© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6996.t1 |
| Gene name | |
| Location | scaffold_20:181647..182522 |
| Strand | - |
| Gene length (bp) | 875 |
| Transcript length (bp) | 648 |
| Coding sequence length (bp) | 648 |
| Protein length (aa) | 216 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13774 | Longin | Regulated-SNARE-like domain | 4.2E-26 | 35 | 117 |
| PF00957 | Synaptobrevin | Synaptobrevin | 5.8E-14 | 132 | 211 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 191 | 213 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 113.47 | 65.81 | 161.14 |
| 5d_25C | Five days - 25 degrees Celsius | 125.41 | 73.53 | 177.29 |
| 7d_25C | Seven days - 25 degrees Celsius | 113.57 | 65.76 | 161.38 |
| 10d_25C | Ten days - 25 degrees Celsius | 134.44 | 79.43 | 189.45 |
| 7d_15C | Seven days - 15 degrees Celsius | 135.11 | 79.81 | 190.42 |
| 7d_30C | Seven days - 30 degrees Celsius | 113.40 | 65.72 | 161.08 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.746165 | no |
| 3d_25C | 7d_25C | 0.998280 | no |
| 3d_25C | 7d_15C | 0.528147 | no |
| 3d_25C | 7d_30C | 0.998280 | no |
| 3d_25C | 10d_25C | 0.541283 | no |
| 5d_25C | 7d_25C | 0.748648 | no |
| 5d_25C | 7d_15C | 0.814309 | no |
| 5d_25C | 7d_30C | 0.742223 | no |
| 5d_25C | 10d_25C | 0.828056 | no |
| 7d_25C | 7d_15C | 0.529386 | no |
| 7d_25C | 7d_30C | 0.996239 | no |
| 7d_25C | 10d_25C | 0.543309 | no |
| 7d_15C | 7d_30C | 0.525204 | no |
| 7d_15C | 10d_25C | 0.989628 | no |
| 7d_30C | 10d_25C | 0.536426 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6996.t1 MVRSTQIARLDGLMLAASVDDEQAESELSEIKSQAKMIFRRLNRNSAPQASIESGQYSLHYTIQDDICFLCICDK SYPRKLAFTYLADLASEFTTTYTSSQYLSPNLRPYAFVEFDTFIQRTKKLYQDSRASQNLDKLNDELRDVTKVMT KNIEDLLYRGDSLERMGELSGRLREDSKKYRKAAVRINWELLLKQYGPFAGVGLVICILLFWRFF* |
| Coding | >Pro_DTO377G3_2|g6996.t1 ATGGTGAGGTCAACGCAGATTGCAAGGCTCGACGGCCTTATGCTGGCAGCCTCGGTCGACGACGAGCAGGCTGAA TCGGAGCTCTCTGAGATTAAGAGTCAGGCTAAAATGATATTTCGGCGATTGAACCGCAACTCCGCACCCCAAGCC AGTATTGAGTCTGGCCAATACAGTCTACACTACACAATTCAGGACGATATATGCTTTCTATGCATTTGCGACAAG TCCTACCCCCGCAAACTCGCATTTACCTATCTCGCTGATCTGGCCTCCGAATTCACGACTACCTATACCTCCTCA CAGTACCTCTCACCAAACCTCCGTCCCTATGCCTTTGTCGAGTTTGATACCTTTATCCAGCGCACAAAGAAATTG TACCAAGACAGTCGCGCGTCTCAGAATCTTGACAAGCTGAACGATGAGCTCCGTGATGTCACCAAGGTGATGACA AAGAACATCGAGGACCTCTTGTATCGAGGCGATAGTTTGGAGCGGATGGGTGAACTGTCGGGGCGACTCCGCGAG GATAGCAAAAAATACAGAAAGGCGGCTGTACGCATCAACTGGGAATTGTTGCTGAAGCAGTATGGACCTTTCGCT GGCGTCGGGCTTGTCATTTGCATCCTTCTTTTCTGGCGATTCTTCTGA |
| Transcript | >Pro_DTO377G3_2|g6996.t1 ATGGTGAGGTCAACGCAGATTGCAAGGCTCGACGGCCTTATGCTGGCAGCCTCGGTCGACGACGAGCAGGCTGAA TCGGAGCTCTCTGAGATTAAGAGTCAGGCTAAAATGATATTTCGGCGATTGAACCGCAACTCCGCACCCCAAGCC AGTATTGAGTCTGGCCAATACAGTCTACACTACACAATTCAGGACGATATATGCTTTCTATGCATTTGCGACAAG TCCTACCCCCGCAAACTCGCATTTACCTATCTCGCTGATCTGGCCTCCGAATTCACGACTACCTATACCTCCTCA CAGTACCTCTCACCAAACCTCCGTCCCTATGCCTTTGTCGAGTTTGATACCTTTATCCAGCGCACAAAGAAATTG TACCAAGACAGTCGCGCGTCTCAGAATCTTGACAAGCTGAACGATGAGCTCCGTGATGTCACCAAGGTGATGACA AAGAACATCGAGGACCTCTTGTATCGAGGCGATAGTTTGGAGCGGATGGGTGAACTGTCGGGGCGACTCCGCGAG GATAGCAAAAAATACAGAAAGGCGGCTGTACGCATCAACTGGGAATTGTTGCTGAAGCAGTATGGACCTTTCGCT GGCGTCGGGCTTGTCATTTGCATCCTTCTTTTCTGGCGATTCTTCTGA |
| Gene | >Pro_DTO377G3_2|g6996.t1 ATGGTGAGGTCAACGCAGATTGCAAGGCTCGACGGTGAGGAACTCTCTGCGAGGTTGGGAGGATGCGTAGTGCTG ATGTCAAAGTGAAACAGGCCTTATGCTGGCAGCCTCGGTCGACGACGAGCAGGTACGTGACAACGATTATTTAAG CTGATCTGGAGCTTACAATATCCGTAGGCTGAATCGGAGCTCTCTGAGATTAAGAGTCAGGCTAAAATGATATTT CGGCGATTGAACCGCAACTCCGCACCCCAAGCCAGTATTGAGTCTGGCCAATACAGTCTACAGTAAGTCTCAGCC AGCAATCAACAAACATTGCCAATGGACAATCTCTCACATGCCTTTCAGCTACACAATTCAGGACGATATATGCTT TCTATGCATTTGCGACAAGTCCTACCCCCGCAAACTCGCATTTACCTATCTCGCTGATCTGGCCTCCGAATTCAC GACTACCTATACCTCCTCACAGTACCTCTCACCAAACCTCCGTCCCTATGCCTTTGTCGAGTTTGATACCTTTAT CCAGCGCACAAAGAAATTGTACCAAGACAGTCGCGCGTCTCAGAATCTTGACAAGCTGAACGATGAGCTCCGTGA TGTCACCAAGGTGATGACAAAGAACATCGAGGACCTCTTGTATCGAGGCGATAGTTTGGAGCGGATGGGTGAACT GTCGGGGCGACTCCGCGAGGATAGCAAAAAATACAGAAAGGCGGCTGTACGCATCAACTGGGAATTGTTGCTGAA GCAGGTGGGTCTATACTTTGCGTCAGATTTCCCCTGAACGATCTTGGCTAACCATCTCACAGTATGGACCTTTCG CTGGCGTCGGGCTTGTCATTTGCATCCTTCTTTTCTGGCGATTCTTCTGA |