Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g701.t1
Gene name
Locationscaffold_01:1821766..1822187
Strand+
Gene length (bp)421
Transcript length (bp)306
Coding sequence length (bp)306
Protein length (aa) 102

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03931 Skp1_POZ Skp1 family, tetramerisation domain 1.3E-04 9 70

GO

GO Term Description Terminal node
GO:0006511 ubiquitin-dependent protein catabolic process Yes
GO:0044238 primary metabolic process No
GO:1901564 organonitrogen compound metabolic process No
GO:0051603 proteolysis involved in cellular protein catabolic process No
GO:0044248 cellular catabolic process No
GO:1901575 organic substance catabolic process No
GO:0071704 organic substance metabolic process No
GO:0006508 proteolysis No
GO:0044265 cellular macromolecule catabolic process No
GO:0009057 macromolecule catabolic process No
GO:0044260 cellular macromolecule metabolic process No
GO:0009056 catabolic process No
GO:0044237 cellular metabolic process No
GO:0043170 macromolecule metabolic process No
GO:0009987 cellular process No
GO:0019941 modification-dependent protein catabolic process No
GO:0008152 metabolic process No
GO:0043632 modification-dependent macromolecule catabolic process No
GO:0008150 biological_process No
GO:0006807 nitrogen compound metabolic process No
GO:0019538 protein metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 28 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g701.t1
MAPSTETEFVTIVSSDKFEFIIPRSAAYVSETLRRMLSSNNFPEGRTGVCVLEDYSGVIVEKICEYFCYNEKHKD
QVNVPDMDIPPELCLELLMAADFLNT*
Coding >Pro_DTO377G3_2|g701.t1
ATGGCGCCATCCACGGAAACCGAGTTTGTGACTATAGTCTCAAGCGACAAATTTGAATTCATCATCCCTCGCAGC
GCAGCTTATGTCTCGGAGACCTTACGGCGCATGCTTTCTTCGAATAATTTCCCCGAGGGTCGCACCGGTGTATGT
GTCTTGGAGGACTACTCCGGTGTCATTGTCGAAAAGATCTGCGAATACTTTTGCTACAATGAAAAGCACAAGGAC
CAGGTCAACGTGCCAGACATGGATATTCCACCTGAGTTGTGCCTGGAGCTCCTGATGGCTGCTGATTTCTTGAAT
ACTTGA
Transcript >Pro_DTO377G3_2|g701.t1
ATGGCGCCATCCACGGAAACCGAGTTTGTGACTATAGTCTCAAGCGACAAATTTGAATTCATCATCCCTCGCAGC
GCAGCTTATGTCTCGGAGACCTTACGGCGCATGCTTTCTTCGAATAATTTCCCCGAGGGTCGCACCGGTGTATGT
GTCTTGGAGGACTACTCCGGTGTCATTGTCGAAAAGATCTGCGAATACTTTTGCTACAATGAAAAGCACAAGGAC
CAGGTCAACGTGCCAGACATGGATATTCCACCTGAGTTGTGCCTGGAGCTCCTGATGGCTGCTGATTTCTTGAAT
ACTTGA
Gene >Pro_DTO377G3_2|g701.t1
ATGGCGCCATCCACGGAAACCGAGTTTGTGACTATAGTCTCAAGCGACAAATTTGAATTCATCATCCCTCGCAGC
GCAGCTTATGTCTCGGAGACCTTACGGCGCATGCTTTCTTCGAGTACGTGGACTCGACATTCATTGCTACATGGG
TAGTACTAACCACGCACAGATAATTTCCCCGAGGGTCGCACCGGTGTATGTGTCTTGGAGGACTACTCGTACGTT
TCGCCCTTGTATTCCTTTTTCCTTTTCGTGGGCATTGCTAATGTTCTTTCTCTGCAGCGGTGTCATTGTCGAAAA
GATCTGCGAATACTTTTGCTACAATGAAAAGCACAAGGACCAGGTCAACGTGCCAGACATGGATATTCCACCTGA
GTTGTGCCTGGAGCTCCTGATGGCTGCTGATTTCTTGAATACTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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