Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g696.t1
Gene name
Locationscaffold_01:1812241..1812949
Strand-
Gene length (bp)708
Transcript length (bp)627
Coding sequence length (bp)627
Protein length (aa) 209

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00160 Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 1.9E-36 3 180

GO

GO Term Description Terminal node
GO:0000413 protein peptidyl-prolyl isomerization Yes
GO:0003755 peptidyl-prolyl cis-trans isomerase activity Yes
GO:0003674 molecular_function No
GO:0043170 macromolecule metabolic process No
GO:0140096 catalytic activity, acting on a protein No
GO:0019538 protein metabolic process No
GO:0008150 biological_process No
GO:0036211 protein modification process No
GO:0071704 organic substance metabolic process No
GO:0008152 metabolic process No
GO:0018208 peptidyl-proline modification No
GO:0003824 catalytic activity No
GO:0043412 macromolecule modification No
GO:0006807 nitrogen compound metabolic process No
GO:0016853 isomerase activity No
GO:0018193 peptidyl-amino acid modification No
GO:0016859 cis-trans isomerase activity No
GO:1901564 organonitrogen compound metabolic process No
GO:0044238 primary metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 16 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 32.20 13.56 50.85
5d_25C Five days - 25 degrees Celsius 34.64 15.04 54.24
7d_25C Seven days - 25 degrees Celsius 40.46 18.37 62.54
10d_25C Ten days - 25 degrees Celsius 42.32 19.49 65.15
7d_15C Seven days - 15 degrees Celsius 24.32 9.46 39.18
7d_30C Seven days - 30 degrees Celsius 40.55 18.44 62.66

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.875512 no
3d_25C 7d_25C 0.545748 no
3d_25C 7d_15C 0.468894 no
3d_25C 7d_30C 0.539536 no
3d_25C 10d_25C 0.447943 no
5d_25C 7d_25C 0.694175 no
5d_25C 7d_15C 0.314384 no
5d_25C 7d_30C 0.688649 no
5d_25C 10d_25C 0.590208 no
7d_25C 7d_15C 0.112289 no
7d_25C 7d_30C 0.996866 no
7d_25C 10d_25C 0.923546 no
7d_15C 7d_30C 0.114502 no
7d_15C 10d_25C 0.082612 no
7d_30C 10d_25C 0.926712 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g696.t1
MSVTLHTTQGDLKVELFCEAVPQTAENFLALCACGAYNNTPFHRLIPGFMVQGGDISLGPAAHQTSMKPMLEFEI
PKGGTSIYHPAAMNQEIHLPSLRHNARGILSMASRPVKDRTAPGSQGATGATINGSQFFITFVPAPHLDGASTVF
GKVLNLTPQDEGGDVLTNIEKANVKVDKKGKVSQPKEGDDFEAFKINNVTIHANPFAK*
Coding >Pro_DTO377G3_2|g696.t1
ATGTCTGTTACATTACATACCACCCAAGGCGACCTCAAGGTCGAGCTTTTCTGCGAAGCAGTACCCCAAACCGCA
GAGAACTTTCTCGCCCTCTGCGCATGCGGCGCATACAACAACACCCCATTTCACCGCCTCATCCCGGGATTCATG
GTCCAGGGCGGAGACATCTCTCTCGGCCCCGCCGCGCATCAAACAAGCATGAAACCAATGCTCGAGTTCGAGATC
CCAAAAGGCGGCACATCGATATACCACCCGGCAGCAATGAACCAAGAAATCCACCTCCCATCATTGCGACACAAT
GCGCGAGGCATTCTGTCTATGGCATCTCGTCCGGTGAAGGACAGGACGGCGCCTGGCTCTCAGGGCGCAACGGGC
GCTACTATCAACGGGAGTCAATTCTTCATTACGTTCGTGCCGGCGCCACATCTTGATGGCGCCAGTACTGTGTTT
GGGAAGGTGTTGAATTTGACCCCCCAGGACGAAGGGGGTGATGTTCTTACAAATATCGAGAAGGCGAATGTGAAG
GTCGATAAGAAGGGGAAAGTTTCTCAGCCCAAGGAGGGTGATGACTTTGAAGCATTCAAAATCAACAACGTTACT
ATCCACGCGAATCCATTCGCGAAGTGA
Transcript >Pro_DTO377G3_2|g696.t1
ATGTCTGTTACATTACATACCACCCAAGGCGACCTCAAGGTCGAGCTTTTCTGCGAAGCAGTACCCCAAACCGCA
GAGAACTTTCTCGCCCTCTGCGCATGCGGCGCATACAACAACACCCCATTTCACCGCCTCATCCCGGGATTCATG
GTCCAGGGCGGAGACATCTCTCTCGGCCCCGCCGCGCATCAAACAAGCATGAAACCAATGCTCGAGTTCGAGATC
CCAAAAGGCGGCACATCGATATACCACCCGGCAGCAATGAACCAAGAAATCCACCTCCCATCATTGCGACACAAT
GCGCGAGGCATTCTGTCTATGGCATCTCGTCCGGTGAAGGACAGGACGGCGCCTGGCTCTCAGGGCGCAACGGGC
GCTACTATCAACGGGAGTCAATTCTTCATTACGTTCGTGCCGGCGCCACATCTTGATGGCGCCAGTACTGTGTTT
GGGAAGGTGTTGAATTTGACCCCCCAGGACGAAGGGGGTGATGTTCTTACAAATATCGAGAAGGCGAATGTGAAG
GTCGATAAGAAGGGGAAAGTTTCTCAGCCCAAGGAGGGTGATGACTTTGAAGCATTCAAAATCAACAACGTTACT
ATCCACGCGAATCCATTCGCGAAGTGA
Gene >Pro_DTO377G3_2|g696.t1
ATGTCTGTTACAGTAAGTTCACATATAAATACGGCTTCCAATGATTCTGCAGCTCTACCTCCTACGGCAAGATGC
TAATTACAACTTGAACAGTTACATACCACCCAAGGCGACCTCAAGGTCGAGCTTTTCTGCGAAGCAGTACCCCAA
ACCGCAGAGAACTTTCTCGCCCTCTGCGCATGCGGCGCATACAACAACACCCCATTTCACCGCCTCATCCCGGGA
TTCATGGTCCAGGGCGGAGACATCTCTCTCGGCCCCGCCGCGCATCAAACAAGCATGAAACCAATGCTCGAGTTC
GAGATCCCAAAAGGCGGCACATCGATATACCACCCGGCAGCAATGAACCAAGAAATCCACCTCCCATCATTGCGA
CACAATGCGCGAGGCATTCTGTCTATGGCATCTCGTCCGGTGAAGGACAGGACGGCGCCTGGCTCTCAGGGCGCA
ACGGGCGCTACTATCAACGGGAGTCAATTCTTCATTACGTTCGTGCCGGCGCCACATCTTGATGGCGCCAGTACT
GTGTTTGGGAAGGTGTTGAATTTGACCCCCCAGGACGAAGGGGGTGATGTTCTTACAAATATCGAGAAGGCGAAT
GTGAAGGTCGATAAGAAGGGGAAAGTTTCTCAGCCCAAGGAGGGTGATGACTTTGAAGCATTCAAAATCAACAAC
GTTACTATCCACGCGAATCCATTCGCGAAGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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