© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6930.t1 |
| Gene name | |
| Location | scaffold_20:1840..3613 |
| Strand | + |
| Gene length (bp) | 1773 |
| Transcript length (bp) | 1680 |
| Coding sequence length (bp) | 1680 |
| Protein length (aa) | 560 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01565 | FAD_binding_4 | FAD binding domain | 1.7E-22 | 114 | 253 |
| PF08031 | BBE | Berberine and berberine like | 5.7E-11 | 500 | 539 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0050660 | flavin adenine dinucleotide binding | Yes |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0043168 | anion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0036094 | small molecule binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 23 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 37.04 | 21.65 | 52.44 |
| 5d_25C | Five days - 25 degrees Celsius | 19.84 | 10.14 | 29.54 |
| 7d_25C | Seven days - 25 degrees Celsius | 16.32 | 7.91 | 24.74 |
| 10d_25C | Ten days - 25 degrees Celsius | 8.28 | 2.95 | 13.61 |
| 7d_15C | Seven days - 15 degrees Celsius | 27.73 | 15.50 | 39.95 |
| 7d_30C | Seven days - 30 degrees Celsius | 15.10 | 7.11 | 23.10 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.009446 | yes |
| 3d_25C | 7d_25C | 0.001804 | yes |
| 3d_25C | 7d_15C | 0.261495 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.572225 | no |
| 5d_25C | 7d_15C | 0.214422 | no |
| 5d_25C | 7d_30C | 0.388651 | no |
| 5d_25C | 10d_25C | 0.004840 | yes |
| 7d_25C | 7d_15C | 0.041414 | yes |
| 7d_25C | 7d_30C | 0.850991 | no |
| 7d_25C | 10d_25C | 0.032181 | yes |
| 7d_15C | 7d_30C | 0.015268 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.060203 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6930.t1 MKWTLPSLVAIAAPAIASNCHCLPSDSCWPAPSAWASLNHTVGGRLVATVPIGTPCHAPNYDAAACAALKTDWNK PQTHLESSSSVMQMFFANQSCDPYTSKNKPCRLGNYVNYAVNVSSSAQVIAAVNFARDNNIRFVIRNTGHDYLGR STGAGALSVWTHHLNDIEYQDWSGPTYTGPAFKIEAGVVGYQILEAAAAKGLVVVGGECPTVGLAGGYTQGGGHS ALSSNFGLGADNTLEFEVVTAAGDLVKASRTENPDLFWALSGGGAGNYGVVISLVVKAYQDASIAGAALEFTAAD ITTDTFYEAVSQFHALLPAMVDHGVTVIYQMTKSVFIIDPITAYNQTTDDVKAILEPFTSKLTELNITYQASFTE HDSYYDHYNTYMGPLPWGNLDVGAYQYGGRLIPRSTLEQNYNGMGDALRTLTQGGLVAVGVGMNVSNPVNVSNAV FPALRNAAVTMQFGLPWNETAPWSEMIADQKKITTKYVPALEAVTPDSGCYQNEADFRQPNWQQTFFGSNYAPLL TIKRKWDPSSFFYALKAVGSDAWSVSDSGRMCRT* |
| Coding | >Pro_DTO377G3_2|g6930.t1 ATGAAGTGGACATTGCCTTCCCTCGTGGCTATTGCCGCCCCGGCTATTGCGTCCAACTGTCACTGTTTACCAAGC GATAGCTGTTGGCCTGCCCCATCGGCTTGGGCATCCCTCAACCACACCGTTGGTGGTCGCCTGGTTGCTACCGTC CCTATCGGTACCCCCTGCCATGCACCCAACTACGATGCTGCCGCCTGTGCAGCGCTCAAGACCGACTGGAACAAA CCCCAGACCCATCTTGAGTCCTCTTCATCGGTGATGCAAATGTTCTTTGCCAACCAGAGTTGCGACCCATACACG TCCAAGAATAAGCCGTGCCGCCTCGGCAACTACGTGAACTACGCTGTGAACGTCTCTTCCAGCGCGCAGGTCATT GCTGCTGTCAATTTTGCCCGTGATAACAATATCCGCTTCGTTATCCGTAATACCGGCCATGACTACCTTGGCCGT TCAACTGGTGCCGGTGCCCTCTCTGTTTGGACTCACCACTTGAATGATATCGAGTACCAGGACTGGTCTGGTCCG ACCTACACAGGCCCTGCCTTCAAGATCGAGGCTGGTGTAGTTGGTTACCAGATCCTCGAGGCTGCAGCCGCCAAA GGCCTCGTCGTCGTCGGTGGCGAATGTCCCACGGTCGGCCTCGCCGGTGGCTACACCCAAGGCGGCGGTCACTCC GCCCTCAGCAGCAACTTCGGTCTTGGTGCCGATAACACCCTAGAGTTCGAAGTTGTCACCGCCGCTGGCGACCTG GTCAAGGCCTCGCGCACCGAGAACCCCGATCTCTTCTGGGCACTGAGCGGTGGCGGCGCCGGCAACTACGGCGTT GTCATCTCCCTAGTTGTCAAGGCATACCAAGACGCGTCCATTGCCGGTGCCGCTCTTGAGTTCACCGCAGCTGAC ATCACCACCGACACCTTCTACGAGGCTGTTTCGCAGTTCCATGCTCTGCTGCCCGCCATGGTCGACCACGGTGTG ACTGTCATATACCAGATGACCAAGAGCGTCTTCATCATCGACCCCATCACAGCCTACAACCAGACTACCGATGAC GTCAAAGCCATCCTCGAGCCATTCACCTCGAAGCTCACCGAGCTGAACATCACGTACCAAGCCAGCTTCACCGAG CACGACTCGTACTATGACCACTACAACACGTACATGGGTCCTCTTCCTTGGGGCAACCTTGACGTGGGCGCCTAC CAATACGGCGGACGTCTGATTCCCCGCAGCACCCTCGAGCAGAACTACAACGGGATGGGCGACGCACTGCGCACC CTGACCCAGGGCGGCTTGGTCGCCGTCGGAGTCGGCATGAACGTCTCCAACCCAGTCAACGTCTCCAACGCAGTC TTCCCAGCCCTGCGCAACGCAGCCGTGACGATGCAATTCGGCCTGCCGTGGAACGAGACCGCGCCTTGGTCCGAG ATGATTGCGGACCAAAAGAAGATTACGACTAAATATGTGCCTGCGCTCGAGGCTGTCACTCCTGACAGCGGCTGC TACCAGAATGAGGCTGATTTCCGCCAGCCGAACTGGCAGCAGACCTTCTTCGGAAGCAACTACGCCCCTCTGCTT ACTATCAAGCGCAAGTGGGATCCTTCGTCGTTCTTCTATGCCCTCAAGGCTGTTGGCAGTGATGCCTGGTCTGTG TCTGATTCGGGGCGGATGTGCCGTACTTGA |
| Transcript | >Pro_DTO377G3_2|g6930.t1 ATGAAGTGGACATTGCCTTCCCTCGTGGCTATTGCCGCCCCGGCTATTGCGTCCAACTGTCACTGTTTACCAAGC GATAGCTGTTGGCCTGCCCCATCGGCTTGGGCATCCCTCAACCACACCGTTGGTGGTCGCCTGGTTGCTACCGTC CCTATCGGTACCCCCTGCCATGCACCCAACTACGATGCTGCCGCCTGTGCAGCGCTCAAGACCGACTGGAACAAA CCCCAGACCCATCTTGAGTCCTCTTCATCGGTGATGCAAATGTTCTTTGCCAACCAGAGTTGCGACCCATACACG TCCAAGAATAAGCCGTGCCGCCTCGGCAACTACGTGAACTACGCTGTGAACGTCTCTTCCAGCGCGCAGGTCATT GCTGCTGTCAATTTTGCCCGTGATAACAATATCCGCTTCGTTATCCGTAATACCGGCCATGACTACCTTGGCCGT TCAACTGGTGCCGGTGCCCTCTCTGTTTGGACTCACCACTTGAATGATATCGAGTACCAGGACTGGTCTGGTCCG ACCTACACAGGCCCTGCCTTCAAGATCGAGGCTGGTGTAGTTGGTTACCAGATCCTCGAGGCTGCAGCCGCCAAA GGCCTCGTCGTCGTCGGTGGCGAATGTCCCACGGTCGGCCTCGCCGGTGGCTACACCCAAGGCGGCGGTCACTCC GCCCTCAGCAGCAACTTCGGTCTTGGTGCCGATAACACCCTAGAGTTCGAAGTTGTCACCGCCGCTGGCGACCTG GTCAAGGCCTCGCGCACCGAGAACCCCGATCTCTTCTGGGCACTGAGCGGTGGCGGCGCCGGCAACTACGGCGTT GTCATCTCCCTAGTTGTCAAGGCATACCAAGACGCGTCCATTGCCGGTGCCGCTCTTGAGTTCACCGCAGCTGAC ATCACCACCGACACCTTCTACGAGGCTGTTTCGCAGTTCCATGCTCTGCTGCCCGCCATGGTCGACCACGGTGTG ACTGTCATATACCAGATGACCAAGAGCGTCTTCATCATCGACCCCATCACAGCCTACAACCAGACTACCGATGAC GTCAAAGCCATCCTCGAGCCATTCACCTCGAAGCTCACCGAGCTGAACATCACGTACCAAGCCAGCTTCACCGAG CACGACTCGTACTATGACCACTACAACACGTACATGGGTCCTCTTCCTTGGGGCAACCTTGACGTGGGCGCCTAC CAATACGGCGGACGTCTGATTCCCCGCAGCACCCTCGAGCAGAACTACAACGGGATGGGCGACGCACTGCGCACC CTGACCCAGGGCGGCTTGGTCGCCGTCGGAGTCGGCATGAACGTCTCCAACCCAGTCAACGTCTCCAACGCAGTC TTCCCAGCCCTGCGCAACGCAGCCGTGACGATGCAATTCGGCCTGCCGTGGAACGAGACCGCGCCTTGGTCCGAG ATGATTGCGGACCAAAAGAAGATTACGACTAAATATGTGCCTGCGCTCGAGGCTGTCACTCCTGACAGCGGCTGC TACCAGAATGAGGCTGATTTCCGCCAGCCGAACTGGCAGCAGACCTTCTTCGGAAGCAACTACGCCCCTCTGCTT ACTATCAAGCGCAAGTGGGATCCTTCGTCGTTCTTCTATGCCCTCAAGGCTGTTGGCAGTGATGCCTGGTCTGTG TCTGATTCGGGGCGGATGTGCCGTACTTGA |
| Gene | >Pro_DTO377G3_2|g6930.t1 ATGAAGTGGACATTGCCTTCCCTCGTGGCTATTGCCGCCCCGGCTATTGCGTCCAACTGTCACTGTTTACCAAGC GATAGCTGTTGGCCTGCCCCATCGGCTTGGGCATCCCTCAACCACACCGTTGGTGGTCGCCTGGTTGCTACCGTC CCTATCGGTACCCCCTGCCATGCACCCAACTACGATGCTGCCGCCTGTGCAGCGCTCAAGACCGACTGGAACAAA CCCCAGACCCAGTAAGTGGTGCTAGTATGGCAAAATTGACATCGCTAATTGCCCCAGTCTTGAGTCCTCTTCATC GGTGATGCAAATGTTCTTTGCCAACCAGAGTTGCGACCCATACACGTCCAAGAATAAGCCGTGCCGCCTCGGCAA CTACGTGAACTACGCTGTGAACGTCTCTTCCAGCGCGCAGGTCATTGCTGCTGTCAATTTTGCCCGTGATAACAA TATCCGCTTCGTTATCCGTAATACCGGCCATGAGTAAGTCGCCTCAATAATCCTCTACAGATAAATGCTGATTGA TGTAGCTACCTTGGCCGTTCAACTGGTGCCGGTGCCCTCTCTGTTTGGACTCACCACTTGAATGATATCGAGTAC CAGGACTGGTCTGGTCCGACCTACACAGGCCCTGCCTTCAAGATCGAGGCTGGTGTAGTTGGTTACCAGATCCTC GAGGCTGCAGCCGCCAAAGGCCTCGTCGTCGTCGGTGGCGAATGTCCCACGGTCGGCCTCGCCGGTGGCTACACC CAAGGCGGCGGTCACTCCGCCCTCAGCAGCAACTTCGGTCTTGGTGCCGATAACACCCTAGAGTTCGAAGTTGTC ACCGCCGCTGGCGACCTGGTCAAGGCCTCGCGCACCGAGAACCCCGATCTCTTCTGGGCACTGAGCGGTGGCGGC GCCGGCAACTACGGCGTTGTCATCTCCCTAGTTGTCAAGGCATACCAAGACGCGTCCATTGCCGGTGCCGCTCTT GAGTTCACCGCAGCTGACATCACCACCGACACCTTCTACGAGGCTGTTTCGCAGTTCCATGCTCTGCTGCCCGCC ATGGTCGACCACGGTGTGACTGTCATATACCAGATGACCAAGAGCGTCTTCATCATCGACCCCATCACAGCCTAC AACCAGACTACCGATGACGTCAAAGCCATCCTCGAGCCATTCACCTCGAAGCTCACCGAGCTGAACATCACGTAC CAAGCCAGCTTCACCGAGCACGACTCGTACTATGACCACTACAACACGTACATGGGTCCTCTTCCTTGGGGCAAC CTTGACGTGGGCGCCTACCAATACGGCGGACGTCTGATTCCCCGCAGCACCCTCGAGCAGAACTACAACGGGATG GGCGACGCACTGCGCACCCTGACCCAGGGCGGCTTGGTCGCCGTCGGAGTCGGCATGAACGTCTCCAACCCAGTC AACGTCTCCAACGCAGTCTTCCCAGCCCTGCGCAACGCAGCCGTGACGATGCAATTCGGCCTGCCGTGGAACGAG ACCGCGCCTTGGTCCGAGATGATTGCGGACCAAAAGAAGATTACGACTAAATATGTGCCTGCGCTCGAGGCTGTC ACTCCTGACAGCGGCTGCTACCAGAATGAGGCTGATTTCCGCCAGCCGAACTGGCAGCAGACCTTCTTCGGAAGC AACTACGCCCCTCTGCTTACTATCAAGCGCAAGTGGGATCCTTCGTCGTTCTTCTATGCCCTCAAGGCTGTTGGC AGTGATGCCTGGTCTGTGTCTGATTCGGGGCGGATGTGCCGTACTTGA |