© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6979.t1 |
| Gene name | |
| Location | scaffold_20:138397..139447 |
| Strand | - |
| Gene length (bp) | 1050 |
| Transcript length (bp) | 1050 |
| Coding sequence length (bp) | 1050 |
| Protein length (aa) | 350 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00106 | adh_short | short chain dehydrogenase | 3.3E-09 | 34 | 163 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 62 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 66.74 | 39.24 | 94.24 |
| 5d_25C | Five days - 25 degrees Celsius | 64.10 | 37.37 | 90.83 |
| 7d_25C | Seven days - 25 degrees Celsius | 77.72 | 46.30 | 109.15 |
| 10d_25C | Ten days - 25 degrees Celsius | 95.11 | 57.55 | 132.67 |
| 7d_15C | Seven days - 15 degrees Celsius | 47.19 | 26.05 | 68.32 |
| 7d_30C | Seven days - 30 degrees Celsius | 57.44 | 33.05 | 81.82 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.909414 | no |
| 3d_25C | 7d_25C | 0.579251 | no |
| 3d_25C | 7d_15C | 0.155216 | no |
| 3d_25C | 7d_30C | 0.605478 | no |
| 3d_25C | 10d_25C | 0.109486 | no |
| 5d_25C | 7d_25C | 0.468423 | no |
| 5d_25C | 7d_15C | 0.224791 | no |
| 5d_25C | 7d_30C | 0.728935 | no |
| 5d_25C | 10d_25C | 0.072335 | no |
| 7d_25C | 7d_15C | 0.030233 | yes |
| 7d_25C | 7d_30C | 0.211382 | no |
| 7d_25C | 10d_25C | 0.421563 | no |
| 7d_15C | 7d_30C | 0.494687 | no |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.018295 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6979.t1 MPFYNSYPGFLYRQFLVCPSKAPSTTSLRGKAGIVTGSNTGLGYQASAQFLGLGLSHLILAVRSISKGEAARNSL LASLPASVKPPVVEVWELDLGSYASTIAFVERLKKSDIQVDFALLNAGVANFNFTINQPTSHESSIQINWLSTAL LTLLLLPVLDQQAANNLNRARPVISIVGSETAAWAKFPEAQVSIKQGLPLIQVLDDKANFDMGDRYYTSKLLYQL FFLELFRNRSSAKRSTGAILNLVNPGFCYGSELHRTAEGAFGKVLAGMKRVIGRSVSMGARTLVHSSVLAGDASN GKYLSDNKQAPFAGYGDSDSGRIIQAQVWKETISELAPVVDIDKVLSQI* |
| Coding | >Pro_DTO377G3_2|g6979.t1 ATGCCTTTCTATAACTCTTACCCAGGCTTCCTCTATCGCCAGTTCTTGGTCTGCCCTTCCAAAGCCCCATCCACC ACCTCCCTTCGCGGTAAGGCAGGTATCGTGACAGGCTCTAATACTGGCCTGGGCTATCAAGCTTCCGCCCAGTTT CTCGGCCTTGGACTCTCCCATTTGATTTTGGCCGTCCGTAGCATCTCCAAAGGAGAAGCTGCCCGAAACTCCCTT CTCGCCTCGCTTCCCGCCTCGGTCAAGCCCCCCGTGGTCGAGGTCTGGGAGCTGGACTTAGGCAGCTATGCCAGT ACTATCGCCTTTGTCGAGCGCCTCAAGAAGTCCGACATTCAGGTCGACTTTGCTCTTCTCAACGCCGGTGTTGCC AACTTCAACTTCACCATCAACCAACCCACCTCTCACGAGTCAAGCATCCAAATCAATTGGCTAAGCACGGCTCTC CTGACGCTGCTATTATTACCCGTGCTTGATCAACAGGCTGCCAACAACCTCAACCGCGCTCGCCCGGTGATTTCC ATCGTCGGCAGTGAGACAGCCGCCTGGGCTAAGTTCCCCGAGGCTCAGGTATCTATCAAGCAGGGACTTCCCCTT ATCCAAGTCTTGGATGACAAGGCCAATTTCGACATGGGAGATCGTTACTATACCTCCAAGTTGCTCTACCAGCTC TTCTTCCTTGAGCTGTTCCGCAACCGATCCAGCGCCAAGCGCTCCACGGGCGCCATTCTGAACTTGGTCAACCCT GGTTTCTGTTATGGCTCTGAGTTGCACCGCACGGCTGAGGGTGCCTTTGGGAAAGTTCTCGCAGGTATGAAGAGA GTTATCGGTCGCTCTGTCTCCATGGGCGCTCGTACCCTGGTTCACTCATCGGTGTTGGCTGGCGATGCCTCTAAT GGCAAGTACCTGAGTGACAACAAGCAGGCTCCATTTGCAGGATATGGAGACAGTGATTCTGGCAGAATCATCCAG GCACAGGTGTGGAAGGAGACAATCTCCGAGTTGGCCCCTGTGGTTGACATTGACAAGGTGTTGTCGCAGATTTAA |
| Transcript | >Pro_DTO377G3_2|g6979.t1 ATGCCTTTCTATAACTCTTACCCAGGCTTCCTCTATCGCCAGTTCTTGGTCTGCCCTTCCAAAGCCCCATCCACC ACCTCCCTTCGCGGTAAGGCAGGTATCGTGACAGGCTCTAATACTGGCCTGGGCTATCAAGCTTCCGCCCAGTTT CTCGGCCTTGGACTCTCCCATTTGATTTTGGCCGTCCGTAGCATCTCCAAAGGAGAAGCTGCCCGAAACTCCCTT CTCGCCTCGCTTCCCGCCTCGGTCAAGCCCCCCGTGGTCGAGGTCTGGGAGCTGGACTTAGGCAGCTATGCCAGT ACTATCGCCTTTGTCGAGCGCCTCAAGAAGTCCGACATTCAGGTCGACTTTGCTCTTCTCAACGCCGGTGTTGCC AACTTCAACTTCACCATCAACCAACCCACCTCTCACGAGTCAAGCATCCAAATCAATTGGCTAAGCACGGCTCTC CTGACGCTGCTATTATTACCCGTGCTTGATCAACAGGCTGCCAACAACCTCAACCGCGCTCGCCCGGTGATTTCC ATCGTCGGCAGTGAGACAGCCGCCTGGGCTAAGTTCCCCGAGGCTCAGGTATCTATCAAGCAGGGACTTCCCCTT ATCCAAGTCTTGGATGACAAGGCCAATTTCGACATGGGAGATCGTTACTATACCTCCAAGTTGCTCTACCAGCTC TTCTTCCTTGAGCTGTTCCGCAACCGATCCAGCGCCAAGCGCTCCACGGGCGCCATTCTGAACTTGGTCAACCCT GGTTTCTGTTATGGCTCTGAGTTGCACCGCACGGCTGAGGGTGCCTTTGGGAAAGTTCTCGCAGGTATGAAGAGA GTTATCGGTCGCTCTGTCTCCATGGGCGCTCGTACCCTGGTTCACTCATCGGTGTTGGCTGGCGATGCCTCTAAT GGCAAGTACCTGAGTGACAACAAGCAGGCTCCATTTGCAGGATATGGAGACAGTGATTCTGGCAGAATCATCCAG GCACAGGTGTGGAAGGAGACAATCTCCGAGTTGGCCCCTGTGGTTGACATTGACAAGGTGTTGTCGCAGATTTAA |
| Gene | >Pro_DTO377G3_2|g6979.t1 ATGCCTTTCTATAACTCTTACCCAGGCTTCCTCTATCGCCAGTTCTTGGTCTGCCCTTCCAAAGCCCCATCCACC ACCTCCCTTCGCGGTAAGGCAGGTATCGTGACAGGCTCTAATACTGGCCTGGGCTATCAAGCTTCCGCCCAGTTT CTCGGCCTTGGACTCTCCCATTTGATTTTGGCCGTCCGTAGCATCTCCAAAGGAGAAGCTGCCCGAAACTCCCTT CTCGCCTCGCTTCCCGCCTCGGTCAAGCCCCCCGTGGTCGAGGTCTGGGAGCTGGACTTAGGCAGCTATGCCAGT ACTATCGCCTTTGTCGAGCGCCTCAAGAAGTCCGACATTCAGGTCGACTTTGCTCTTCTCAACGCCGGTGTTGCC AACTTCAACTTCACCATCAACCAACCCACCTCTCACGAGTCAAGCATCCAAATCAATTGGCTAAGCACGGCTCTC CTGACGCTGCTATTATTACCCGTGCTTGATCAACAGGCTGCCAACAACCTCAACCGCGCTCGCCCGGTGATTTCC ATCGTCGGCAGTGAGACAGCCGCCTGGGCTAAGTTCCCCGAGGCTCAGGTATCTATCAAGCAGGGACTTCCCCTT ATCCAAGTCTTGGATGACAAGGCCAATTTCGACATGGGAGATCGTTACTATACCTCCAAGTTGCTCTACCAGCTC TTCTTCCTTGAGCTGTTCCGCAACCGATCCAGCGCCAAGCGCTCCACGGGCGCCATTCTGAACTTGGTCAACCCT GGTTTCTGTTATGGCTCTGAGTTGCACCGCACGGCTGAGGGTGCCTTTGGGAAAGTTCTCGCAGGTATGAAGAGA GTTATCGGTCGCTCTGTCTCCATGGGCGCTCGTACCCTGGTTCACTCATCGGTGTTGGCTGGCGATGCCTCTAAT GGCAAGTACCTGAGTGACAACAAGCAGGCTCCATTTGCAGGATATGGAGACAGTGATTCTGGCAGAATCATCCAG GCACAGGTGTGGAAGGAGACAATCTCCGAGTTGGCCCCTGTGGTTGACATTGACAAGGTGTTGTCGCAGATTTAA |