© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6994.t1 |
| Gene name | |
| Location | scaffold_20:177834..179439 |
| Strand | + |
| Gene length (bp) | 1605 |
| Transcript length (bp) | 1605 |
| Coding sequence length (bp) | 1605 |
| Protein length (aa) | 535 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00083 | Sugar_tr | Sugar (and other) transporter | 7.4E-86 | 51 | 502 |
| PF07690 | MFS_1 | Major Facilitator Superfamily | 3.2E-17 | 56 | 448 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 47 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 126 | 143 | 17 |
| 2 | 147 | 169 | 22 |
| 3 | 176 | 198 | 22 |
| 4 | 213 | 235 | 22 |
| 5 | 304 | 326 | 22 |
| 6 | 341 | 363 | 22 |
| 7 | 368 | 390 | 22 |
| 8 | 400 | 422 | 22 |
| 9 | 435 | 453 | 18 |
| 10 | 463 | 485 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 12.07 | 5.53 | 18.60 |
| 5d_25C | Five days - 25 degrees Celsius | 6.33 | 2.26 | 10.39 |
| 7d_25C | Seven days - 25 degrees Celsius | 3.77 | 1.16 | 6.38 |
| 10d_25C | Ten days - 25 degrees Celsius | 2.56 | 0.65 | 4.48 |
| 7d_15C | Seven days - 15 degrees Celsius | 4.68 | 1.52 | 7.85 |
| 7d_30C | Seven days - 30 degrees Celsius | 19.72 | 10.15 | 29.29 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.051467 | no |
| 3d_25C | 7d_25C | 0.000700 | yes |
| 3d_25C | 7d_15C | 0.005235 | yes |
| 3d_25C | 7d_30C | 0.080003 | no |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.171349 | no |
| 5d_25C | 7d_15C | 0.498337 | no |
| 5d_25C | 7d_30C | 0.000700 | yes |
| 5d_25C | 10d_25C | 0.014676 | yes |
| 7d_25C | 7d_15C | 0.656774 | no |
| 7d_25C | 7d_30C | 0.000700 | yes |
| 7d_25C | 10d_25C | 0.378317 | no |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.133446 | no |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6994.t1 MVSMDDESASMDGKVSPVLAEGRLASRKEQSMTLWQALRLYPKAVGWSVLLSSTLIMEGYDLALLSSMYASPAFN QKFGEQTASGKWAVPASWQSGLSNGARCGEVIGLLINGLVSERLGYRKTMVCALTTITAVIFLFFFAVNIQMLLA AEILAGIPWGIFQTLPAAYASEVCPVVLRPYLTTFINMCWVFGQFVAIGVNRGSISRDDQWAWRIPFGVQWVWPI PIIIGCLFAPESPWWHVRRGNVQGARRALQRLTSSNDPNFDPEETIAMIQHTNELEKSLSSGTTYWDCFKGTNLR RTEVVCLVWLVQTLCGQNLMGYFAYFCVQAGLPTVQSFNLSLGQYGLGVLGTIGSWFLMSYAGRRTIHISGLASL FVLLVITGSLSFAPGDNNAAKWAIGVMLIIFTFCYDISVGPVTYSLVSELSSTRLKAKTIVLARCLYNISNIVVN VLTNYQLNSTAWNWGARCAYFWAGTCLASLVWAFFRLPEPKGRTYEELDLLFERGVPARKFATTVVDPYEGEATE VHEAHADKD* |
| Coding | >Pro_DTO377G3_2|g6994.t1 ATGGTGTCCATGGACGACGAATCCGCGAGCATGGACGGCAAAGTCTCCCCTGTCCTTGCAGAAGGCAGACTAGCA TCCAGGAAGGAGCAGTCCATGACTCTCTGGCAGGCTCTGCGGCTATACCCAAAAGCCGTTGGCTGGTCAGTCCTC CTTTCGTCCACTCTGATCATGGAAGGGTACGATCTCGCATTGTTGAGCTCAATGTACGCATCACCCGCGTTCAAC CAGAAGTTCGGAGAACAGACTGCCTCGGGGAAATGGGCTGTTCCGGCATCTTGGCAATCCGGCCTTTCTAATGGG GCACGCTGTGGTGAAGTCATTGGGCTTCTGATCAATGGTCTGGTCTCTGAGCGCCTGGGATATCGAAAGACCATG GTCTGTGCCTTGACCACCATCACAGCAGTCATTTTTCTGTTTTTCTTCGCAGTCAATATTCAGATGTTGCTGGCC GCCGAGATTCTCGCGGGTATCCCTTGGGGTATCTTCCAGACTTTGCCAGCCGCATACGCCTCCGAGGTTTGTCCG GTAGTCCTGCGACCTTATCTGACCACTTTCATCAATATGTGTTGGGTATTTGGGCAGTTCGTGGCTATTGGCGTC AACCGCGGTTCTATTTCTCGCGATGATCAATGGGCCTGGCGCATTCCTTTCGGTGTGCAATGGGTGTGGCCAATC CCAATCATTATCGGCTGTCTTTTCGCACCTGAATCCCCTTGGTGGCATGTGCGTCGGGGTAATGTGCAAGGAGCC CGACGAGCGTTGCAGCGGTTGACATCGTCCAATGACCCCAACTTTGACCCCGAAGAGACGATTGCTATGATTCAA CACACCAATGAGTTGGAGAAATCACTTTCCAGTGGGACCACATATTGGGATTGCTTCAAGGGAACAAATCTTCGA CGGACTGAGGTAGTTTGTCTTGTCTGGTTAGTGCAGACCCTATGTGGCCAGAATTTGATGGGTTATTTCGCCTAT TTCTGTGTCCAAGCAGGACTGCCTACCGTTCAATCTTTCAATCTATCCCTGGGACAATACGGCCTCGGCGTTTTA GGCACAATTGGATCGTGGTTCCTAATGTCCTACGCGGGCCGACGAACTATCCACATCTCCGGTCTCGCCAGTCTT TTCGTCCTTCTGGTCATCACGGGATCTCTTTCTTTTGCACCGGGAGACAACAACGCAGCTAAATGGGCAATCGGC GTGATGCTAATCATTTTCACATTCTGTTATGACATCAGCGTCGGCCCTGTCACATACTCTCTAGTCTCAGAACTA TCTTCCACTCGTCTCAAAGCAAAGACGATCGTCCTCGCCCGGTGTCTATACAATATCAGTAACATTGTCGTCAAT GTCCTGACCAACTATCAGCTTAACTCCACAGCCTGGAACTGGGGTGCTCGGTGTGCCTATTTCTGGGCTGGTACG TGTCTAGCCTCCCTGGTCTGGGCATTCTTCCGGCTCCCCGAGCCAAAAGGACGCACATATGAGGAGTTGGATTTG CTCTTCGAGCGCGGAGTTCCGGCGAGGAAATTCGCGACCACCGTTGTTGATCCATATGAAGGAGAGGCGACAGAG GTCCATGAGGCTCATGCGGATAAAGATTGA |
| Transcript | >Pro_DTO377G3_2|g6994.t1 ATGGTGTCCATGGACGACGAATCCGCGAGCATGGACGGCAAAGTCTCCCCTGTCCTTGCAGAAGGCAGACTAGCA TCCAGGAAGGAGCAGTCCATGACTCTCTGGCAGGCTCTGCGGCTATACCCAAAAGCCGTTGGCTGGTCAGTCCTC CTTTCGTCCACTCTGATCATGGAAGGGTACGATCTCGCATTGTTGAGCTCAATGTACGCATCACCCGCGTTCAAC CAGAAGTTCGGAGAACAGACTGCCTCGGGGAAATGGGCTGTTCCGGCATCTTGGCAATCCGGCCTTTCTAATGGG GCACGCTGTGGTGAAGTCATTGGGCTTCTGATCAATGGTCTGGTCTCTGAGCGCCTGGGATATCGAAAGACCATG GTCTGTGCCTTGACCACCATCACAGCAGTCATTTTTCTGTTTTTCTTCGCAGTCAATATTCAGATGTTGCTGGCC GCCGAGATTCTCGCGGGTATCCCTTGGGGTATCTTCCAGACTTTGCCAGCCGCATACGCCTCCGAGGTTTGTCCG GTAGTCCTGCGACCTTATCTGACCACTTTCATCAATATGTGTTGGGTATTTGGGCAGTTCGTGGCTATTGGCGTC AACCGCGGTTCTATTTCTCGCGATGATCAATGGGCCTGGCGCATTCCTTTCGGTGTGCAATGGGTGTGGCCAATC CCAATCATTATCGGCTGTCTTTTCGCACCTGAATCCCCTTGGTGGCATGTGCGTCGGGGTAATGTGCAAGGAGCC CGACGAGCGTTGCAGCGGTTGACATCGTCCAATGACCCCAACTTTGACCCCGAAGAGACGATTGCTATGATTCAA CACACCAATGAGTTGGAGAAATCACTTTCCAGTGGGACCACATATTGGGATTGCTTCAAGGGAACAAATCTTCGA CGGACTGAGGTAGTTTGTCTTGTCTGGTTAGTGCAGACCCTATGTGGCCAGAATTTGATGGGTTATTTCGCCTAT TTCTGTGTCCAAGCAGGACTGCCTACCGTTCAATCTTTCAATCTATCCCTGGGACAATACGGCCTCGGCGTTTTA GGCACAATTGGATCGTGGTTCCTAATGTCCTACGCGGGCCGACGAACTATCCACATCTCCGGTCTCGCCAGTCTT TTCGTCCTTCTGGTCATCACGGGATCTCTTTCTTTTGCACCGGGAGACAACAACGCAGCTAAATGGGCAATCGGC GTGATGCTAATCATTTTCACATTCTGTTATGACATCAGCGTCGGCCCTGTCACATACTCTCTAGTCTCAGAACTA TCTTCCACTCGTCTCAAAGCAAAGACGATCGTCCTCGCCCGGTGTCTATACAATATCAGTAACATTGTCGTCAAT GTCCTGACCAACTATCAGCTTAACTCCACAGCCTGGAACTGGGGTGCTCGGTGTGCCTATTTCTGGGCTGGTACG TGTCTAGCCTCCCTGGTCTGGGCATTCTTCCGGCTCCCCGAGCCAAAAGGACGCACATATGAGGAGTTGGATTTG CTCTTCGAGCGCGGAGTTCCGGCGAGGAAATTCGCGACCACCGTTGTTGATCCATATGAAGGAGAGGCGACAGAG GTCCATGAGGCTCATGCGGATAAAGATTGA |
| Gene | >Pro_DTO377G3_2|g6994.t1 ATGGTGTCCATGGACGACGAATCCGCGAGCATGGACGGCAAAGTCTCCCCTGTCCTTGCAGAAGGCAGACTAGCA TCCAGGAAGGAGCAGTCCATGACTCTCTGGCAGGCTCTGCGGCTATACCCAAAAGCCGTTGGCTGGTCAGTCCTC CTTTCGTCCACTCTGATCATGGAAGGGTACGATCTCGCATTGTTGAGCTCAATGTACGCATCACCCGCGTTCAAC CAGAAGTTCGGAGAACAGACTGCCTCGGGGAAATGGGCTGTTCCGGCATCTTGGCAATCCGGCCTTTCTAATGGG GCACGCTGTGGTGAAGTCATTGGGCTTCTGATCAATGGTCTGGTCTCTGAGCGCCTGGGATATCGAAAGACCATG GTCTGTGCCTTGACCACCATCACAGCAGTCATTTTTCTGTTTTTCTTCGCAGTCAATATTCAGATGTTGCTGGCC GCCGAGATTCTCGCGGGTATCCCTTGGGGTATCTTCCAGACTTTGCCAGCCGCATACGCCTCCGAGGTTTGTCCG GTAGTCCTGCGACCTTATCTGACCACTTTCATCAATATGTGTTGGGTATTTGGGCAGTTCGTGGCTATTGGCGTC AACCGCGGTTCTATTTCTCGCGATGATCAATGGGCCTGGCGCATTCCTTTCGGTGTGCAATGGGTGTGGCCAATC CCAATCATTATCGGCTGTCTTTTCGCACCTGAATCCCCTTGGTGGCATGTGCGTCGGGGTAATGTGCAAGGAGCC CGACGAGCGTTGCAGCGGTTGACATCGTCCAATGACCCCAACTTTGACCCCGAAGAGACGATTGCTATGATTCAA CACACCAATGAGTTGGAGAAATCACTTTCCAGTGGGACCACATATTGGGATTGCTTCAAGGGAACAAATCTTCGA CGGACTGAGGTAGTTTGTCTTGTCTGGTTAGTGCAGACCCTATGTGGCCAGAATTTGATGGGTTATTTCGCCTAT TTCTGTGTCCAAGCAGGACTGCCTACCGTTCAATCTTTCAATCTATCCCTGGGACAATACGGCCTCGGCGTTTTA GGCACAATTGGATCGTGGTTCCTAATGTCCTACGCGGGCCGACGAACTATCCACATCTCCGGTCTCGCCAGTCTT TTCGTCCTTCTGGTCATCACGGGATCTCTTTCTTTTGCACCGGGAGACAACAACGCAGCTAAATGGGCAATCGGC GTGATGCTAATCATTTTCACATTCTGTTATGACATCAGCGTCGGCCCTGTCACATACTCTCTAGTCTCAGAACTA TCTTCCACTCGTCTCAAAGCAAAGACGATCGTCCTCGCCCGGTGTCTATACAATATCAGTAACATTGTCGTCAAT GTCCTGACCAACTATCAGCTTAACTCCACAGCCTGGAACTGGGGTGCTCGGTGTGCCTATTTCTGGGCTGGTACG TGTCTAGCCTCCCTGGTCTGGGCATTCTTCCGGCTCCCCGAGCCAAAAGGACGCACATATGAGGAGTTGGATTTG CTCTTCGAGCGCGGAGTTCCGGCGAGGAAATTCGCGACCACCGTTGTTGATCCATATGAAGGAGAGGCGACAGAG GTCCATGAGGCTCATGCGGATAAAGATTGA |