACAGCCAAACCGCACCACCGCCGGAACTCCCTGCCCCTTCTATATCAAACGTA ACCACGGACCTCAATGATCCCTTTAAGGATTGGATCTCGCACTCCCAAATATTCTATCTGGTCGACGGACATATA TTCACAATGATCATAAGTGTTTTCTTCTGGATGGCAGAGCGTGATCCTTTCGGCAAGATAAAGAAGACATTATTA GAGGATATTCTCGTCTCCTCGGGTATCAAGATGGTTGTACCCATTCTTTTCTCTTTGATGGTGGAGACTATCTTT GCGGAAGCTGGCCCTACTAGTATTTCTTACAACCTTGCGCAAGTTGTAGTAAAGCTGCACAGCCTGAGCTGCCTG ACGTTTTTCAGTGTCTCCAGTTCTACGAAGATTACTTATTGTCTCCTGCCTATCCTTGTTATCTGGGCTTTGGCG CATCGCTTCTATCCCTTTTTTCAAGCTTTATTCTCGTCGAAGTTGCTGGCCTTTCTGCGGTTGTCATGA |
| Gene | >Pro_DTO377G3_2|g7021.t1 ATGTCGTGCAATTTTGACTGCTCGGCTCCCACCCCCTTATCCCCAAACAGCGATATCACTGGGATTGGGGTATGA GTTTCCCTTTCTCTCGGCCGCGGACGCATCTCACACTCTTAGATCATTATCAACAATATCGTGACTACCGGCATC GCTGTAGTGATCATTTCAATTTACCACTTCACTGCCTACGATCCCATCCACGACCTGTCTCATGATGGTCAAACT CCGTTTCGACCCAACCCAGTGGACGTATCCTCTTTAGCATTGTTCAAATCATACCTAAGCCCTTTCGTCAAAATT GCTAGGAGCAAAAGATTTGCGAATGTCCTAATCAAGGTGGGTGGATTCTTATGAGATCGGATCGGTGAATCATCA AAGTAACTTCGAAAAACAGTGCATCCGAGCAATGAGCGATATGCAAATCATGACAGGCTTTTTCCTCCTGATCAG CGGGTATTCCCAGCTCAAATGCGGCTTGGCAACCTATCATTGGCTAGTCGTTGTTGACCAGGCCTGGCTTTCCTG CCTAGTCCAGTTATCCTGCTTAACGCACCTACGCAGTTATTTCCACAACCGCCCTATCGAGCGGACATTACGGTT ACTAGCAGCCGGTGTATCTACGATAATGTTGATCGTGGGGCTTAGTTTCACGGGAAACTACGATTGGGCCTTTCA CGCAGATAGTAGCGATCCTGATCACCCGACGATTAGTGACCCTGCAATCTGTTATATGCGCGCTCGTCCGGCGAT GAATTCGGCCTTTTTTTCGATGCCTTTCTCGATAATTTTGATTATCTTTGGATTTGCTTCGAGGGTGATTATCCT CTACGATACGCTTTCAGTTAGCGTTGTTAGAGCTAGAACTTCCCTTGCAGGACATATACGAGGGTTATTACGCAT TGTGTATAACTGGAGCCGGGCGTCTCGCTCGCCACGAAGTCTGAAATTGACACTTGGATATCTCCCCCTCTTAGC TATATACCTCACGGGGTCTGTGTTTGTGGATGTGTGGGATTCCGCTGCTATAGAGGTCAGATATTATCTATGGGA CGTGTGTTGATTGTATTCTATGTTCTCTAACTCGATACTAGGTCGTCTGGTTAATCATCGCCTTTGCATTCGGTA TCACCCGAGTGATAGGAATAATACATCGACCGGAAAAGATGGGCCTCGACGCTTCGTTGACTAGTTTCAATGATT GGTCGTTTGGCCAAGTTGGTGCTATGGTGGTACTAGCCGCACCGCTTATCACACTCATCGGGTTGTTCTACGAGG GTGAGTCAAACCATGATTATCGTCTAGAATCAACTGAGATCTAACACTCGTGTAGAAGACGAGACTCGTGTACAG GATGAGGAACCTCTCTCCGACAGCCAAACCGCACCACCGCCGGAACTCCCTGCCCCTTCTATATCAAACGTAACC ACGGACCTCAATGATCCCTTTAAGGATTGGATCTCGCACTCCCAAATATTCTATCTGGTCGACGGACATATATTC ACAATGATCATAAGTGTTTTCTTCTGGATGGCAGAGCGTGATCCTTTCGGCAAGATAAAGAAGACATTATTAGAG GATATTCTCGTCTCCTCGGGTATCAAGATGGTTGTACCCATTCTTTTCTCTTTGATGGTGGAGACTATCTTTGCG GAAGCTGGCCCTACTAGTATTTCTTACAACCTTGCGCAAGTTGTAGTAAAGCTGCACAGCCTGAGCTGCCTGACG TTTTTCAGTGTCTCCAGTTCTACGAAGATTACTTATTGTCTCCTGCCTATCCTTGTTATCTGGGCTTTGGCGCAT CGCTTCTATCCCTTTTTTCAAGCTTTATTCTCGTCGAAGTTGCTGGCCTTTCTGCGGTTGTCATGA |