Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g6923.t1
Gene name
Locationscaffold_19:371124..371639
Strand-
Gene length (bp)515
Transcript length (bp)399
Coding sequence length (bp)399
Protein length (aa) 133

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF16211 Histone_H2A_C C-terminus of histone H2A 1.5E-20 93 126
PF00125 Histone Core histone H2A/H2B/H3/H4 5.3E-15 13 90
PF00808 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone 2.8E-05 27 89

GO

GO Term Description Terminal node
GO:0003677 DNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 30 0.45

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class
(based on PFAM domains)
Histone-like TF

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g6923.t1
MTGGKSGGKASGSKNAQSRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDN
KKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTPKAGKGSQEL*
Coding >Pro_DTO377G3_2|g6923.t1
ATGACTGGCGGAAAGTCCGGCGGCAAGGCTAGCGGCAGCAAGAACGCGCAGTCTCGTTCCTCCAAGGCTGGTTTG
GCCTTCCCCGTTGGCCGTGTCCACCGTCTGCTTCGCAAGGGCAACTACGCCCAGCGTGTCGGTGCCGGTGCTCCC
GTTTACCTCGCTGCTGTTCTTGAGTACCTCGCTGCTGAGATTCTCGAGCTGGCTGGAAACGCCGCTCGCGACAAC
AAGAAGACCCGTATCATTCCCCGTCACCTCCAGCTTGCCATTCGCAACGATGAGGAGCTGAACAAGCTTCTGGGT
CACGTCACCATTGCCCAGGGTGGTGTTCTCCCCAACATTCACCAGAACCTTCTCCCCAAGAAGACTCCCAAGGCC
GGCAAGGGCAGCCAGGAGCTGTAA
Transcript >Pro_DTO377G3_2|g6923.t1
ATGACTGGCGGAAAGTCCGGCGGCAAGGCTAGCGGCAGCAAGAACGCGCAGTCTCGTTCCTCCAAGGCTGGTTTG
GCCTTCCCCGTTGGCCGTGTCCACCGTCTGCTTCGCAAGGGCAACTACGCCCAGCGTGTCGGTGCCGGTGCTCCC
GTTTACCTCGCTGCTGTTCTTGAGTACCTCGCTGCTGAGATTCTCGAGCTGGCTGGAAACGCCGCTCGCGACAAC
AAGAAGACCCGTATCATTCCCCGTCACCTCCAGCTTGCCATTCGCAACGATGAGGAGCTGAACAAGCTTCTGGGT
CACGTCACCATTGCCCAGGGTGGTGTTCTCCCCAACATTCACCAGAACCTTCTCCCCAAGAAGACTCCCAAGGCC
GGCAAGGGCAGCCAGGAGCTGTAA
Gene >Pro_DTO377G3_2|g6923.t1
ATGACTGGCGGAAAGTCCGGCGGCAAGGCTAGCGGCAGCAAGAACGCGCAGTCGTGAGTTGTTTACATTTCGCTT
CTTACATATGCGTTTCATACTGACATCAACATCTTCAGTCGTTCCTCCAAGGCTGGTTTGGCCTTCCCCGTTGGC
CGTGTCCACCGTCTGCTTCGCAAGGGCAACTACGCCCAGCGTGTCGGTGCCGGTGCTCCCGTTTACCTCGCTGCT
GTTCTTGAGTACCTCGCTGCTGAGATTCTCGAGCTGGCTGGAAACGCCGCTCGCGACAACAAGAAGACCCGTATC
ATTCCCCGTCACCTCCAGCTTGCCATTCGCAACGATGAGGAGCTGAACAAGCTTCTGGGTCACGTCACCATTGCC
CAGGGTGGTGTTCTCCCCAACATTCACCAGAGTACGTTCTCTCTCAAACCAATCGTTTCTTTTCCACCATGCTAA
CATGAATCTCAGACCTTCTCCCCAAGAAGACTCCCAAGGCCGGCAAGGGCAGCCAGGAGCTGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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