Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g6995.t1
Gene name
Locationscaffold_20:180328..181508
Strand+
Gene length (bp)1180
Transcript length (bp)1044
Coding sequence length (bp)1044
Protein length (aa) 348

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF10483 Elong_Iki1 Elongator subunit Iki1 2.0E-101 16 333

GO

GO Term Description Terminal node
GO:0002098 tRNA wobble uridine modification Yes
GO:0033588 Elongator holoenzyme complex Yes
GO:0043170 macromolecule metabolic process No
GO:0044464 cell part No
GO:0046483 heterocycle metabolic process No
GO:0090304 nucleic acid metabolic process No
GO:0006400 tRNA modification No
GO:0002097 tRNA wobble base modification No
GO:0009451 RNA modification No
GO:0006399 tRNA metabolic process No
GO:0071704 organic substance metabolic process No
GO:0034470 ncRNA processing No
GO:1901360 organic cyclic compound metabolic process No
GO:0044238 primary metabolic process No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0009987 cellular process No
GO:0044237 cellular metabolic process No
GO:0006396 RNA processing No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0008033 tRNA processing No
GO:0005575 cellular_component No
GO:0008152 metabolic process No
GO:0032991 protein-containing complex No
GO:0008150 biological_process No
GO:0006807 nitrogen compound metabolic process No
GO:0043412 macromolecule modification No
GO:0006725 cellular aromatic compound metabolic process No
GO:0044424 intracellular part No
GO:0016070 RNA metabolic process No
GO:0034660 ncRNA metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 30 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g6995.t1
MAPINLSHRRTHNLLLISKLLSLRDTASPLTLVLDSLEQPATPLLKEYIRRAKLSKVHVTLVAFETLKQPDGVDA
FVSTRRKSPADIVKEVSAVYQPVAASNSSRRRLILIDSINPLLNSKRVDPGFDLPSFLGSIIAPTSPSAKVDVSL
VMTHHQDVPELPQQSPYSPSPISVLTYLATSIITLHSFSHVLAQKAARDRSLAPPVFGLEEEQEGILLGRLDRLA
GTGQAEGIVIELEHRRKSGRGVLEWYLLPPASRYSPQHPKEIVTLLDDNVLYNPPMERDPSAGDEEPTSTFELGL
TDRQRREREGVVLPYFDAQHNDGPGEGGRILYDMGEEDDFDEEEDEI*
Coding >Pro_DTO377G3_2|g6995.t1
ATGGCCCCTATCAATCTTTCACACAGGCGAACGCACAACTTACTCTTGATTTCGAAACTCTTGAGCTTGCGTGAC
ACTGCATCGCCCCTCACGCTTGTCTTAGATTCTTTGGAGCAACCGGCTACGCCACTCCTGAAAGAATATATCAGA
CGTGCAAAGCTATCCAAAGTCCATGTCACACTCGTCGCTTTTGAAACCCTGAAGCAACCGGATGGAGTCGATGCT
TTTGTATCAACACGCCGCAAGAGCCCTGCCGATATAGTTAAAGAAGTGAGCGCAGTTTATCAGCCTGTTGCAGCC
TCCAACTCCTCACGCAGGCGTCTTATCCTCATTGACTCTATTAACCCCCTTCTGAACTCAAAAAGAGTCGACCCT
GGATTTGATTTACCCTCCTTCCTTGGCTCGATTATTGCTCCCACTTCGCCATCGGCCAAGGTTGATGTGTCACTC
GTGATGACACATCATCAAGATGTCCCCGAACTTCCACAGCAAAGTCCCTACTCACCATCTCCTATTTCTGTGTTG
ACATACCTCGCTACGAGCATCATCACACTTCATTCGTTCTCGCACGTTCTAGCACAGAAGGCTGCTCGCGACCGC
AGTCTGGCTCCTCCAGTCTTCGGGCTTGAGGAAGAGCAAGAAGGCATTCTCCTCGGCCGATTGGACAGATTGGCT
GGTACTGGCCAAGCCGAGGGAATTGTTATTGAACTGGAGCACAGGCGGAAGAGTGGCCGTGGTGTACTGGAATGG
TACCTTCTCCCGCCTGCCTCACGGTATTCGCCACAGCATCCGAAAGAGATCGTGACGTTGCTTGACGATAATGTT
CTGTACAATCCTCCTATGGAGCGAGATCCAAGCGCGGGTGATGAGGAACCAACGTCGACCTTTGAGCTGGGTCTC
ACCGACCGACAGAGGCGCGAAAGAGAAGGTGTTGTGTTGCCGTACTTCGACGCACAGCATAACGATGGCCCAGGC
GAAGGAGGTCGGATTCTTTACGACATGGGAGAGGAAGACGATTTCGATGAAGAAGAGGATGAGATTTAG
Transcript >Pro_DTO377G3_2|g6995.t1
ATGGCCCCTATCAATCTTTCACACAGGCGAACGCACAACTTACTCTTGATTTCGAAACTCTTGAGCTTGCGTGAC
ACTGCATCGCCCCTCACGCTTGTCTTAGATTCTTTGGAGCAACCGGCTACGCCACTCCTGAAAGAATATATCAGA
CGTGCAAAGCTATCCAAAGTCCATGTCACACTCGTCGCTTTTGAAACCCTGAAGCAACCGGATGGAGTCGATGCT
TTTGTATCAACACGCCGCAAGAGCCCTGCCGATATAGTTAAAGAAGTGAGCGCAGTTTATCAGCCTGTTGCAGCC
TCCAACTCCTCACGCAGGCGTCTTATCCTCATTGACTCTATTAACCCCCTTCTGAACTCAAAAAGAGTCGACCCT
GGATTTGATTTACCCTCCTTCCTTGGCTCGATTATTGCTCCCACTTCGCCATCGGCCAAGGTTGATGTGTCACTC
GTGATGACACATCATCAAGATGTCCCCGAACTTCCACAGCAAAGTCCCTACTCACCATCTCCTATTTCTGTGTTG
ACATACCTCGCTACGAGCATCATCACACTTCATTCGTTCTCGCACGTTCTAGCACAGAAGGCTGCTCGCGACCGC
AGTCTGGCTCCTCCAGTCTTCGGGCTTGAGGAAGAGCAAGAAGGCATTCTCCTCGGCCGATTGGACAGATTGGCT
GGTACTGGCCAAGCCGAGGGAATTGTTATTGAACTGGAGCACAGGCGGAAGAGTGGCCGTGGTGTACTGGAATGG
TACCTTCTCCCGCCTGCCTCACGGTATTCGCCACAGCATCCGAAAGAGATCGTGACGTTGCTTGACGATAATGTT
CTGTACAATCCTCCTATGGAGCGAGATCCAAGCGCGGGTGATGAGGAACCAACGTCGACCTTTGAGCTGGGTCTC
ACCGACCGACAGAGGCGCGAAAGAGAAGGTGTTGTGTTGCCGTACTTCGACGCACAGCATAACGATGGCCCAGGC
GAAGGAGGTCGGATTCTTTACGACATGGGAGAGGAAGACGATTTCGATGAAGAAGAGGATGAGATTTAG
Gene >Pro_DTO377G3_2|g6995.t1
ATGGCCCCTATCAATCTTTCACACAGGCGAACGCACAACTTACTCTTGATTTCGAAACTCTTGAGCTTGCGTGAC
ACTGCATCGCCCCTCACGCTTGTCTTAGATTCTTTGGAGCAACCGGCTACGCCACTCCTGAAAGAATATATCAGA
CGTGCAAAGGTATATTGGCTGAAAATTATACCACTAGCGACATCTGGCTCACTAGGTACGGGGTGGACAGCCATG
CTGACTAGTTCGACAGCTATCCAAAGTCCATGTCACACTCGTCGCTTTTGAAACCCTGAAGCAACCGGATGGAGT
CGATGCTTTTGTATCAACACGCCGCAAGAGCCCTGCCGATATAGTTAAAGAAGTGAGCGCAGTTTATCAGCCTGT
TGCAGCCTCCAACTCCTCACGCAGTAAGCATTGTGGATTTAACCCCGCTAGTGGACGCATACTTACTGCCCGAGT
AGGGCGTCTTATCCTCATTGACTCTATTAACCCCCTTCTGAACTCAAAAAGAGTCGACCCTGGATTTGATTTACC
CTCCTTCCTTGGCTCGATTATTGCTCCCACTTCGCCATCGGCCAAGGTTGATGTGTCACTCGTGATGACACATCA
TCAAGATGTCCCCGAACTTCCACAGCAAAGTCCCTACTCACCATCTCCTATTTCTGTGTTGACATACCTCGCTAC
GAGCATCATCACACTTCATTCGTTCTCGCACGTTCTAGCACAGAAGGCTGCTCGCGACCGCAGTCTGGCTCCTCC
AGTCTTCGGGCTTGAGGAAGAGCAAGAAGGCATTCTCCTCGGCCGATTGGACAGATTGGCTGGTACTGGCCAAGC
CGAGGGAATTGTTATTGAACTGGAGCACAGGCGGAAGAGTGGCCGTGGTGTACTGGAATGGTACCTTCTCCCGCC
TGCCTCACGGTATTCGCCACAGCATCCGAAAGAGATCGTGACGTTGCTTGACGATAATGTTCTGTACAATCCTCC
TATGGAGCGAGATCCAAGCGCGGGTGATGAGGAACCAACGTCGACCTTTGAGCTGGGTCTCACCGACCGACAGAG
GCGCGAAAGAGAAGGTGTTGTGTTGCCGTACTTCGACGCACAGCATAACGATGGCCCAGGCGAAGGAGGTCGGAT
TCTTTACGACATGGGAGAGGAAGACGATTTCGATGAAGAAGAGGATGAGATTTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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