© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g7008.t1 |
| Gene name | |
| Location | scaffold_20:208093..209534 |
| Strand | - |
| Gene length (bp) | 1441 |
| Transcript length (bp) | 1386 |
| Coding sequence length (bp) | 1386 |
| Protein length (aa) | 462 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07798 | CCDC90-like | Coiled-coil domain-containing protein 90-like | 1.3E-42 | 235 | 406 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 20 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 393 | 412 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 41.71 | 24.14 | 59.29 |
| 5d_25C | Five days - 25 degrees Celsius | 38.88 | 22.24 | 55.53 |
| 7d_25C | Seven days - 25 degrees Celsius | 40.19 | 22.99 | 57.40 |
| 10d_25C | Ten days - 25 degrees Celsius | 42.80 | 24.81 | 60.78 |
| 7d_15C | Seven days - 15 degrees Celsius | 42.48 | 24.59 | 60.38 |
| 7d_30C | Seven days - 30 degrees Celsius | 32.51 | 17.94 | 47.07 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.832735 | no |
| 3d_25C | 7d_25C | 0.918431 | no |
| 3d_25C | 7d_15C | 0.960781 | no |
| 3d_25C | 7d_30C | 0.355997 | no |
| 3d_25C | 10d_25C | 0.943766 | no |
| 5d_25C | 7d_25C | 0.927931 | no |
| 5d_25C | 7d_15C | 0.783524 | no |
| 5d_25C | 7d_30C | 0.539713 | no |
| 5d_25C | 10d_25C | 0.764379 | no |
| 7d_25C | 7d_15C | 0.874006 | no |
| 7d_25C | 7d_30C | 0.455801 | no |
| 7d_25C | 10d_25C | 0.857569 | no |
| 7d_15C | 7d_30C | 0.310937 | no |
| 7d_15C | 10d_25C | 0.984553 | no |
| 7d_30C | 10d_25C | 0.293682 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7008.t1 MATPRLPFLYPNFMRAVRSCEPRTYRSIRIPYRLNQRFHTSQQQERASYQRRYGPAVEPNTAHSLRPKKGPHDQE VPGDPSAGHDGVNASDQGQAPPDESQSEPPPQEAEQNNADVTSSETPTADQRNADQPTEAETKEDKEDKEDNPPT DREPREEQAKDIDGAEQEQASASSSPASEAPSEESTDTSSSTNQTPFEDVLHMPSPSVFLTPTGEPSSSDDRPPH LSAAPYVHPFDTYSLVQDLSKGGYSEEQSTTIMKAVRAILQNNLSLARASLTSKSDVENEEYLFKAACSELQSSL QTARNSEIQHQRSSRTQLQHETDIISQRLSQELSGMKDDIKGMFNDHKMSTREPQRTIDTSVQELNYKITVSLNS DGKSEIEGLRWILTRRAASTIAICAFMIIVFLKYASVHKAPEPKQAKQAEKPAASKEIATEARAVQDGGIQTVFP SAEAHLGESLG* |
| Coding | >Pro_DTO377G3_2|g7008.t1 ATGGCCACACCCAGGCTCCCGTTCCTGTATCCGAATTTTATGCGCGCGGTGCGATCATGCGAACCGAGAACATAC CGTTCAATTAGAATTCCATACCGGCTTAACCAACGCTTCCATACGAGTCAGCAACAGGAGCGTGCTTCCTACCAG CGGCGATATGGTCCTGCCGTCGAACCGAATACTGCTCATTCGTTGCGTCCGAAGAAGGGTCCACACGATCAGGAG GTGCCGGGCGATCCATCAGCTGGACATGATGGTGTAAATGCCTCCGACCAGGGGCAAGCTCCACCAGACGAGTCA CAGTCGGAACCGCCGCCCCAGGAAGCCGAGCAAAACAATGCAGATGTCACTTCTTCGGAAACCCCGACCGCAGAC CAACGGAACGCAGACCAACCAACCGAAGCTGAAACAAAGGAAGACAAGGAAGACAAGGAAGACAACCCTCCGACG GACCGGGAACCGCGCGAGGAGCAGGCCAAAGATATAGACGGCGCCGAACAGGAACAGGCTTCGGCCTCTTCGTCC CCCGCTTCCGAAGCCCCATCGGAAGAAAGTACAGATACCTCTTCATCCACAAACCAAACTCCGTTTGAGGATGTC CTCCACATGCCCTCGCCGTCGGTGTTTCTAACCCCAACCGGGGAACCCTCCTCGTCCGACGATCGCCCGCCGCAT TTGTCTGCAGCACCGTATGTTCACCCTTTCGACACATATTCATTGGTACAGGATCTGTCCAAAGGTGGCTACAGC GAAGAACAGTCTACTACAATCATGAAGGCTGTGCGGGCTATCCTGCAGAACAACCTCTCTTTGGCTAGGGCGAGC CTTACTTCGAAATCTGATGTCGAAAATGAAGAATACCTGTTCAAAGCAGCCTGCTCCGAGCTTCAGTCATCGCTC CAGACAGCTCGCAACTCGGAAATACAGCACCAGCGCTCCTCGCGCACGCAATTGCAGCATGAAACGGATATTATC TCGCAGCGTCTCAGCCAGGAACTTTCAGGCATGAAAGACGACATCAAGGGCATGTTCAATGACCACAAGATGTCC ACGCGAGAACCGCAGCGGACCATCGACACCTCGGTTCAGGAATTGAACTACAAGATCACCGTGTCGCTTAACAGC GATGGAAAGAGTGAGATTGAAGGTCTTCGATGGATTTTGACTAGACGCGCTGCTTCGACGATTGCCATCTGTGCT TTCATGATCATCGTCTTCTTGAAGTATGCTTCCGTGCACAAGGCGCCTGAGCCCAAGCAAGCCAAGCAAGCGGAG AAGCCGGCTGCCAGCAAAGAAATCGCTACTGAAGCTCGAGCCGTCCAAGATGGTGGCATTCAGACAGTCTTTCCG TCTGCTGAAGCCCATCTCGGCGAATCACTTGGTTGA |
| Transcript | >Pro_DTO377G3_2|g7008.t1 ATGGCCACACCCAGGCTCCCGTTCCTGTATCCGAATTTTATGCGCGCGGTGCGATCATGCGAACCGAGAACATAC CGTTCAATTAGAATTCCATACCGGCTTAACCAACGCTTCCATACGAGTCAGCAACAGGAGCGTGCTTCCTACCAG CGGCGATATGGTCCTGCCGTCGAACCGAATACTGCTCATTCGTTGCGTCCGAAGAAGGGTCCACACGATCAGGAG GTGCCGGGCGATCCATCAGCTGGACATGATGGTGTAAATGCCTCCGACCAGGGGCAAGCTCCACCAGACGAGTCA CAGTCGGAACCGCCGCCCCAGGAAGCCGAGCAAAACAATGCAGATGTCACTTCTTCGGAAACCCCGACCGCAGAC CAACGGAACGCAGACCAACCAACCGAAGCTGAAACAAAGGAAGACAAGGAAGACAAGGAAGACAACCCTCCGACG GACCGGGAACCGCGCGAGGAGCAGGCCAAAGATATAGACGGCGCCGAACAGGAACAGGCTTCGGCCTCTTCGTCC CCCGCTTCCGAAGCCCCATCGGAAGAAAGTACAGATACCTCTTCATCCACAAACCAAACTCCGTTTGAGGATGTC CTCCACATGCCCTCGCCGTCGGTGTTTCTAACCCCAACCGGGGAACCCTCCTCGTCCGACGATCGCCCGCCGCAT TTGTCTGCAGCACCGTATGTTCACCCTTTCGACACATATTCATTGGTACAGGATCTGTCCAAAGGTGGCTACAGC GAAGAACAGTCTACTACAATCATGAAGGCTGTGCGGGCTATCCTGCAGAACAACCTCTCTTTGGCTAGGGCGAGC CTTACTTCGAAATCTGATGTCGAAAATGAAGAATACCTGTTCAAAGCAGCCTGCTCCGAGCTTCAGTCATCGCTC CAGACAGCTCGCAACTCGGAAATACAGCACCAGCGCTCCTCGCGCACGCAATTGCAGCATGAAACGGATATTATC TCGCAGCGTCTCAGCCAGGAACTTTCAGGCATGAAAGACGACATCAAGGGCATGTTCAATGACCACAAGATGTCC ACGCGAGAACCGCAGCGGACCATCGACACCTCGGTTCAGGAATTGAACTACAAGATCACCGTGTCGCTTAACAGC GATGGAAAGAGTGAGATTGAAGGTCTTCGATGGATTTTGACTAGACGCGCTGCTTCGACGATTGCCATCTGTGCT TTCATGATCATCGTCTTCTTGAAGTATGCTTCCGTGCACAAGGCGCCTGAGCCCAAGCAAGCCAAGCAAGCGGAG AAGCCGGCTGCCAGCAAAGAAATCGCTACTGAAGCTCGAGCCGTCCAAGATGGTGGCATTCAGACAGTCTTTCCG TCTGCTGAAGCCCATCTCGGCGAATCACTTGGTTGA |
| Gene | >Pro_DTO377G3_2|g7008.t1 ATGGCCACACCCAGGCTCCCGTTCCTGTATCCGAATTTTATGCGCGCGGTGCGATCATGCGAACCGAGAACATAC CGTTCAATTAGAATTCCATACCGGCTTAACCAACGCTTCCATACGAGTCAGCAACAGGAGCGTGCTTCCTACCAG CGGCGATATGGTCCTGCCGTCGAACCGAATACTGCTCATTCGTTGCGTCCGAAGAAGGGTCCACACGATCAGGAG GTGCCGGGCGATCCATCAGCTGGACATGATGGTGTAAATGCCTCCGACCAGGGGCAAGCTCCACCAGACGAGTCA CAGTCGGAACCGCCGCCCCAGGAAGCCGAGCAAAACAATGCAGATGTCACTTCTTCGGAAACCCCGACCGCAGAC CAACGGAACGCAGACCAACCAACCGAAGCTGAAACAAAGGAAGACAAGGAAGACAAGGAAGACAACCCTCCGACG GACCGGGAACCGCGCGAGGAGCAGGCCAAAGATATAGACGGCGCCGAACAGGAACAGGCTTCGGCCTCTTCGTCC CCCGCTTCCGAAGCCCCATCGGAAGAAAGTACAGATACCTCTTCATCCACAAACCAAACTCCGTTTGAGGATGTC CTCCACATGCCCTCGCCGTCGGTGTTTCTAACCCCAACCGGGGAACCCTCCTCGTCCGACGATCGCCCGCCGCAT TTGTCTGCAGCACCGTATGTTCACCCTTTCGACACATATTCATTGGTACAGGATCTGTCCAAAGGTGGCTACAGC GAAGAACAGTCTACTACAATCATGAAGGCTGTGCGGGCTATCCTGCAGAACAACCTCTCTTTGGCTAGGGCGAGC CTTACTTCGAAATCTGATGTCGAAAATGAAGAATACCTGTTCAAAGCAGCCTGCTCCGAGCTTCAGTCATCGCTC CAGACAGCTCGCAACTCGGAAATACAGCACCAGCGCTCCTCGCGCACGCAATTGCAGCATGAAACGGATATTATC TCGCAGCGTCTCAGCCAGGAACTTTCAGGCATGAAAGACGACATCAAGGGCATGTTCAATGACCACAAGATGTCC ACGCGAGAACCGCAGCGGACCATCGACACCTCGGTTCAGGAATTGAACTACAAGATCACCGTGTCGCTTAACAGC GATGGAAAGAGTGAGATTGAAGGTCTTCGATGGATTTTGACTAGACGCGCTGCTTCGACGATTGCCATCTGTGCT TGTAAGTGCCCCATTGTTCCTATTTGGCTCTTTCGTGTAGCTAACTCGATTATAAGTCATGATCATCGTCTTCTT GAAGTATGCTTCCGTGCACAAGGCGCCTGAGCCCAAGCAAGCCAAGCAAGCGGAGAAGCCGGCTGCCAGCAAAGA AATCGCTACTGAAGCTCGAGCCGTCCAAGATGGTGGCATTCAGACAGTCTTTCCGTCTGCTGAAGCCCATCTCGG CGAATCACTTGGTTGA |