© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7014.t1 |
| Gene name | |
| Location | scaffold_20:226026..226464 |
| Strand | - |
| Gene length (bp) | 438 |
| Transcript length (bp) | 369 |
| Coding sequence length (bp) | 369 |
| Protein length (aa) | 123 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF11779 | SPT_ssu-like | Small subunit of serine palmitoyltransferase-like | 9.3E-22 | 14 | 64 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 38 | 60 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 93.13 | 40.86 | 145.39 |
| 5d_25C | Five days - 25 degrees Celsius | 84.36 | 35.20 | 133.53 |
| 7d_25C | Seven days - 25 degrees Celsius | 114.00 | 53.05 | 174.95 |
| 10d_25C | Ten days - 25 degrees Celsius | 86.64 | 37.17 | 136.12 |
| 7d_15C | Seven days - 15 degrees Celsius | 135.85 | 65.61 | 206.09 |
| 7d_30C | Seven days - 30 degrees Celsius | 77.82 | 32.18 | 123.47 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.825338 | no |
| 3d_25C | 7d_25C | 0.591182 | no |
| 3d_25C | 7d_15C | 0.239688 | no |
| 3d_25C | 7d_30C | 0.656451 | no |
| 3d_25C | 10d_25C | 0.874953 | no |
| 5d_25C | 7d_25C | 0.386854 | no |
| 5d_25C | 7d_15C | 0.127885 | no |
| 5d_25C | 7d_30C | 0.865224 | no |
| 5d_25C | 10d_25C | 0.957750 | no |
| 7d_25C | 7d_15C | 0.641334 | no |
| 7d_25C | 7d_30C | 0.247399 | no |
| 7d_25C | 10d_25C | 0.433052 | no |
| 7d_15C | 7d_30C | 0.069248 | no |
| 7d_15C | 10d_25C | 0.144613 | no |
| 7d_30C | 10d_25C | 0.807307 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7014.t1 MVDFIIWAVASLFRWMRLKIYQYEVTFSLYMLTPIEKLIFNTLLLGLIAMIAMGTYIYLPDHLLAIYGRLYYYWA GERLFSSGRLSISSVFGENGVATQIGDLMYETAKNAAATSTERLADL* |
| Coding | >Pro_DTO377G3_2|g7014.t1 ATGGTGGACTTCATTATCTGGGCCGTGGCTAGCCTCTTCCGCTGGATGCGGTTGAAGATCTACCAGTATGAGGTG ACCTTCTCCCTCTACATGCTTACTCCGATCGAGAAGCTCATCTTCAACACGCTGCTCCTTGGCCTCATTGCCATG ATAGCCATGGGCACTTACATTTACCTTCCCGACCACCTTCTCGCCATTTACGGGCGCCTTTACTACTACTGGGCC GGCGAGCGCCTGTTCAGCTCCGGTCGGTTGTCAATCAGTTCGGTCTTTGGCGAAAATGGCGTGGCCACGCAAATC GGGGATTTGATGTACGAGACGGCAAAGAACGCTGCTGCCACCTCGACCGAGCGCTTGGCTGACCTTTGA |
| Transcript | >Pro_DTO377G3_2|g7014.t1 ATGGTGGACTTCATTATCTGGGCCGTGGCTAGCCTCTTCCGCTGGATGCGGTTGAAGATCTACCAGTATGAGGTG ACCTTCTCCCTCTACATGCTTACTCCGATCGAGAAGCTCATCTTCAACACGCTGCTCCTTGGCCTCATTGCCATG ATAGCCATGGGCACTTACATTTACCTTCCCGACCACCTTCTCGCCATTTACGGGCGCCTTTACTACTACTGGGCC GGCGAGCGCCTGTTCAGCTCCGGTCGGTTGTCAATCAGTTCGGTCTTTGGCGAAAATGGCGTGGCCACGCAAATC GGGGATTTGATGTACGAGACGGCAAAGAACGCTGCTGCCACCTCGACCGAGCGCTTGGCTGACCTTTGA |
| Gene | >Pro_DTO377G3_2|g7014.t1 ATGGTGGACTTCATTATCTGGGCCGTGGCTAGCCTCTTCCGCTGGATGCGGTTGAAGATCTACCAGTATGAGGTG ACCTTCTCCCTCTACATGCTTACTCCGATCGAGAAGCTCATCTTCAGTATGTTGCGCCTGTTCCCCGTTCACAAT ACTCTTGGTACACCATGCTGACCTTTCGTTTCCTATTTAGACACGCTGCTCCTTGGCCTCATTGCCATGATAGCC ATGGGCACTTACATTTACCTTCCCGACCACCTTCTCGCCATTTACGGGCGCCTTTACTACTACTGGGCCGGCGAG CGCCTGTTCAGCTCCGGTCGGTTGTCAATCAGTTCGGTCTTTGGCGAAAATGGCGTGGCCACGCAAATCGGGGAT TTGATGTACGAGACGGCAAAGAACGCTGCTGCCACCTCGACCGAGCGCTTGGCTGACCTTTGA |