© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6986.t1 |
| Gene name | |
| Location | scaffold_20:157878..159867 |
| Strand | + |
| Gene length (bp) | 1989 |
| Transcript length (bp) | 1989 |
| Coding sequence length (bp) | 1989 |
| Protein length (aa) | 663 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05773 | RWD | RWD domain | 1.5E-18 | 10 | 153 |
| PF01485 | IBR | IBR domain, a half RING-finger domain | 3.3E-14 | 288 | 385 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0005488 | binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 40 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 43.47 | 26.37 | 60.57 |
| 5d_25C | Five days - 25 degrees Celsius | 53.18 | 32.34 | 74.03 |
| 7d_25C | Seven days - 25 degrees Celsius | 48.90 | 29.72 | 68.08 |
| 10d_25C | Ten days - 25 degrees Celsius | 56.09 | 34.16 | 78.02 |
| 7d_15C | Seven days - 15 degrees Celsius | 60.95 | 36.52 | 85.39 |
| 7d_30C | Seven days - 30 degrees Celsius | 50.33 | 30.43 | 70.22 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.414269 | no |
| 3d_25C | 7d_25C | 0.677436 | no |
| 3d_25C | 7d_15C | 0.124050 | no |
| 3d_25C | 7d_30C | 0.581870 | no |
| 3d_25C | 10d_25C | 0.275038 | no |
| 5d_25C | 7d_25C | 0.781089 | no |
| 5d_25C | 7d_15C | 0.620882 | no |
| 5d_25C | 7d_30C | 0.861778 | no |
| 5d_25C | 10d_25C | 0.870229 | no |
| 7d_25C | 7d_15C | 0.365477 | no |
| 7d_25C | 7d_30C | 0.931685 | no |
| 7d_25C | 10d_25C | 0.611676 | no |
| 7d_15C | 7d_30C | 0.447910 | no |
| 7d_15C | 10d_25C | 0.783694 | no |
| 7d_30C | 10d_25C | 0.703828 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6986.t1 MTELDFPEDERSVELSSIAAIFPEIQIDPSSPFKAVLDLPVAPSSPTSICFQQPLDPAAAAITPPTSLDESKGEL DQPPIKDIHLLSHLPPLNLEIELPEGYPTEKPPIVHLKTIPSWLPPSVIDQLSNDCNRLWEECGKDLVVFTYIDH LQQLAETAFNIQNPSGEIYLSRDLKIGLLDYNKNAEREKFEQGTFECGVCLEPKKGTICHRLLRCSHVFCIQCLQ DFYNCCITEGDVDSVKCMAPDCEYNKRPVAVPGDGQTPPRKKRDRTLGPSELLQIPLETEMVQRYAFLKRKKKIE ADKTTVYCPRQWCQGAARSKRHPKPEDPMSDDLDSSDEEDGSEARGEVNDGELPPMAERVSICEDCNYAFCCVCK KGWHGELVRCFPRRDGEPTEEEKATEEYLRLYTTPCPTCNVPCQKQMGCNHMRCFQCDTHFCYLCSAWLSADNPY KHFNDEKGQCYNRLWDLEGGDGINPDGAEALHRIPDALLDFDDDPPVVDIQEETDESDDDHPAFEFDDDEDDLHR HPPPPAPAPPQINRGGGRPGQRDHAAARAAAAERQAQARAMAEVRNRNARRQARRPVRWAEVPPHRLPPQAGDPR RPVQWAEVPAEPLADEDGPIRWEAIAIRPGRAQAHPGLQRFLDLVQNDREDEWDSDEMDDDF* |
| Coding | >Pro_DTO377G3_2|g6986.t1 ATGACCGAACTCGACTTTCCAGAGGATGAGCGCTCAGTCGAGCTTTCCTCGATAGCTGCCATCTTTCCAGAGATT CAAATCGATCCGTCCTCTCCGTTCAAAGCCGTTCTCGATCTTCCAGTCGCACCTTCCTCCCCGACCTCAATATGT TTTCAGCAACCGCTTGATCCTGCAGCTGCCGCCATCACCCCTCCAACCTCATTGGACGAGTCTAAGGGAGAATTA GACCAGCCGCCTATTAAAGACATCCATCTTCTCTCGCACCTACCTCCGCTTAACCTCGAGATTGAATTGCCAGAG GGTTATCCAACCGAAAAGCCGCCTATCGTCCATCTAAAAACGATCCCCTCGTGGCTACCTCCCTCCGTCATAGAT CAATTATCCAACGATTGCAACCGACTTTGGGAGGAATGCGGAAAGGATCTAGTCGTCTTTACCTATATTGACCAT CTCCAGCAGCTGGCAGAAACTGCTTTCAATATCCAGAATCCGTCGGGAGAAATATATTTATCGCGGGACTTGAAG ATCGGACTACTAGACTACAACAAAAATGCCGAGCGGGAAAAGTTTGAGCAGGGGACTTTCGAATGTGGGGTATGC CTTGAACCGAAGAAGGGCACCATTTGCCATCGATTACTTCGCTGCTCCCACGTATTCTGCATTCAATGCTTGCAG GATTTCTACAATTGCTGCATCACCGAGGGTGATGTTGACAGTGTGAAATGCATGGCGCCGGATTGCGAATACAAC AAGAGACCTGTAGCTGTACCGGGCGACGGCCAGACCCCGCCCCGCAAGAAGCGTGATCGTACTCTGGGACCAAGC GAGCTACTCCAGATTCCTTTGGAAACTGAAATGGTTCAGCGATATGCATTCCTCAAGAGGAAGAAGAAGATTGAA GCCGATAAAACCACAGTCTATTGTCCACGACAATGGTGCCAGGGAGCTGCACGTTCCAAGCGGCACCCCAAGCCA GAAGATCCTATGTCGGATGACTTGGATAGTTCTGACGAAGAAGATGGATCCGAGGCCCGCGGCGAAGTGAACGAT GGAGAGCTTCCTCCTATGGCGGAGCGTGTGTCTATCTGCGAAGACTGCAACTACGCATTCTGCTGCGTCTGTAAG AAGGGCTGGCATGGTGAACTGGTACGCTGTTTCCCACGCCGCGACGGCGAGCCCACGGAGGAAGAAAAAGCGACC GAAGAGTACTTGCGTCTGTACACTACCCCTTGTCCGACTTGCAATGTGCCCTGCCAAAAGCAAATGGGATGCAAT CACATGCGCTGCTTCCAGTGTGACACACACTTCTGCTACCTTTGCTCGGCCTGGCTGAGTGCAGACAACCCATAC AAACATTTCAACGACGAGAAAGGCCAATGTTACAATCGTCTTTGGGATTTGGAAGGTGGTGATGGCATCAACCCC GACGGGGCTGAAGCACTTCACCGCATCCCAGACGCACTCCTAGACTTCGATGATGACCCACCTGTGGTAGACATT CAGGAAGAAACAGACGAAAGTGATGACGACCACCCTGCATTTGAATTTGATGATGATGAAGACGACCTTCACCGA CATCCTCCTCCTCCCGCACCCGCTCCGCCCCAAATTAACCGCGGTGGCGGCAGACCTGGTCAACGTGACCACGCA GCTGCCCGCGCTGCTGCGGCTGAACGTCAGGCTCAAGCTCGCGCAATGGCCGAGGTACGAAACCGAAATGCGAGA CGACAAGCCAGACGCCCTGTTCGCTGGGCGGAAGTTCCTCCCCACCGTCTCCCTCCACAGGCAGGTGATCCTAGA CGTCCTGTACAGTGGGCAGAGGTTCCAGCAGAACCATTGGCAGACGAAGACGGCCCCATACGATGGGAGGCTATT GCAATCCGACCAGGTAGAGCGCAGGCACATCCTGGTCTTCAGCGATTTTTGGATCTAGTACAAAATGACCGTGAA GACGAATGGGATAGTGATGAGATGGACGATGACTTCTAG |
| Transcript | >Pro_DTO377G3_2|g6986.t1 ATGACCGAACTCGACTTTCCAGAGGATGAGCGCTCAGTCGAGCTTTCCTCGATAGCTGCCATCTTTCCAGAGATT CAAATCGATCCGTCCTCTCCGTTCAAAGCCGTTCTCGATCTTCCAGTCGCACCTTCCTCCCCGACCTCAATATGT TTTCAGCAACCGCTTGATCCTGCAGCTGCCGCCATCACCCCTCCAACCTCATTGGACGAGTCTAAGGGAGAATTA GACCAGCCGCCTATTAAAGACATCCATCTTCTCTCGCACCTACCTCCGCTTAACCTCGAGATTGAATTGCCAGAG GGTTATCCAACCGAAAAGCCGCCTATCGTCCATCTAAAAACGATCCCCTCGTGGCTACCTCCCTCCGTCATAGAT CAATTATCCAACGATTGCAACCGACTTTGGGAGGAATGCGGAAAGGATCTAGTCGTCTTTACCTATATTGACCAT CTCCAGCAGCTGGCAGAAACTGCTTTCAATATCCAGAATCCGTCGGGAGAAATATATTTATCGCGGGACTTGAAG ATCGGACTACTAGACTACAACAAAAATGCCGAGCGGGAAAAGTTTGAGCAGGGGACTTTCGAATGTGGGGTATGC CTTGAACCGAAGAAGGGCACCATTTGCCATCGATTACTTCGCTGCTCCCACGTATTCTGCATTCAATGCTTGCAG GATTTCTACAATTGCTGCATCACCGAGGGTGATGTTGACAGTGTGAAATGCATGGCGCCGGATTGCGAATACAAC AAGAGACCTGTAGCTGTACCGGGCGACGGCCAGACCCCGCCCCGCAAGAAGCGTGATCGTACTCTGGGACCAAGC GAGCTACTCCAGATTCCTTTGGAAACTGAAATGGTTCAGCGATATGCATTCCTCAAGAGGAAGAAGAAGATTGAA GCCGATAAAACCACAGTCTATTGTCCACGACAATGGTGCCAGGGAGCTGCACGTTCCAAGCGGCACCCCAAGCCA GAAGATCCTATGTCGGATGACTTGGATAGTTCTGACGAAGAAGATGGATCCGAGGCCCGCGGCGAAGTGAACGAT GGAGAGCTTCCTCCTATGGCGGAGCGTGTGTCTATCTGCGAAGACTGCAACTACGCATTCTGCTGCGTCTGTAAG AAGGGCTGGCATGGTGAACTGGTACGCTGTTTCCCACGCCGCGACGGCGAGCCCACGGAGGAAGAAAAAGCGACC GAAGAGTACTTGCGTCTGTACACTACCCCTTGTCCGACTTGCAATGTGCCCTGCCAAAAGCAAATGGGATGCAAT CACATGCGCTGCTTCCAGTGTGACACACACTTCTGCTACCTTTGCTCGGCCTGGCTGAGTGCAGACAACCCATAC AAACATTTCAACGACGAGAAAGGCCAATGTTACAATCGTCTTTGGGATTTGGAAGGTGGTGATGGCATCAACCCC GACGGGGCTGAAGCACTTCACCGCATCCCAGACGCACTCCTAGACTTCGATGATGACCCACCTGTGGTAGACATT CAGGAAGAAACAGACGAAAGTGATGACGACCACCCTGCATTTGAATTTGATGATGATGAAGACGACCTTCACCGA CATCCTCCTCCTCCCGCACCCGCTCCGCCCCAAATTAACCGCGGTGGCGGCAGACCTGGTCAACGTGACCACGCA GCTGCCCGCGCTGCTGCGGCTGAACGTCAGGCTCAAGCTCGCGCAATGGCCGAGGTACGAAACCGAAATGCGAGA CGACAAGCCAGACGCCCTGTTCGCTGGGCGGAAGTTCCTCCCCACCGTCTCCCTCCACAGGCAGGTGATCCTAGA CGTCCTGTACAGTGGGCAGAGGTTCCAGCAGAACCATTGGCAGACGAAGACGGCCCCATACGATGGGAGGCTATT GCAATCCGACCAGGTAGAGCGCAGGCACATCCTGGTCTTCAGCGATTTTTGGATCTAGTACAAAATGACCGTGAA GACGAATGGGATAGTGATGAGATGGACGATGACTTCTAG |
| Gene | >Pro_DTO377G3_2|g6986.t1 ATGACCGAACTCGACTTTCCAGAGGATGAGCGCTCAGTCGAGCTTTCCTCGATAGCTGCCATCTTTCCAGAGATT CAAATCGATCCGTCCTCTCCGTTCAAAGCCGTTCTCGATCTTCCAGTCGCACCTTCCTCCCCGACCTCAATATGT TTTCAGCAACCGCTTGATCCTGCAGCTGCCGCCATCACCCCTCCAACCTCATTGGACGAGTCTAAGGGAGAATTA GACCAGCCGCCTATTAAAGACATCCATCTTCTCTCGCACCTACCTCCGCTTAACCTCGAGATTGAATTGCCAGAG GGTTATCCAACCGAAAAGCCGCCTATCGTCCATCTAAAAACGATCCCCTCGTGGCTACCTCCCTCCGTCATAGAT CAATTATCCAACGATTGCAACCGACTTTGGGAGGAATGCGGAAAGGATCTAGTCGTCTTTACCTATATTGACCAT CTCCAGCAGCTGGCAGAAACTGCTTTCAATATCCAGAATCCGTCGGGAGAAATATATTTATCGCGGGACTTGAAG ATCGGACTACTAGACTACAACAAAAATGCCGAGCGGGAAAAGTTTGAGCAGGGGACTTTCGAATGTGGGGTATGC CTTGAACCGAAGAAGGGCACCATTTGCCATCGATTACTTCGCTGCTCCCACGTATTCTGCATTCAATGCTTGCAG GATTTCTACAATTGCTGCATCACCGAGGGTGATGTTGACAGTGTGAAATGCATGGCGCCGGATTGCGAATACAAC AAGAGACCTGTAGCTGTACCGGGCGACGGCCAGACCCCGCCCCGCAAGAAGCGTGATCGTACTCTGGGACCAAGC GAGCTACTCCAGATTCCTTTGGAAACTGAAATGGTTCAGCGATATGCATTCCTCAAGAGGAAGAAGAAGATTGAA GCCGATAAAACCACAGTCTATTGTCCACGACAATGGTGCCAGGGAGCTGCACGTTCCAAGCGGCACCCCAAGCCA GAAGATCCTATGTCGGATGACTTGGATAGTTCTGACGAAGAAGATGGATCCGAGGCCCGCGGCGAAGTGAACGAT GGAGAGCTTCCTCCTATGGCGGAGCGTGTGTCTATCTGCGAAGACTGCAACTACGCATTCTGCTGCGTCTGTAAG AAGGGCTGGCATGGTGAACTGGTACGCTGTTTCCCACGCCGCGACGGCGAGCCCACGGAGGAAGAAAAAGCGACC GAAGAGTACTTGCGTCTGTACACTACCCCTTGTCCGACTTGCAATGTGCCCTGCCAAAAGCAAATGGGATGCAAT CACATGCGCTGCTTCCAGTGTGACACACACTTCTGCTACCTTTGCTCGGCCTGGCTGAGTGCAGACAACCCATAC AAACATTTCAACGACGAGAAAGGCCAATGTTACAATCGTCTTTGGGATTTGGAAGGTGGTGATGGCATCAACCCC GACGGGGCTGAAGCACTTCACCGCATCCCAGACGCACTCCTAGACTTCGATGATGACCCACCTGTGGTAGACATT CAGGAAGAAACAGACGAAAGTGATGACGACCACCCTGCATTTGAATTTGATGATGATGAAGACGACCTTCACCGA CATCCTCCTCCTCCCGCACCCGCTCCGCCCCAAATTAACCGCGGTGGCGGCAGACCTGGTCAACGTGACCACGCA GCTGCCCGCGCTGCTGCGGCTGAACGTCAGGCTCAAGCTCGCGCAATGGCCGAGGTACGAAACCGAAATGCGAGA CGACAAGCCAGACGCCCTGTTCGCTGGGCGGAAGTTCCTCCCCACCGTCTCCCTCCACAGGCAGGTGATCCTAGA CGTCCTGTACAGTGGGCAGAGGTTCCAGCAGAACCATTGGCAGACGAAGACGGCCCCATACGATGGGAGGCTATT GCAATCCGACCAGGTAGAGCGCAGGCACATCCTGGTCTTCAGCGATTTTTGGATCTAGTACAAAATGACCGTGAA GACGAATGGGATAGTGATGAGATGGACGATGACTTCTAG |