Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g6983.t1
Gene name
Locationscaffold_20:148764..150409
Strand+
Gene length (bp)1645
Transcript length (bp)1185
Coding sequence length (bp)1185
Protein length (aa) 395

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00491 Arginase Arginase family 1.9E-88 75 375

GO

GO Term Description Terminal node
GO:0046872 metal ion binding Yes
GO:0005488 binding No
GO:0043167 ion binding No
GO:0043169 cation binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 20 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 0.16 0.00 0.46
5d_25C Five days - 25 degrees Celsius 0.55 0.00 1.22
7d_25C Seven days - 25 degrees Celsius 0.65 0.00 1.40
10d_25C Ten days - 25 degrees Celsius 0.14 0.00 0.41
7d_15C Seven days - 15 degrees Celsius 4.07 1.05 7.10
7d_30C Seven days - 30 degrees Celsius 0.32 0.00 0.79

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 1.000000 no
3d_25C 7d_25C 1.000000 no
3d_25C 7d_15C 0.052003 no
3d_25C 7d_30C 1.000000 no
3d_25C 10d_25C 1.000000 no
5d_25C 7d_25C 1.000000 no
5d_25C 7d_15C 0.002761 yes
5d_25C 7d_30C 1.000000 no
5d_25C 10d_25C 1.000000 no
7d_25C 7d_15C 0.002297 yes
7d_25C 7d_30C 1.000000 no
7d_25C 10d_25C 1.000000 no
7d_15C 7d_30C 0.007437 yes
7d_15C 10d_25C 0.067447 no
7d_30C 10d_25C 1.000000 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g6983.t1
MIASIAGLVVLSALVTAHGNHDQSQSQLAGPHEGLWYNTLPGDGGKQADSVFSGITTFGRLPYFPCLASDAEKYD
IAFLGAPFDTGTSYRPGARFGPSGIRQGSRRLNLYGGYNVPLEANPFTSDMRILDCGDVPVTSYDNAWAIKQIEE
GHNSILMRKPYLDADKPGLSRAGKTLPRVITLGGDHTITLPLLRSINKAYGPVTVIHFDSHLDSWKPKVFGGSPT
QVAGINHGTYFYHAAMEGLLKNDTNIHAGIRTTLSGPSDYENDGYCGFEIVEAREIDVIGTDGIIKKIRDRVGTE
NPVYLSIDIDTLDPAFAPATGTPETGGWSTRELRTIIRGLDGLNFIGADIVEVAPAYDTNAELSTMAAADVLYEV
LTIMVKKGPLTIGESSHEL*
Coding >Pro_DTO377G3_2|g6983.t1
ATGATTGCCTCCATCGCGGGCTTGGTTGTCCTCTCTGCTCTGGTCACAGCTCATGGTAACCATGACCAGTCTCAG
TCCCAGCTTGCTGGTCCACACGAAGGACTCTGGTACAACACACTCCCAGGAGATGGCGGCAAACAGGCCGACTCC
GTATTCTCCGGAATCACAACTTTCGGCCGCCTGCCCTATTTCCCATGCCTGGCCAGTGATGCCGAGAAATACGAC
ATTGCCTTCTTAGGTGCTCCCTTCGATACCGGAACCTCCTACAGACCCGGTGCCCGGTTCGGACCTAGCGGTATC
AGACAAGGTTCTCGCCGCCTCAATCTCTACGGTGGCTACAATGTGCCTTTGGAGGCGAACCCGTTCACTAGCGAT
ATGCGAATTTTGGATTGTGGCGATGTTCCCGTTACTTCATACGACAACGCCTGGGCAATCAAGCAGATCGAAGAG
GGACACAACAGCATCCTGATGCGCAAGCCTTACCTTGATGCTGATAAACCCGGTCTTTCGCGTGCTGGCAAGACC
CTTCCTCGTGTTATTACCCTTGGTGGTGATCACACCATCACACTGCCCTTGCTGCGGAGTATCAACAAGGCCTAT
GGGCCTGTCACTGTGATTCACTTTGACAGTCATTTGGACTCGTGGAAGCCGAAGGTCTTCGGTGGCTCTCCTACT
CAGGTTGCGGGTATCAATCACGGCACTTACTTCTACCATGCGGCGATGGAAGGATTGTTGAAGAATGATACCAAT
ATCCATGCTGGTATTCGCACGACCCTATCTGGTCCTTCCGATTACGAGAACGATGGATACTGCGGCTTTGAGATT
GTTGAGGCGAGAGAGATCGATGTTATCGGAACGGACGGTATTATCAAGAAGATTCGCGACCGTGTCGGAACTGAA
AACCCCGTTTATCTTTCTATCGATATCGATACTTTGGATCCTGCTTTCGCACCCGCTACCGGCACACCAGAGACT
GGCGGTTGGTCCACGCGCGAGCTGCGGACGATCATCCGTGGTCTTGACGGCTTGAACTTCATTGGTGCGGATATC
GTTGAGGTTGCGCCGGCTTATGATACCAATGCGGAGTTGTCGACAATGGCTGCCGCTGATGTGCTTTATGAAGTC
CTTACTATCATGGTCAAGAAGGGCCCGTTGACTATTGGGGAGTCGTCTCATGAGCTCTGA
Transcript >Pro_DTO377G3_2|g6983.t1
ATGATTGCCTCCATCGCGGGCTTGGTTGTCCTCTCTGCTCTGGTCACAGCTCATGGTAACCATGACCAGTCTCAG
TCCCAGCTTGCTGGTCCACACGAAGGACTCTGGTACAACACACTCCCAGGAGATGGCGGCAAACAGGCCGACTCC
GTATTCTCCGGAATCACAACTTTCGGCCGCCTGCCCTATTTCCCATGCCTGGCCAGTGATGCCGAGAAATACGAC
ATTGCCTTCTTAGGTGCTCCCTTCGATACCGGAACCTCCTACAGACCCGGTGCCCGGTTCGGACCTAGCGGTATC
AGACAAGGTTCTCGCCGCCTCAATCTCTACGGTGGCTACAATGTGCCTTTGGAGGCGAACCCGTTCACTAGCGAT
ATGCGAATTTTGGATTGTGGCGATGTTCCCGTTACTTCATACGACAACGCCTGGGCAATCAAGCAGATCGAAGAG
GGACACAACAGCATCCTGATGCGCAAGCCTTACCTTGATGCTGATAAACCCGGTCTTTCGCGTGCTGGCAAGACC
CTTCCTCGTGTTATTACCCTTGGTGGTGATCACACCATCACACTGCCCTTGCTGCGGAGTATCAACAAGGCCTAT
GGGCCTGTCACTGTGATTCACTTTGACAGTCATTTGGACTCGTGGAAGCCGAAGGTCTTCGGTGGCTCTCCTACT
CAGGTTGCGGGTATCAATCACGGCACTTACTTCTACCATGCGGCGATGGAAGGATTGTTGAAGAATGATACCAAT
ATCCATGCTGGTATTCGCACGACCCTATCTGGTCCTTCCGATTACGAGAACGATGGATACTGCGGCTTTGAGATT
GTTGAGGCGAGAGAGATCGATGTTATCGGAACGGACGGTATTATCAAGAAGATTCGCGACCGTGTCGGAACTGAA
AACCCCGTTTATCTTTCTATCGATATCGATACTTTGGATCCTGCTTTCGCACCCGCTACCGGCACACCAGAGACT
GGCGGTTGGTCCACGCGCGAGCTGCGGACGATCATCCGTGGTCTTGACGGCTTGAACTTCATTGGTGCGGATATC
GTTGAGGTTGCGCCGGCTTATGATACCAATGCGGAGTTGTCGACAATGGCTGCCGCTGATGTGCTTTATGAAGTC
CTTACTATCATGGTCAAGAAGGGCCCGTTGACTATTGGGGAGTCGTCTCATGAGCTCTGA
Gene >Pro_DTO377G3_2|g6983.t1
ATGATTGCCTCCATCGCGGGCTTGGTTGTCCTCTCTGCTCTGGTCACAGCTCATGGTAACCATGACCAGTCTCAG
TCCCAGCTTGCTGGTCCACACGAAGGACTCTGGTACAACACACTCCCAGGAGATGGCGGCAAACAGGTGAGCAAC
CCCTTTGATAACATTTCAACTCAAACGAAGCCATTCACTAAACGAACAAGGCCGACTCCGTATTCTCCGGAATCA
CAACTTTCGGCCGCCTGCCCTATTTCCCATGCCTGGCCAGTGATGCCGAGAAATACGACATTGCCTTCTTAGGTT
AGTCATTACCAGCCGATCGAGACTATCTCATACAATGCCCCTACTCACATATCTACCGAACAGGTGCTCCCTTCG
ATACCGGAACCTCCTACAGACCCGGTGCCCGGTTCGGACCTAGCGGTATCAGACAAGGTTCTCGCCGCCTCAATC
TCTAGTATGTACCAGCCCGGGAGACAGAGATGGTTATGCATGGCACGAACAAGGCTGACGAAATTATCCTTTTAG
CGGTGGCTACAATGTGCCTTTGGAGGCGAACCCGTTCACTAGCGATATGCGAATTTTGGATTGTGGCGATGTTCC
CGTTACTTCGTATGTTTGCGTTCGACGGGAGATACAAAGACAAGAAACTAATCCGACATAGATACGACAACGCCT
GGGCAATCAAGCAGATCGAAGAGGGACACAACAGCATCCTGATGCGCAAGCCTTACCTTGATGCTGATAAACCCG
GTCTTTCGCGTGCTGGCAAGACCCTTCCTCGTGTTATTACCCTTGGTGGTGATCACACCATCACACTGCCCTTGC
TGCGGAGTATCAACAAGGCCTATGGGCCTGTCACTGTGATTCACTTTGACAGTCATTTGTGAGTACTCTTAGCAT
TACAGCATGGACGATTAACTAATTTGATTAGGGACTCGTGGAAGCCGAAGGTCTTCGGTGGCTCTCCTACTCAGG
TTGCGGGTATCAATCACGGCACTTACTTCTACCATGCGGCGATGGAAGGATTGTTGAAGAATGATACCAATATCC
ATGCTGGTATTCGCACGACCCTATCTGGTCCTTCCGATTACGAGAACGATGGATACTGCGGCTTTGAGATTGTTG
AGGCGAGAGAGATCGATGTTATCGGTATGTTATCTTGTCGCTTCCAAGGTTGGCTCTGTACTAATGATTGTCGAC
TTTAGGAACGGACGGTATTATCAAGAAGATTCGCGACCGTGTCGGAACTGAAAACCCCGTTTATCTTTCTATCGA
TATCGATACTTTGGATCCTGCTTGTAAGTCTTGTCGGAGATGTCTATTGTGGGTTGTCGGTCGCTAATAATACAA
TCCAGTCGCACCCGCTACCGGCACACCAGAGACTGGCGGTTGGTCCACGCGCGAGCTGCGGACGATCATCCGTGG
TCTTGACGGCTTGAACTTCATTGGTGCGGATATCGTTGAGGTTGCGCCGGCTTATGATACCAATGCGGAGTTGTC
GACAATGTAGGTTGCTTTGAGTGGTGGAAGATATAACAAATACTGACTTTTCTACAGGGCTGCCGCTGATGTGCT
TTATGAAGTCCTTACTATCATGGTCAAGAAGGGCCCGTTGACTATTGGGGAGTCGTCTCATGAGCTCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail