© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6982.t1 |
| Gene name | |
| Location | scaffold_20:146409..147954 |
| Strand | + |
| Gene length (bp) | 1545 |
| Transcript length (bp) | 1491 |
| Coding sequence length (bp) | 1491 |
| Protein length (aa) | 497 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01554 | MatE | MatE | 1.1E-29 | 58 | 219 |
| PF01554 | MatE | MatE | 5.3E-28 | 282 | 434 |
| PF14667 | Polysacc_synt_C | Polysaccharide biosynthesis C-terminal domain | 8.1E-07 | 173 | 297 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0015297 | antiporter activity | Yes |
| GO:0042910 | xenobiotic transmembrane transporter activity | Yes |
| GO:0015291 | secondary active transmembrane transporter activity | No |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0022804 | active transmembrane transporter activity | No |
| GO:0005575 | cellular_component | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 63 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 85 | 107 | 22 |
| 2 | 127 | 149 | 22 |
| 3 | 169 | 188 | 19 |
| 4 | 201 | 223 | 22 |
| 5 | 233 | 255 | 22 |
| 6 | 276 | 298 | 22 |
| 7 | 349 | 371 | 22 |
| 8 | 424 | 446 | 22 |
| 9 | 451 | 470 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6982.t1 MPNPSSNGGSSHQPTEYTSLLAKPIDNGPPLHDSEDESPFSRALILAEFWLLLKDSTPVILAYTLQNSLQTISVL IIGRSSPENLAASAFSQMFAMVTGWMIALGGTTAMDTLASSSFTGSSNKHDLGILLQRGFLVLGLFYIPVAILWA CSEPVFLFLGQSPQLSHDSARFLTCLIPGGLGYIYFEVMKKYLQAQGIMRAGTYVLLITSPLNAGLNYLFCYTFK IGLLGAPLATGICYWLSFALLVLYARFINGAECWGGWSREAFQNLRTFARLALLGIVHVGTEWWAFEIVALAAGH LGTVSLAAQSVIMTADQVLNTIPFGIGVATSGRVGNLLGKRDDTGAARAAHTSAVLSMVCGGVVLAVLIGTRDHF AKIFNDDSDVVRLTAEVMPYVALFQIADGLNGSCGGSLRGMGRQHVGALVNLVSYYCGALPLGIWLAFHGWGLKG LWVGQCIALYLVGVFEWVIVARSRWDVEVQKAFQRMDVHETLEDAI* |
| Coding | >Pro_DTO377G3_2|g6982.t1 ATGCCCAACCCCTCCAGCAATGGAGGCTCAAGTCACCAACCAACCGAGTATACTTCCCTCCTCGCCAAGCCCATC GACAATGGACCACCATTGCACGACTCCGAAGATGAAAGTCCATTCTCGCGAGCCCTCATCCTCGCCGAGTTCTGG CTCTTGCTGAAAGACTCAACTCCCGTAATCTTAGCCTACACTCTGCAAAACAGCCTTCAAACAATATCGGTGTTG ATCATCGGTCGCTCATCACCGGAGAACCTCGCCGCGAGTGCATTCTCGCAGATGTTCGCCATGGTTACGGGATGG ATGATTGCTTTAGGAGGTACCACGGCTATGGACACACTCGCCTCCTCCTCCTTCACGGGAAGCTCCAACAAACAT GACTTGGGAATTCTGCTTCAGCGGGGCTTCTTGGTCCTGGGTCTTTTTTATATACCCGTCGCTATCTTGTGGGCT TGTTCAGAGCCTGTCTTTTTGTTCCTTGGGCAGAGTCCTCAACTCTCACACGACAGCGCGAGGTTCTTAACTTGT TTGATTCCTGGGGGTTTGGGATATATTTATTTCGAGGTTATGAAGAAGTATCTGCAAGCTCAAGGAATCATGCGA GCTGGAACATACGTGCTGCTAATTACCTCACCATTAAACGCCGGTCTCAACTACCTATTCTGCTACACATTCAAG ATCGGCCTCTTAGGCGCACCTCTCGCAACGGGAATCTGCTACTGGCTCTCATTTGCATTGCTAGTTCTCTACGCA CGCTTCATCAACGGCGCAGAGTGTTGGGGCGGATGGTCGCGCGAGGCATTCCAAAACCTTCGCACCTTTGCACGA CTCGCTCTTCTAGGCATTGTGCACGTTGGAACAGAATGGTGGGCATTTGAGATCGTCGCTTTAGCAGCTGGCCAC CTGGGTACTGTCTCGCTCGCTGCTCAGAGTGTCATTATGACAGCCGATCAAGTTCTCAATACGATTCCTTTCGGA ATTGGAGTCGCGACGTCCGGCCGCGTTGGTAATCTACTAGGAAAACGAGATGATACCGGTGCGGCGCGCGCGGCG CATACCTCTGCCGTGCTGAGTATGGTTTGTGGTGGCGTTGTGCTAGCTGTTCTTATCGGGACGCGGGATCACTTT GCCAAGATCTTCAATGATGATTCGGATGTTGTACGTCTTACGGCTGAAGTCATGCCGTATGTGGCGCTTTTCCAG ATTGCCGATGGGCTTAATGGGAGTTGTGGGGGGAGTCTGAGAGGAATGGGACGGCAGCATGTGGGTGCTCTGGTT AATTTGGTGAGTTATTACTGCGGTGCATTGCCGTTAGGTATCTGGCTTGCGTTTCATGGCTGGGGACTTAAGGGT CTGTGGGTTGGGCAGTGTATTGCTTTGTATTTGGTTGGAGTGTTTGAGTGGGTTATTGTTGCGCGCAGTCGGTGG GATGTGGAGGTGCAGAAGGCTTTCCAGCGCATGGATGTACATGAGACTCTGGAGGATGCGATTTGA |
| Transcript | >Pro_DTO377G3_2|g6982.t1 ATGCCCAACCCCTCCAGCAATGGAGGCTCAAGTCACCAACCAACCGAGTATACTTCCCTCCTCGCCAAGCCCATC GACAATGGACCACCATTGCACGACTCCGAAGATGAAAGTCCATTCTCGCGAGCCCTCATCCTCGCCGAGTTCTGG CTCTTGCTGAAAGACTCAACTCCCGTAATCTTAGCCTACACTCTGCAAAACAGCCTTCAAACAATATCGGTGTTG ATCATCGGTCGCTCATCACCGGAGAACCTCGCCGCGAGTGCATTCTCGCAGATGTTCGCCATGGTTACGGGATGG ATGATTGCTTTAGGAGGTACCACGGCTATGGACACACTCGCCTCCTCCTCCTTCACGGGAAGCTCCAACAAACAT GACTTGGGAATTCTGCTTCAGCGGGGCTTCTTGGTCCTGGGTCTTTTTTATATACCCGTCGCTATCTTGTGGGCT TGTTCAGAGCCTGTCTTTTTGTTCCTTGGGCAGAGTCCTCAACTCTCACACGACAGCGCGAGGTTCTTAACTTGT TTGATTCCTGGGGGTTTGGGATATATTTATTTCGAGGTTATGAAGAAGTATCTGCAAGCTCAAGGAATCATGCGA GCTGGAACATACGTGCTGCTAATTACCTCACCATTAAACGCCGGTCTCAACTACCTATTCTGCTACACATTCAAG ATCGGCCTCTTAGGCGCACCTCTCGCAACGGGAATCTGCTACTGGCTCTCATTTGCATTGCTAGTTCTCTACGCA CGCTTCATCAACGGCGCAGAGTGTTGGGGCGGATGGTCGCGCGAGGCATTCCAAAACCTTCGCACCTTTGCACGA CTCGCTCTTCTAGGCATTGTGCACGTTGGAACAGAATGGTGGGCATTTGAGATCGTCGCTTTAGCAGCTGGCCAC CTGGGTACTGTCTCGCTCGCTGCTCAGAGTGTCATTATGACAGCCGATCAAGTTCTCAATACGATTCCTTTCGGA ATTGGAGTCGCGACGTCCGGCCGCGTTGGTAATCTACTAGGAAAACGAGATGATACCGGTGCGGCGCGCGCGGCG CATACCTCTGCCGTGCTGAGTATGGTTTGTGGTGGCGTTGTGCTAGCTGTTCTTATCGGGACGCGGGATCACTTT GCCAAGATCTTCAATGATGATTCGGATGTTGTACGTCTTACGGCTGAAGTCATGCCGTATGTGGCGCTTTTCCAG ATTGCCGATGGGCTTAATGGGAGTTGTGGGGGGAGTCTGAGAGGAATGGGACGGCAGCATGTGGGTGCTCTGGTT AATTTGGTGAGTTATTACTGCGGTGCATTGCCGTTAGGTATCTGGCTTGCGTTTCATGGCTGGGGACTTAAGGGT CTGTGGGTTGGGCAGTGTATTGCTTTGTATTTGGTTGGAGTGTTTGAGTGGGTTATTGTTGCGCGCAGTCGGTGG GATGTGGAGGTGCAGAAGGCTTTCCAGCGCATGGATGTACATGAGACTCTGGAGGATGCGATTTGA |
| Gene | >Pro_DTO377G3_2|g6982.t1 ATGCCCAACCCCTCCAGCAATGGAGGCTCAAGTCACCAACCAACCGAGTATACTTCCCTCCTCGCCAAGCCCATC GACAATGGACCACCATTGCACGACTCCGAAGATGAAAGTCCATTCTCGCGAGCCCTCATCCTCGCCGAGTTCTGG CTCTTGCTGAAAGACTCAACTCCCGTAATCTTAGCCTACACTCTGCAAAACAGCCTTCAAACAATATCGGTGTTG ATCATCGGTCGCTCATCACCGGAGAACCTCGCCGCGAGTGCATTCTCGCAGATGTTCGCCATGGTTACGGGATGG ATGATTGCTTTAGGAGGTACCACGGCTATGGACACACTCGCCTCCTCCTCCTTCACGGGAAGCTCCAACAAACAT GACTTGGGAATTCTGCTTCAGCGGGGCTTCTTGGTCCTGGGTCTTTTTTATATACCCGTCGCTATCTTGTGGGCT TGTTCAGAGCCTGTCTTTTTGTTCCTTGGGCAGAGTCCTCAACTCTCACACGACAGCGCGAGGTTCTTAACTTGT TTGATTCCTGGGGGTTTGGGATATATTTATTTCGAGGTTATGAAGAAGTATCTGCAAGCTCAAGGTATGTTTGCA CGAGATTGATCCGGGTATGGATACTAACATGACCATCATATAGGAATCATGCGAGCTGGAACATACGTGCTGCTA ATTACCTCACCATTAAACGCCGGTCTCAACTACCTATTCTGCTACACATTCAAGATCGGCCTCTTAGGCGCACCT CTCGCAACGGGAATCTGCTACTGGCTCTCATTTGCATTGCTAGTTCTCTACGCACGCTTCATCAACGGCGCAGAG TGTTGGGGCGGATGGTCGCGCGAGGCATTCCAAAACCTTCGCACCTTTGCACGACTCGCTCTTCTAGGCATTGTG CACGTTGGAACAGAATGGTGGGCATTTGAGATCGTCGCTTTAGCAGCTGGCCACCTGGGTACTGTCTCGCTCGCT GCTCAGAGTGTCATTATGACAGCCGATCAAGTTCTCAATACGATTCCTTTCGGAATTGGAGTCGCGACGTCCGGC CGCGTTGGTAATCTACTAGGAAAACGAGATGATACCGGTGCGGCGCGCGCGGCGCATACCTCTGCCGTGCTGAGT ATGGTTTGTGGTGGCGTTGTGCTAGCTGTTCTTATCGGGACGCGGGATCACTTTGCCAAGATCTTCAATGATGAT TCGGATGTTGTACGTCTTACGGCTGAAGTCATGCCGTATGTGGCGCTTTTCCAGATTGCCGATGGGCTTAATGGG AGTTGTGGGGGGAGTCTGAGAGGAATGGGACGGCAGCATGTGGGTGCTCTGGTTAATTTGGTGAGTTATTACTGC GGTGCATTGCCGTTAGGTATCTGGCTTGCGTTTCATGGCTGGGGACTTAAGGGTCTGTGGGTTGGGCAGTGTATT GCTTTGTATTTGGTTGGAGTGTTTGAGTGGGTTATTGTTGCGCGCAGTCGGTGGGATGTGGAGGTGCAGAAGGCT TTCCAGCGCATGGATGTACATGAGACTCTGGAGGATGCGATTTGA |