Fungal Genomics

at Utrecht University

General Properties

Protein ID	Pro_DTO377G3_2\|g6932.t1
Gene name
Location	scaffold_20:13606..15053
Strand	-
Gene length (bp)	1447
Transcript length (bp)	1287
Coding sequence length (bp)	1287
Protein length (aa)	429

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF03198	Glyco_hydro_72	Glucanosyltransferase	5.1E-59	4	257

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 20	0.45

Transmembrane Domains

Domain #	Start	End	Length
1	352	374	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
3d_25C	Three days - 25 degrees Celsius	2.96	0.67	5.25
5d_25C	Five days - 25 degrees Celsius	1.07	0.02	2.12
7d_25C	Seven days - 25 degrees Celsius	1.84	0.24	3.44
10d_25C	Ten days - 25 degrees Celsius	0.41	0.00	0.98
7d_15C	Seven days - 15 degrees Celsius	1.01	0.00	2.05
7d_30C	Seven days - 30 degrees Celsius	3.53	0.79	6.27

Differential expression

Label1	Label2	Q-value	Significant difference
3d_25C	5d_25C	0.047134	yes
3d_25C	7d_25C	0.356374	no
3d_25C	7d_15C	0.029538	yes
3d_25C	7d_30C	0.762269	no
3d_25C	10d_25C	0.013513	yes
5d_25C	7d_25C	0.343512	no
5d_25C	7d_15C	0.950741	no
5d_25C	7d_30C	0.016361	yes
5d_25C	10d_25C	0.196058	no
7d_25C	7d_15C	0.281205	no
7d_25C	7d_30C	0.172783	no
7d_25C	10d_25C	0.047134	yes
7d_15C	7d_30C	0.010083	yes
7d_15C	10d_25C	0.224981	no
7d_30C	10d_25C	0.007091	yes

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Pro_DTO377G3_2\|g6932.t1 MSLPVISVAGNGLLSRGHRFQIKGVDYIGDASGSTTIDVLADSRASQCAIDAPILKALGANTIRVYYTDATQGHD KCMQTFQDNGIYVIANMATQRAWTDVSSNIVNSPWQMGVFEQYAAVLDSMAGYSNLLGLLIGNNIISSQTITGQG PTVDLAPYLKAAARDMKAYAAARKYRAIPIGYATDSEYTYIQTLGEYLVCGGKSDEAIDFYAVNELGCNSSMSAS DYDVLTSRLGGLGVPVIISETSCNHHAPRLFEVSTQTTLADYNSLKRWSAVTANTLPPPTLPTPSCPSINAYWPI NPSAALPTIAGLGFATIQAAHAASTADGTRTSTSIRPRSTYSPPHNTSRGTMAGIGIGATSGVVLAFVGAFLFYR RQWKKKGRRHPSSSLPQTSGSSHQDAELGHIAVPAKSSHTDLPSQLPGSNPKA*
Coding	>Pro_DTO377G3_2\|g6932.t1 ATGTCACTGCCTGTTATCTCGGTCGCGGGGAATGGGTTATTGAGTAGGGGCCATCGATTTCAGATCAAAGGTGTC GATTACATCGGAGATGCCTCTGGTTCGACTACAATCGATGTTTTGGCAGATTCGAGGGCTAGCCAGTGCGCAATC GATGCGCCTATCCTCAAGGCACTCGGGGCCAACACTATCAGGGTGTACTATACAGATGCGACTCAGGGTCACGAT AAATGCATGCAGACTTTCCAGGACAATGGAATATACGTGATTGCAAACATGGCAACTCAAAGAGCTTGGACGGAT GTCAGCTCGAACATAGTCAACTCACCATGGCAAATGGGCGTTTTCGAACAATATGCGGCTGTTCTTGATTCAATG GCCGGGTATAGCAATCTCCTGGGGCTTCTTATTGGAAATAATATTATTTCCAGCCAAACTATTACTGGTCAAGGC CCTACAGTCGACCTAGCCCCATACCTAAAGGCCGCAGCCCGGGATATGAAAGCTTATGCTGCTGCTAGGAAGTAC CGCGCTATACCTATTGGATACGCCACAGATTCAGAGTATACCTATATCCAAACGTTGGGAGAATACTTGGTGTGC GGAGGAAAAAGTGACGAGGCTATCGACTTCTATGCAGTCAACGAACTCGGGTGCAACTCGTCCATGAGCGCCTCT GACTACGATGTATTGACGTCGAGGCTAGGAGGCCTAGGGGTTCCCGTTATCATCTCTGAAACTAGCTGCAACCAC CATGCGCCGCGGCTCTTCGAGGTTAGCACGCAAACAACCCTGGCCGACTACAATTCGTTGAAAAGGTGGTCTGCC GTGACTGCAAATACCCTCCCTCCACCTACGCTTCCTACTCCTTCCTGTCCATCGATCAATGCATACTGGCCTATC AACCCCAGTGCCGCATTGCCAACGATTGCAGGTCTTGGCTTTGCGACGATCCAAGCAGCGCATGCTGCCAGTACC GCGGATGGAACCCGCACGAGTACTAGCATACGCCCCAGGAGCACCTATAGCCCGCCACACAATACTTCAAGGGGT ACAATGGCTGGAATCGGTATCGGTGCTACGTCTGGCGTAGTGCTCGCTTTCGTCGGCGCGTTCCTATTTTACAGG CGCCAATGGAAAAAGAAAGGACGAAGACATCCATCATCTTCGTTACCACAGACGTCGGGAAGTTCTCATCAAGAC GCTGAATTGGGTCACATCGCTGTGCCGGCTAAATCATCTCATACTGATTTACCGAGTCAACTACCAGGCTCGAAT CCTAAGGCCTGA
Transcript	>Pro_DTO377G3_2\|g6932.t1 ATGTCACTGCCTGTTATCTCGGTCGCGGGGAATGGGTTATTGAGTAGGGGCCATCGATTTCAGATCAAAGGTGTC GATTACATCGGAGATGCCTCTGGTTCGACTACAATCGATGTTTTGGCAGATTCGAGGGCTAGCCAGTGCGCAATC GATGCGCCTATCCTCAAGGCACTCGGGGCCAACACTATCAGGGTGTACTATACAGATGCGACTCAGGGTCACGAT AAATGCATGCAGACTTTCCAGGACAATGGAATATACGTGATTGCAAACATGGCAACTCAAAGAGCTTGGACGGAT GTCAGCTCGAACATAGTCAACTCACCATGGCAAATGGGCGTTTTCGAACAATATGCGGCTGTTCTTGATTCAATG GCCGGGTATAGCAATCTCCTGGGGCTTCTTATTGGAAATAATATTATTTCCAGCCAAACTATTACTGGTCAAGGC CCTACAGTCGACCTAGCCCCATACCTAAAGGCCGCAGCCCGGGATATGAAAGCTTATGCTGCTGCTAGGAAGTAC CGCGCTATACCTATTGGATACGCCACAGATTCAGAGTATACCTATATCCAAACGTTGGGAGAATACTTGGTGTGC GGAGGAAAAAGTGACGAGGCTATCGACTTCTATGCAGTCAACGAACTCGGGTGCAACTCGTCCATGAGCGCCTCT GACTACGATGTATTGACGTCGAGGCTAGGAGGCCTAGGGGTTCCCGTTATCATCTCTGAAACTAGCTGCAACCAC CATGCGCCGCGGCTCTTCGAGGTTAGCACGCAAACAACCCTGGCCGACTACAATTCGTTGAAAAGGTGGTCTGCC GTGACTGCAAATACCCTCCCTCCACCTACGCTTCCTACTCCTTCCTGTCCATCGATCAATGCATACTGGCCTATC AACCCCAGTGCCGCATTGCCAACGATTGCAGGTCTTGGCTTTGCGACGATCCAAGCAGCGCATGCTGCCAGTACC GCGGATGGAACCCGCACGAGTACTAGCATACGCCCCAGGAGCACCTATAGCCCGCCACACAATACTTCAAGGGGT ACAATGGCTGGAATCGGTATCGGTGCTACGTCTGGCGTAGTGCTCGCTTTCGTCGGCGCGTTCCTATTTTACAGG CGCCAATGGAAAAAGAAAGGACGAAGACATCCATCATCTTCGTTACCACAGACGTCGGGAAGTTCTCATCAAGAC GCTGAATTGGGTCACATCGCTGTGCCGGCTAAATCATCTCATACTGATTTACCGAGTCAACTACCAGGCTCGAAT CCTAAGGCCTGA
Gene	>Pro_DTO377G3_2\|g6932.t1 ATGTCACTGCCTGTTATCTCGGTCGCGGGGAATGGGTTATTGAGTAGGGGCCATCGATTTCAGATCAAAGGTAAG ATCATTTGAACTGTGTTATCGATGCCAAGCCAAGATAACATCTGAAACAGGTGTCGATTACATCGGAGATGCCTC TGGTTCGACTACAATCGATGTTTTGGCAGATTCGAGGGCTAGCCAGTGCGCAATCGATGCGCCTATCCTCAAGGC ACTCGGGGCCAACACTATCAGGGTGTACTATACAGATGCGACTCAGGGTCACGATAAATGCATGCAGACTTTCCA GGACAATGGAATATACGTGATTGCAAACATGGCAACTCAAAGAGCTTGGACGGATGTCAGCTCGAACATAGTAAG CATTTCCGGTTGCTCGTGTAATTTTTATGGATAATAACATCTCTGCAAGGTCAACTCACCATGGCAAATGGGCGT TTTCGAACAATATGCGGCTGTTCTTGATTCAATGGCCGGGTATAGCAATCTCCTGGGGCTTCTTATTGGAAATAA TATTATTTCCAGCCAAACTATTACTGGTCAAGGTATGAAACCCACCGCTCACAGTCTTTGCGCTCACTAAATGTA TGACATAGGCCCTACAGTCGACCTAGCCCCATACCTAAAGGCCGCAGCCCGGGATATGAAAGCTTATGCTGCTGC TAGGAAGTACCGCGCTATACCTATTGGATACGCCACAGATTCAGAGTATACCTATATCCAAACGTTGGGAGAATA CTTGGTGTGCGGAGGAAAAAGTGACGAGGCTATCGACTTCTATGCAGTCAACGAACTCGGGTGCAACTCGTCCAT GAGCGCCTCTGACTACGATGTATTGACGTCGAGGCTAGGAGGCCTAGGGGTTCCCGTTATCATCTCTGAAACTAG CTGCAACCACCATGCGCCGCGGCTCTTCGAGGTTAGCACGCAAACAACCCTGGCCGACTACAATTCGTTGAAAAG GTGGTCTGCCGTGACTGCAAATACCCTCCCTCCACCTACGCTTCCTACTCCTTCCTGTCCATCGATCAATGCATA CTGGCCTATCAACCCCAGTGCCGCATTGCCAACGATTGCAGGTCTTGGCTTTGCGACGATCCAAGCAGCGCATGC TGCCAGTACCGCGGATGGAACCCGCACGAGTACTAGCATACGCCCCAGGAGCACCTATAGCCCGCCACACAATAC TTCAAGGGGTACAATGGCTGGAATCGGTATCGGTGCTACGTCTGGCGTAGTGCTCGCTTTCGTCGGCGCGTTCCT ATTTTACAGGCGCCAATGGAAAAAGAAAGGACGAAGACATCCATCATCTTCGTTACCACAGACGTCGGGAAGTTC TCATCAAGACGCTGAATTGGGTCACATCGCTGTGCCGGCTAAATCATCTCATACTGATTTACCGAGTCAACTACC AGGCTCGAATCCTAAGGCCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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