Protein ID | Pro_DTO377G3_2|g6936.t1 |
Gene name | |
Location | scaffold_20:26163..27125 |
Strand | + |
Gene length (bp) | 962 |
Transcript length (bp) | 609 |
Coding sequence length (bp) | 609 |
Protein length (aa) | 203 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF12678 | zf-rbx1 | RING-H2 zinc finger domain | 3.4E-08 | 153 | 191 |
PF12861 | zf-ANAPC11 | Anaphase-promoting complex subunit 11 RING-H2 finger | 2.1E-06 | 152 | 194 |
PF00097 | zf-C3HC4 | Zinc finger, C3HC4 type (RING finger) | 7.3E-05 | 164 | 190 |
GO Term | Description | Terminal node |
---|---|---|
GO:0008270 | zinc ion binding | Yes |
GO:0004842 | ubiquitin-protein transferase activity | Yes |
GO:0005680 | anaphase-promoting complex | Yes |
GO:0046872 | metal ion binding | Yes |
GO:0005488 | binding | No |
GO:1902494 | catalytic complex | No |
GO:0044464 | cell part | No |
GO:0031461 | cullin-RING ubiquitin ligase complex | No |
GO:0140096 | catalytic activity, acting on a protein | No |
GO:0043169 | cation binding | No |
GO:0019787 | ubiquitin-like protein transferase activity | No |
GO:0016740 | transferase activity | No |
GO:0044446 | intracellular organelle part | No |
GO:0003824 | catalytic activity | No |
GO:1990234 | transferase complex | No |
GO:0044424 | intracellular part | No |
GO:0000151 | ubiquitin ligase complex | No |
GO:0046914 | transition metal ion binding | No |
GO:0005575 | cellular_component | No |
GO:0032991 | protein-containing complex | No |
GO:0003674 | molecular_function | No |
GO:0043167 | ion binding | No |
GO:0044428 | nuclear part | No |
GO:0044422 | organelle part | No |
GO:0000152 | nuclear ubiquitin ligase complex | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 11 | 0.5 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 10 | 32 | 22 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Pro_DTO377G3_2|g6936.t1 MADDSMPREEILGVVIGAVALFSLISMIPVMIMRHHRRRAAIRAMAAARVLPPVYQVQLQNVLGQPVSVDRWLEE QNVPANAQQYGQDTWAGHSVPPPYRDPRVFVEADPCPICLSALSSSPYLACPDPAVLADDQHNPNPTTRPDPRCS CGAHSPPDSEVLVLNRCKHAFHLDCLKSWFEYRRYKCPICQASYSPEEEARG* |
Coding | >Pro_DTO377G3_2|g6936.t1 ATGGCGGACGATTCTATGCCGCGAGAGGAGATACTCGGGGTTGTGATTGGGGCAGTTGCGCTGTTTTCCCTGATC AGCATGATTCCGGTCATGATCATGAGACATCACCGACGACGCGCCGCCATACGGGCCATGGCCGCAGCCCGAGTT CTCCCACCGGTATATCAGGTACAGTTGCAGAATGTGTTGGGCCAACCTGTGTCCGTGGACCGATGGTTGGAAGAA CAGAACGTGCCTGCCAATGCGCAACAATATGGCCAAGATACTTGGGCTGGGCATTCGGTCCCTCCGCCCTATCGG GATCCGCGAGTTTTCGTGGAGGCGGATCCATGCCCCATCTGTCTGTCAGCACTATCGTCGTCCCCATACCTCGCC TGTCCCGATCCAGCCGTGCTGGCTGACGACCAGCATAATCCCAACCCGACTACACGACCAGACCCCCGCTGCAGC TGCGGGGCACATTCCCCGCCCGATAGCGAGGTCCTCGTACTCAATCGCTGCAAGCATGCCTTCCATCTAGACTGT CTGAAGTCCTGGTTTGAATACCGTCGGTATAAGTGTCCGATCTGCCAAGCTTCGTATTCGCCAGAGGAGGAGGCA CGAGGATGA |
Transcript | >Pro_DTO377G3_2|g6936.t1 ATGGCGGACGATTCTATGCCGCGAGAGGAGATACTCGGGGTTGTGATTGGGGCAGTTGCGCTGTTTTCCCTGATC AGCATGATTCCGGTCATGATCATGAGACATCACCGACGACGCGCCGCCATACGGGCCATGGCCGCAGCCCGAGTT CTCCCACCGGTATATCAGGTACAGTTGCAGAATGTGTTGGGCCAACCTGTGTCCGTGGACCGATGGTTGGAAGAA CAGAACGTGCCTGCCAATGCGCAACAATATGGCCAAGATACTTGGGCTGGGCATTCGGTCCCTCCGCCCTATCGG GATCCGCGAGTTTTCGTGGAGGCGGATCCATGCCCCATCTGTCTGTCAGCACTATCGTCGTCCCCATACCTCGCC TGTCCCGATCCAGCCGTGCTGGCTGACGACCAGCATAATCCCAACCCGACTACACGACCAGACCCCCGCTGCAGC TGCGGGGCACATTCCCCGCCCGATAGCGAGGTCCTCGTACTCAATCGCTGCAAGCATGCCTTCCATCTAGACTGT CTGAAGTCCTGGTTTGAATACCGTCGGTATAAGTGTCCGATCTGCCAAGCTTCGTATTCGCCAGAGGAGGAGGCA CGAGGATGA |
Gene | >Pro_DTO377G3_2|g6936.t1 ATGGCGGACGATTCTATGCCGCGAGAGGAGATACTCGGGGTTGTGATTGGGGCAGTTGCGCTGTTTTCCCTGATC AGCATGATTCCGGTGTAAGTACGGAGGCGCGAGAAGTCTTGGCAACCCCCGCGCTTCATGCATGCGAATTGTTCT CGAACTTCCGAAGTGCCGATCACTGATTTGTATGATTTTCCGTCTAGCATGATCATGAGACATCACCGACGACGC GCCGCCATACGGGCCATGGCCGCAGCCCGAGTTCTCCCACCGGTATATCAGGTACAGTTGCAGAATGTGTTGGGC CAACCTGTGTCCGTGGACCGATGGTTGGAAGAACAGAACGTGCCTGCCAATGCGCAACAATATGGCCAAGATACT TGGTAAGTGCGCTATTCCAGCATTCCACCGGTCTCCGATTCCGGCTGCCCCTCCTCGAGCCTTTTGGCCCCGCGG CTGGATGATGTCGTGTGGGGACACTAGGGCTGGGCATTCGGTCCCTCCGCCCTATCGGGATCCGCGAGTTTTCGT GGAGGCGGATCCATGGTTTCTGGGCAAGGCGTTATTGCGCCCAAGGCCAATTTCCGGTGTTCCTGGATAAACACG CGTGGTCTTGGCTAGAGATAGCAGACCGTGCAAGCGACTCTGGACACATCGACTGAATCTTCTAGAATCAAGCTA ACTCACCCAGCCCCATCTGTCTGTCAGCACTATCGTCGTCCCCATACCTCGCCTGTCCCGATCCAGCCGTGCTGG CTGACGACCAGCATAATCCCAACCCGACTACACGACCAGACCCCCGCTGCAGCTGCGGGGCACATTCCCCGCCCG ATAGCGAGGTCCTCGTACTCAATCGCTGCAAGCATGCCTTCCATCTAGACTGTCTGAAGTCCTGGTTTGAATACC GTCGGTATAAGTGTCCGATCTGCCAAGCTTCGTATTCGCCAGAGGAGGAGGCACGAGGATGA |