Penicillium roqueforti LCP96 04111

General Properties

Protein ID	Pro_DTO377G3_2\|g6936.t1
Gene name
Location	scaffold_20:26163..27125
Strand	+
Gene length (bp)	962
Transcript length (bp)	609
Coding sequence length (bp)	609
Protein length (aa)	203

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF12678	zf-rbx1	RING-H2 zinc finger domain	3.6E-08	154	191
PF12861	zf-ANAPC11	Anaphase-promoting complex subunit 11 RING-H2 finger	2.3E-06	152	194
PF00097	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	8.0E-05	164	190

GO

GO Term	Description	Terminal node
GO:0008270	zinc ion binding	Yes
GO:0046872	metal ion binding	Yes
GO:0061630	ubiquitin protein ligase activity	Yes
GO:0005680	anaphase-promoting complex	Yes
GO:0031145	anaphase-promoting complex-dependent catabolic process	Yes
GO:0097602	cullin family protein binding	Yes
GO:0016740	transferase activity	No
GO:0046914	transition metal ion binding	No
GO:0000152	nuclear ubiquitin ligase complex	No
GO:0009056	catabolic process	No
GO:0005488	binding	No
GO:0009057	macromolecule catabolic process	No
GO:0031461	cullin-RING ubiquitin ligase complex	No
GO:0032991	protein-containing complex	No
GO:0008152	metabolic process	No
GO:0043170	macromolecule metabolic process	No
GO:0044260	cellular macromolecule metabolic process	No
GO:0005515	protein binding	No
GO:0005575	cellular_component	No
GO:0071704	organic substance metabolic process	No
GO:0008150	biological_process	No
GO:0019538	protein metabolic process	No
GO:0043167	ion binding	No
GO:1901565	organonitrogen compound catabolic process	No
GO:0000151	ubiquitin ligase complex	No
GO:0019787	ubiquitin-like protein transferase activity	No
GO:0140096	catalytic activity, acting on a protein	No
GO:0003824	catalytic activity	No
GO:0043169	cation binding	No
GO:0061659	ubiquitin-like protein ligase activity	No
GO:1902494	catalytic complex	No
GO:0044238	primary metabolic process	No
GO:0051603	proteolysis involved in protein catabolic process	No
GO:0009987	cellular process	No
GO:1901564	organonitrogen compound metabolic process	No
GO:0140513	nuclear protein-containing complex	No
GO:0044237	cellular metabolic process	No
GO:0004842	ubiquitin-protein transferase activity	No
GO:0010498	proteasomal protein catabolic process	No
GO:0006511	ubiquitin-dependent protein catabolic process	No
GO:1990234	transferase complex	No
GO:1901575	organic substance catabolic process	No
GO:0140535	intracellular protein-containing complex	No
GO:0006508	proteolysis	No
GO:0019941	modification-dependent protein catabolic process	No
GO:0006807	nitrogen compound metabolic process	No
GO:0043632	modification-dependent macromolecule catabolic process	No
GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	No
GO:0003674	molecular_function	No
GO:0044248	cellular catabolic process	No
GO:0030163	protein catabolic process	No
GO:0044265	cellular macromolecule catabolic process	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 11	0.5

Transmembrane Domains

Domain #	Start	End	Length
1	10	32	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
3d_25C	Three days - 25 degrees Celsius	2.76	0.00	5.69
5d_25C	Five days - 25 degrees Celsius	3.99	0.34	7.65
7d_25C	Seven days - 25 degrees Celsius	4.71	0.64	8.79
10d_25C	Ten days - 25 degrees Celsius	7.62	1.60	13.63
7d_15C	Seven days - 15 degrees Celsius	6.32	1.20	11.45
7d_30C	Seven days - 30 degrees Celsius	5.31	0.90	9.73

Differential expression

Label1	Label2	Q-value	Significant difference
3d_25C	5d_25C	0.586312	no
3d_25C	7d_25C	0.403010	no
3d_25C	7d_15C	0.142479	no
3d_25C	7d_30C	0.258672	no
3d_25C	10d_25C	0.071695	no
5d_25C	7d_25C	0.810977	no
5d_25C	7d_15C	0.377602	no
5d_25C	7d_30C	0.620725	no
5d_25C	10d_25C	0.185440	no
7d_25C	7d_15C	0.608432	no
7d_25C	7d_30C	0.860263	no
7d_25C	10d_25C	0.357356	no
7d_15C	7d_30C	0.771142	no
7d_15C	10d_25C	0.755441	no
7d_30C	10d_25C	0.489793	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Pro_DTO377G3_2\|g6936.t1 MADDSMPREEILGVVIGAVALFSLISMIPVMIMRHHRRRAAIRAMAAARVLPPVYQVQLQNVLGQPVSVDRWLEE QNVPANAQQYGQDTWAGHSVPPPYRDPRVFVEADPCPICLSALSSSPYLACPDPAVLADDQHNPNPTTRPDPRCS CGAHSPPDSEVLVLNRCKHAFHLDCLKSWFEYRRYKCPICQASYSPEEEARG*
Coding	>Pro_DTO377G3_2\|g6936.t1 ATGGCGGACGATTCTATGCCGCGAGAGGAGATACTCGGGGTTGTGATTGGGGCAGTTGCGCTGTTTTCCCTGATC AGCATGATTCCGGTCATGATCATGAGACATCACCGACGACGCGCCGCCATACGGGCCATGGCCGCAGCCCGAGTT CTCCCACCGGTATATCAGGTACAGTTGCAGAATGTGTTGGGCCAACCTGTGTCCGTGGACCGATGGTTGGAAGAA CAGAACGTGCCTGCCAATGCGCAACAATATGGCCAAGATACTTGGGCTGGGCATTCGGTCCCTCCGCCCTATCGG GATCCGCGAGTTTTCGTGGAGGCGGATCCATGCCCCATCTGTCTGTCAGCACTATCGTCGTCCCCATACCTCGCC TGTCCCGATCCAGCCGTGCTGGCTGACGACCAGCATAATCCCAACCCGACTACACGACCAGACCCCCGCTGCAGC TGCGGGGCACATTCCCCGCCCGATAGCGAGGTCCTCGTACTCAATCGCTGCAAGCATGCCTTCCATCTAGACTGT CTGAAGTCCTGGTTTGAATACCGTCGGTATAAGTGTCCGATCTGCCAAGCTTCGTATTCGCCAGAGGAGGAGGCA CGAGGATGA
Transcript	>Pro_DTO377G3_2\|g6936.t1 ATGGCGGACGATTCTATGCCGCGAGAGGAGATACTCGGGGTTGTGATTGGGGCAGTTGCGCTGTTTTCCCTGATC AGCATGATTCCGGTCATGATCATGAGACATCACCGACGACGCGCCGCCATACGGGCCATGGCCGCAGCCCGAGTT CTCCCACCGGTATATCAGGTACAGTTGCAGAATGTGTTGGGCCAACCTGTGTCCGTGGACCGATGGTTGGAAGAA CAGAACGTGCCTGCCAATGCGCAACAATATGGCCAAGATACTTGGGCTGGGCATTCGGTCCCTCCGCCCTATCGG GATCCGCGAGTTTTCGTGGAGGCGGATCCATGCCCCATCTGTCTGTCAGCACTATCGTCGTCCCCATACCTCGCC TGTCCCGATCCAGCCGTGCTGGCTGACGACCAGCATAATCCCAACCCGACTACACGACCAGACCCCCGCTGCAGC TGCGGGGCACATTCCCCGCCCGATAGCGAGGTCCTCGTACTCAATCGCTGCAAGCATGCCTTCCATCTAGACTGT CTGAAGTCCTGGTTTGAATACCGTCGGTATAAGTGTCCGATCTGCCAAGCTTCGTATTCGCCAGAGGAGGAGGCA CGAGGATGA
Gene	>Pro_DTO377G3_2\|g6936.t1 ATGGCGGACGATTCTATGCCGCGAGAGGAGATACTCGGGGTTGTGATTGGGGCAGTTGCGCTGTTTTCCCTGATC AGCATGATTCCGGTGTAAGTACGGAGGCGCGAGAAGTCTTGGCAACCCCCGCGCTTCATGCATGCGAATTGTTCT CGAACTTCCGAAGTGCCGATCACTGATTTGTATGATTTTCCGTCTAGCATGATCATGAGACATCACCGACGACGC GCCGCCATACGGGCCATGGCCGCAGCCCGAGTTCTCCCACCGGTATATCAGGTACAGTTGCAGAATGTGTTGGGC CAACCTGTGTCCGTGGACCGATGGTTGGAAGAACAGAACGTGCCTGCCAATGCGCAACAATATGGCCAAGATACT TGGTAAGTGCGCTATTCCAGCATTCCACCGGTCTCCGATTCCGGCTGCCCCTCCTCGAGCCTTTTGGCCCCGCGG CTGGATGATGTCGTGTGGGGACACTAGGGCTGGGCATTCGGTCCCTCCGCCCTATCGGGATCCGCGAGTTTTCGT GGAGGCGGATCCATGGTTTCTGGGCAAGGCGTTATTGCGCCCAAGGCCAATTTCCGGTGTTCCTGGATAAACACG CGTGGTCTTGGCTAGAGATAGCAGACCGTGCAAGCGACTCTGGACACATCGACTGAATCTTCTAGAATCAAGCTA ACTCACCCAGCCCCATCTGTCTGTCAGCACTATCGTCGTCCCCATACCTCGCCTGTCCCGATCCAGCCGTGCTGG CTGACGACCAGCATAATCCCAACCCGACTACACGACCAGACCCCCGCTGCAGCTGCGGGGCACATTCCCCGCCCG ATAGCGAGGTCCTCGTACTCAATCGCTGCAAGCATGCCTTCCATCTAGACTGTCTGAAGTCCTGGTTTGAATACC GTCGGTATAAGTGTCCGATCTGCCAAGCTTCGTATTCGCCAGAGGAGGAGGCACGAGGATGA

Fungal Genomics

General Properties

PFAM Domains

GO

SignalP

Transmembrane Domains

Transcription Factor Class

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Sequences