© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6983.t1 |
| Gene name | |
| Location | scaffold_20:148764..150409 |
| Strand | + |
| Gene length (bp) | 1645 |
| Transcript length (bp) | 1185 |
| Coding sequence length (bp) | 1185 |
| Protein length (aa) | 395 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00491 | Arginase | Arginase family | 1.9E-88 | 75 | 375 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0046872 | metal ion binding | Yes |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0043169 | cation binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 20 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 0.16 | 0.00 | 0.46 |
| 5d_25C | Five days - 25 degrees Celsius | 0.55 | 0.00 | 1.22 |
| 7d_25C | Seven days - 25 degrees Celsius | 0.65 | 0.00 | 1.40 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.14 | 0.00 | 0.41 |
| 7d_15C | Seven days - 15 degrees Celsius | 4.07 | 1.05 | 7.10 |
| 7d_30C | Seven days - 30 degrees Celsius | 0.32 | 0.00 | 0.79 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 1.000000 | no |
| 3d_25C | 7d_25C | 1.000000 | no |
| 3d_25C | 7d_15C | 0.052003 | no |
| 3d_25C | 7d_30C | 1.000000 | no |
| 3d_25C | 10d_25C | 1.000000 | no |
| 5d_25C | 7d_25C | 1.000000 | no |
| 5d_25C | 7d_15C | 0.002761 | yes |
| 5d_25C | 7d_30C | 1.000000 | no |
| 5d_25C | 10d_25C | 1.000000 | no |
| 7d_25C | 7d_15C | 0.002297 | yes |
| 7d_25C | 7d_30C | 1.000000 | no |
| 7d_25C | 10d_25C | 1.000000 | no |
| 7d_15C | 7d_30C | 0.007437 | yes |
| 7d_15C | 10d_25C | 0.067447 | no |
| 7d_30C | 10d_25C | 1.000000 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6983.t1 MIASIAGLVVLSALVTAHGNHDQSQSQLAGPHEGLWYNTLPGDGGKQADSVFSGITTFGRLPYFPCLASDAEKYD IAFLGAPFDTGTSYRPGARFGPSGIRQGSRRLNLYGGYNVPLEANPFTSDMRILDCGDVPVTSYDNAWAIKQIEE GHNSILMRKPYLDADKPGLSRAGKTLPRVITLGGDHTITLPLLRSINKAYGPVTVIHFDSHLDSWKPKVFGGSPT QVAGINHGTYFYHAAMEGLLKNDTNIHAGIRTTLSGPSDYENDGYCGFEIVEAREIDVIGTDGIIKKIRDRVGTE NPVYLSIDIDTLDPAFAPATGTPETGGWSTRELRTIIRGLDGLNFIGADIVEVAPAYDTNAELSTMAAADVLYEV LTIMVKKGPLTIGESSHEL* |
| Coding | >Pro_DTO377G3_2|g6983.t1 ATGATTGCCTCCATCGCGGGCTTGGTTGTCCTCTCTGCTCTGGTCACAGCTCATGGTAACCATGACCAGTCTCAG TCCCAGCTTGCTGGTCCACACGAAGGACTCTGGTACAACACACTCCCAGGAGATGGCGGCAAACAGGCCGACTCC GTATTCTCCGGAATCACAACTTTCGGCCGCCTGCCCTATTTCCCATGCCTGGCCAGTGATGCCGAGAAATACGAC ATTGCCTTCTTAGGTGCTCCCTTCGATACCGGAACCTCCTACAGACCCGGTGCCCGGTTCGGACCTAGCGGTATC AGACAAGGTTCTCGCCGCCTCAATCTCTACGGTGGCTACAATGTGCCTTTGGAGGCGAACCCGTTCACTAGCGAT ATGCGAATTTTGGATTGTGGCGATGTTCCCGTTACTTCATACGACAACGCCTGGGCAATCAAGCAGATCGAAGAG GGACACAACAGCATCCTGATGCGCAAGCCTTACCTTGATGCTGATAAACCCGGTCTTTCGCGTGCTGGCAAGACC CTTCCTCGTGTTATTACCCTTGGTGGTGATCACACCATCACACTGCCCTTGCTGCGGAGTATCAACAAGGCCTAT GGGCCTGTCACTGTGATTCACTTTGACAGTCATTTGGACTCGTGGAAGCCGAAGGTCTTCGGTGGCTCTCCTACT CAGGTTGCGGGTATCAATCACGGCACTTACTTCTACCATGCGGCGATGGAAGGATTGTTGAAGAATGATACCAAT ATCCATGCTGGTATTCGCACGACCCTATCTGGTCCTTCCGATTACGAGAACGATGGATACTGCGGCTTTGAGATT GTTGAGGCGAGAGAGATCGATGTTATCGGAACGGACGGTATTATCAAGAAGATTCGCGACCGTGTCGGAACTGAA AACCCCGTTTATCTTTCTATCGATATCGATACTTTGGATCCTGCTTTCGCACCCGCTACCGGCACACCAGAGACT GGCGGTTGGTCCACGCGCGAGCTGCGGACGATCATCCGTGGTCTTGACGGCTTGAACTTCATTGGTGCGGATATC GTTGAGGTTGCGCCGGCTTATGATACCAATGCGGAGTTGTCGACAATGGCTGCCGCTGATGTGCTTTATGAAGTC CTTACTATCATGGTCAAGAAGGGCCCGTTGACTATTGGGGAGTCGTCTCATGAGCTCTGA |
| Transcript | >Pro_DTO377G3_2|g6983.t1 ATGATTGCCTCCATCGCGGGCTTGGTTGTCCTCTCTGCTCTGGTCACAGCTCATGGTAACCATGACCAGTCTCAG TCCCAGCTTGCTGGTCCACACGAAGGACTCTGGTACAACACACTCCCAGGAGATGGCGGCAAACAGGCCGACTCC GTATTCTCCGGAATCACAACTTTCGGCCGCCTGCCCTATTTCCCATGCCTGGCCAGTGATGCCGAGAAATACGAC ATTGCCTTCTTAGGTGCTCCCTTCGATACCGGAACCTCCTACAGACCCGGTGCCCGGTTCGGACCTAGCGGTATC AGACAAGGTTCTCGCCGCCTCAATCTCTACGGTGGCTACAATGTGCCTTTGGAGGCGAACCCGTTCACTAGCGAT ATGCGAATTTTGGATTGTGGCGATGTTCCCGTTACTTCATACGACAACGCCTGGGCAATCAAGCAGATCGAAGAG GGACACAACAGCATCCTGATGCGCAAGCCTTACCTTGATGCTGATAAACCCGGTCTTTCGCGTGCTGGCAAGACC CTTCCTCGTGTTATTACCCTTGGTGGTGATCACACCATCACACTGCCCTTGCTGCGGAGTATCAACAAGGCCTAT GGGCCTGTCACTGTGATTCACTTTGACAGTCATTTGGACTCGTGGAAGCCGAAGGTCTTCGGTGGCTCTCCTACT CAGGTTGCGGGTATCAATCACGGCACTTACTTCTACCATGCGGCGATGGAAGGATTGTTGAAGAATGATACCAAT ATCCATGCTGGTATTCGCACGACCCTATCTGGTCCTTCCGATTACGAGAACGATGGATACTGCGGCTTTGAGATT GTTGAGGCGAGAGAGATCGATGTTATCGGAACGGACGGTATTATCAAGAAGATTCGCGACCGTGTCGGAACTGAA AACCCCGTTTATCTTTCTATCGATATCGATACTTTGGATCCTGCTTTCGCACCCGCTACCGGCACACCAGAGACT GGCGGTTGGTCCACGCGCGAGCTGCGGACGATCATCCGTGGTCTTGACGGCTTGAACTTCATTGGTGCGGATATC GTTGAGGTTGCGCCGGCTTATGATACCAATGCGGAGTTGTCGACAATGGCTGCCGCTGATGTGCTTTATGAAGTC CTTACTATCATGGTCAAGAAGGGCCCGTTGACTATTGGGGAGTCGTCTCATGAGCTCTGA |
| Gene | >Pro_DTO377G3_2|g6983.t1 ATGATTGCCTCCATCGCGGGCTTGGTTGTCCTCTCTGCTCTGGTCACAGCTCATGGTAACCATGACCAGTCTCAG TCCCAGCTTGCTGGTCCACACGAAGGACTCTGGTACAACACACTCCCAGGAGATGGCGGCAAACAGGTGAGCAAC CCCTTTGATAACATTTCAACTCAAACGAAGCCATTCACTAAACGAACAAGGCCGACTCCGTATTCTCCGGAATCA CAACTTTCGGCCGCCTGCCCTATTTCCCATGCCTGGCCAGTGATGCCGAGAAATACGACATTGCCTTCTTAGGTT AGTCATTACCAGCCGATCGAGACTATCTCATACAATGCCCCTACTCACATATCTACCGAACAGGTGCTCCCTTCG ATACCGGAACCTCCTACAGACCCGGTGCCCGGTTCGGACCTAGCGGTATCAGACAAGGTTCTCGCCGCCTCAATC TCTAGTATGTACCAGCCCGGGAGACAGAGATGGTTATGCATGGCACGAACAAGGCTGACGAAATTATCCTTTTAG CGGTGGCTACAATGTGCCTTTGGAGGCGAACCCGTTCACTAGCGATATGCGAATTTTGGATTGTGGCGATGTTCC CGTTACTTCGTATGTTTGCGTTCGACGGGAGATACAAAGACAAGAAACTAATCCGACATAGATACGACAACGCCT GGGCAATCAAGCAGATCGAAGAGGGACACAACAGCATCCTGATGCGCAAGCCTTACCTTGATGCTGATAAACCCG GTCTTTCGCGTGCTGGCAAGACCCTTCCTCGTGTTATTACCCTTGGTGGTGATCACACCATCACACTGCCCTTGC TGCGGAGTATCAACAAGGCCTATGGGCCTGTCACTGTGATTCACTTTGACAGTCATTTGTGAGTACTCTTAGCAT TACAGCATGGACGATTAACTAATTTGATTAGGGACTCGTGGAAGCCGAAGGTCTTCGGTGGCTCTCCTACTCAGG TTGCGGGTATCAATCACGGCACTTACTTCTACCATGCGGCGATGGAAGGATTGTTGAAGAATGATACCAATATCC ATGCTGGTATTCGCACGACCCTATCTGGTCCTTCCGATTACGAGAACGATGGATACTGCGGCTTTGAGATTGTTG AGGCGAGAGAGATCGATGTTATCGGTATGTTATCTTGTCGCTTCCAAGGTTGGCTCTGTACTAATGATTGTCGAC TTTAGGAACGGACGGTATTATCAAGAAGATTCGCGACCGTGTCGGAACTGAAAACCCCGTTTATCTTTCTATCGA TATCGATACTTTGGATCCTGCTTGTAAGTCTTGTCGGAGATGTCTATTGTGGGTTGTCGGTCGCTAATAATACAA TCCAGTCGCACCCGCTACCGGCACACCAGAGACTGGCGGTTGGTCCACGCGCGAGCTGCGGACGATCATCCGTGG TCTTGACGGCTTGAACTTCATTGGTGCGGATATCGTTGAGGTTGCGCCGGCTTATGATACCAATGCGGAGTTGTC GACAATGTAGGTTGCTTTGAGTGGTGGAAGATATAACAAATACTGACTTTTCTACAGGGCTGCCGCTGATGTGCT TTATGAAGTCCTTACTATCATGGTCAAGAAGGGCCCGTTGACTATTGGGGAGTCGTCTCATGAGCTCTGA |