© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6991.t1 |
| Gene name | |
| Location | scaffold_20:169292..170593 |
| Strand | - |
| Gene length (bp) | 1301 |
| Transcript length (bp) | 1227 |
| Coding sequence length (bp) | 1227 |
| Protein length (aa) | 409 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01266 | DAO | FAD dependent oxidoreductase | 2.6E-68 | 10 | 387 |
| PF13450 | NAD_binding_8 | NAD(P)-binding Rossmann-like domain | 9.8E-05 | 12 | 50 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 24 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 483.14 | 278.62 | 687.67 |
| 5d_25C | Five days - 25 degrees Celsius | 586.08 | 326.61 | 845.55 |
| 7d_25C | Seven days - 25 degrees Celsius | 539.98 | 301.60 | 778.36 |
| 10d_25C | Ten days - 25 degrees Celsius | 762.33 | 413.96 | 1110.70 |
| 7d_15C | Seven days - 15 degrees Celsius | 768.39 | 397.87 | 1138.91 |
| 7d_30C | Seven days - 30 degrees Celsius | 479.36 | 263.47 | 695.24 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.490474 | no |
| 3d_25C | 7d_25C | 0.721475 | no |
| 3d_25C | 7d_15C | 0.053871 | no |
| 3d_25C | 7d_30C | 0.985232 | no |
| 3d_25C | 10d_25C | 0.051659 | no |
| 5d_25C | 7d_25C | 0.811093 | no |
| 5d_25C | 7d_15C | 0.327971 | no |
| 5d_25C | 7d_30C | 0.479192 | no |
| 5d_25C | 10d_25C | 0.333742 | no |
| 7d_25C | 7d_15C | 0.170122 | no |
| 7d_25C | 7d_30C | 0.711321 | no |
| 7d_25C | 10d_25C | 0.171662 | no |
| 7d_15C | 7d_30C | 0.050897 | no |
| 7d_15C | 10d_25C | 0.984727 | no |
| 7d_30C | 10d_25C | 0.049750 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6991.t1 MSATGDRREIVIVGGGIIGCCSAYYLTRHPSYDPTRHKITLIEACEIAGAASGKAGGMLAQWAFPSNIVGLSYKL HAELAKEHDGINRWGYREVNCGQLVVRGRALAEHTAGKSGGGDRESLLKRSAAAMSKLKSAKIPQDLDWIEPDLL RSYENMSGPGETAQVHPYFFTTSIAKLAQDEGASIILGQVTDIDRSKGSVQSVTYTDKTSGETKTITATDVLVAA GPWTKTILPEVPISGMRAHSVVIQPKKPVSAYCLFTNIEIPADFNPEKKSRPTVAAPEIYARPDDTVYACGDGDR TVSLPKTSADVQVDQTRCQEIIDHVGSISDELRDGEVRARQACYLPNCETGGGPLIGLTDVKGLYVAAGHTCWGI QNAPGTGKLMSEFVFDGKAKSANIGSLDPRNFI* |
| Coding | >Pro_DTO377G3_2|g6991.t1 ATGTCAGCAACAGGAGATCGGCGTGAGATTGTTATTGTTGGTGGTGGCATCATTGGATGCTGCTCTGCATATTAC CTCACAAGACACCCGTCATACGACCCTACCCGTCACAAGATTACACTCATTGAGGCCTGTGAAATCGCCGGCGCT GCATCAGGCAAAGCGGGTGGCATGCTGGCGCAATGGGCTTTCCCAAGCAACATCGTTGGTCTCAGCTACAAACTG CATGCCGAACTTGCAAAAGAGCACGATGGTATCAATCGATGGGGATACAGAGAGGTCAATTGTGGCCAACTCGTC GTGAGAGGTCGTGCTCTTGCCGAGCACACTGCAGGGAAATCCGGGGGTGGAGATAGGGAATCTCTGCTGAAACGC AGTGCAGCGGCTATGTCGAAGCTGAAGTCTGCCAAAATCCCCCAGGACTTGGATTGGATTGAGCCGGATCTTCTG CGGTCCTATGAAAATATGAGTGGACCGGGCGAAACTGCTCAAGTGCACCCATACTTCTTCACTACCTCTATTGCA AAGCTCGCCCAGGACGAGGGCGCAAGTATCATTCTTGGACAGGTTACAGATATTGATCGGTCCAAGGGTTCTGTG CAGTCAGTGACATACACTGATAAGACATCAGGTGAAACAAAAACCATCACCGCAACCGATGTGCTCGTTGCTGCT GGTCCCTGGACGAAGACTATCCTCCCAGAGGTCCCCATCTCAGGCATGCGGGCCCACAGCGTGGTGATCCAGCCA AAGAAACCAGTCAGCGCATACTGCCTGTTTACAAACATCGAAATCCCGGCCGACTTCAACCCCGAAAAGAAGTCA CGCCCAACTGTGGCTGCGCCAGAGATCTACGCGCGCCCTGATGACACCGTCTATGCATGTGGCGACGGAGATAGA ACGGTCTCATTACCAAAGACTTCTGCAGATGTCCAGGTTGACCAGACGCGCTGCCAGGAAATCATAGATCATGTG GGTAGCATTTCTGACGAGCTGCGCGACGGAGAGGTTCGCGCTCGCCAGGCTTGCTATCTTCCTAACTGTGAAACT GGCGGTGGGCCACTAATTGGCTTGACCGATGTAAAGGGACTGTATGTTGCAGCTGGCCATACCTGCTGGGGTATC CAGAATGCGCCGGGTACAGGGAAGCTCATGAGTGAGTTTGTATTTGATGGCAAGGCGAAGAGCGCAAACATTGGA TCGTTGGATCCACGAAACTTCATCTGA |
| Transcript | >Pro_DTO377G3_2|g6991.t1 ATGTCAGCAACAGGAGATCGGCGTGAGATTGTTATTGTTGGTGGTGGCATCATTGGATGCTGCTCTGCATATTAC CTCACAAGACACCCGTCATACGACCCTACCCGTCACAAGATTACACTCATTGAGGCCTGTGAAATCGCCGGCGCT GCATCAGGCAAAGCGGGTGGCATGCTGGCGCAATGGGCTTTCCCAAGCAACATCGTTGGTCTCAGCTACAAACTG CATGCCGAACTTGCAAAAGAGCACGATGGTATCAATCGATGGGGATACAGAGAGGTCAATTGTGGCCAACTCGTC GTGAGAGGTCGTGCTCTTGCCGAGCACACTGCAGGGAAATCCGGGGGTGGAGATAGGGAATCTCTGCTGAAACGC AGTGCAGCGGCTATGTCGAAGCTGAAGTCTGCCAAAATCCCCCAGGACTTGGATTGGATTGAGCCGGATCTTCTG CGGTCCTATGAAAATATGAGTGGACCGGGCGAAACTGCTCAAGTGCACCCATACTTCTTCACTACCTCTATTGCA AAGCTCGCCCAGGACGAGGGCGCAAGTATCATTCTTGGACAGGTTACAGATATTGATCGGTCCAAGGGTTCTGTG CAGTCAGTGACATACACTGATAAGACATCAGGTGAAACAAAAACCATCACCGCAACCGATGTGCTCGTTGCTGCT GGTCCCTGGACGAAGACTATCCTCCCAGAGGTCCCCATCTCAGGCATGCGGGCCCACAGCGTGGTGATCCAGCCA AAGAAACCAGTCAGCGCATACTGCCTGTTTACAAACATCGAAATCCCGGCCGACTTCAACCCCGAAAAGAAGTCA CGCCCAACTGTGGCTGCGCCAGAGATCTACGCGCGCCCTGATGACACCGTCTATGCATGTGGCGACGGAGATAGA ACGGTCTCATTACCAAAGACTTCTGCAGATGTCCAGGTTGACCAGACGCGCTGCCAGGAAATCATAGATCATGTG GGTAGCATTTCTGACGAGCTGCGCGACGGAGAGGTTCGCGCTCGCCAGGCTTGCTATCTTCCTAACTGTGAAACT GGCGGTGGGCCACTAATTGGCTTGACCGATGTAAAGGGACTGTATGTTGCAGCTGGCCATACCTGCTGGGGTATC CAGAATGCGCCGGGTACAGGGAAGCTCATGAGTGAGTTTGTATTTGATGGCAAGGCGAAGAGCGCAAACATTGGA TCGTTGGATCCACGAAACTTCATCTGA |
| Gene | >Pro_DTO377G3_2|g6991.t1 ATGTCAGCAACAGGAGATCGGCGTGAGATTGTTATTGTTGGTAAGAACATATTGTTTGCGCGACTTTCCTACCCC GCATGTTTATTCGCAACTTGCTAACCACAATCCTCACAGGTGGTGGCATCATTGGATGCTGCTCTGCATATTACC TCACAAGACACCCGTCATACGACCCTACCCGTCACAAGATTACACTCATTGAGGCCTGTGAAATCGCCGGCGCTG CATCAGGCAAAGCGGGTGGCATGCTGGCGCAATGGGCTTTCCCAAGCAACATCGTTGGTCTCAGCTACAAACTGC ATGCCGAACTTGCAAAAGAGCACGATGGTATCAATCGATGGGGATACAGAGAGGTCAATTGTGGCCAACTCGTCG TGAGAGGTCGTGCTCTTGCCGAGCACACTGCAGGGAAATCCGGGGGTGGAGATAGGGAATCTCTGCTGAAACGCA GTGCAGCGGCTATGTCGAAGCTGAAGTCTGCCAAAATCCCCCAGGACTTGGATTGGATTGAGCCGGATCTTCTGC GGTCCTATGAAAATATGAGTGGACCGGGCGAAACTGCTCAAGTGCACCCATACTTCTTCACTACCTCTATTGCAA AGCTCGCCCAGGACGAGGGCGCAAGTATCATTCTTGGACAGGTTACAGATATTGATCGGTCCAAGGGTTCTGTGC AGTCAGTGACATACACTGATAAGACATCAGGTGAAACAAAAACCATCACCGCAACCGATGTGCTCGTTGCTGCTG GTCCCTGGACGAAGACTATCCTCCCAGAGGTCCCCATCTCAGGCATGCGGGCCCACAGCGTGGTGATCCAGCCAA AGAAACCAGTCAGCGCATACTGCCTGTTTACAAACATCGAAATCCCGGCCGACTTCAACCCCGAAAAGAAGTCAC GCCCAACTGTGGCTGCGCCAGAGATCTACGCGCGCCCTGATGACACCGTCTATGCATGTGGCGACGGAGATAGAA CGGTCTCATTACCAAAGACTTCTGCAGATGTCCAGGTTGACCAGACGCGCTGCCAGGAAATCATAGATCATGTGG GTAGCATTTCTGACGAGCTGCGCGACGGAGAGGTTCGCGCTCGCCAGGCTTGCTATCTTCCTAACTGTGAAACTG GCGGTGGGCCACTAATTGGCTTGACCGATGTAAAGGGACTGTATGTTGCAGCTGGCCATACCTGCTGGGGTATCC AGAATGCGCCGGGTACAGGGAAGCTCATGAGTGAGTTTGTATTTGATGGCAAGGCGAAGAGCGCAAACATTGGAT CGTTGGATCCACGAAACTTCATCTGA |