© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6920.t1 |
| Gene name | |
| Location | scaffold_19:366599..367377 |
| Strand | + |
| Gene length (bp) | 778 |
| Transcript length (bp) | 726 |
| Coding sequence length (bp) | 726 |
| Protein length (aa) | 242 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 38 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 76.75 | 43.03 | 110.47 |
| 5d_25C | Five days - 25 degrees Celsius | 106.88 | 63.04 | 150.73 |
| 7d_25C | Seven days - 25 degrees Celsius | 102.73 | 59.99 | 145.48 |
| 10d_25C | Ten days - 25 degrees Celsius | 123.46 | 73.73 | 173.19 |
| 7d_15C | Seven days - 15 degrees Celsius | 100.19 | 58.29 | 142.10 |
| 7d_30C | Seven days - 30 degrees Celsius | 112.07 | 66.04 | 158.10 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.175982 | no |
| 3d_25C | 7d_25C | 0.250316 | no |
| 3d_25C | 7d_15C | 0.304807 | no |
| 3d_25C | 7d_30C | 0.108699 | no |
| 3d_25C | 10d_25C | 0.033253 | yes |
| 5d_25C | 7d_25C | 0.911898 | no |
| 5d_25C | 7d_15C | 0.848577 | no |
| 5d_25C | 7d_30C | 0.888539 | no |
| 5d_25C | 10d_25C | 0.608528 | no |
| 7d_25C | 7d_15C | 0.945358 | no |
| 7d_25C | 7d_30C | 0.783524 | no |
| 7d_25C | 10d_25C | 0.491949 | no |
| 7d_15C | 7d_30C | 0.713110 | no |
| 7d_15C | 10d_25C | 0.423169 | no |
| 7d_30C | 10d_25C | 0.749008 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6920.t1 MADRGPGTAATVDLLILDYMVCLCISGLLEGISQARASEDIEYFALFVEQLHRRLALHHLESPLPWDLDFKLRIF YMSNLFLHWYPPKDYDMGPFVPLSDIAVHFLDLCLDAVAHVSRGRWFDLGAHFMVHAMLEEHARFPDQLDALCNW RTNDSELDIWWEVSRNWFLGHMPPPFGTAGPMSQAEINEGFPLQALQHRYVEFFEDLMDVLDVPLLLQLEQGQLE GLTREETRQVREYCGI* |
| Coding | >Pro_DTO377G3_2|g6920.t1 ATGGCGGACCGAGGCCCTGGCACAGCAGCGACTGTGGATCTGCTGATTCTCGACTACATGGTCTGCCTATGTATC AGCGGACTCCTAGAAGGTATTTCACAAGCAAGAGCATCCGAGGACATTGAATACTTTGCGCTTTTTGTTGAACAG CTCCACCGGCGGCTTGCCCTCCATCACCTCGAAAGCCCCCTGCCCTGGGACCTAGATTTCAAATTGCGCATCTTC TACATGTCCAATCTATTTCTCCACTGGTACCCCCCCAAAGACTACGACATGGGTCCCTTTGTTCCTCTGTCTGAT ATCGCAGTCCATTTCTTGGACCTATGCCTCGATGCAGTCGCCCACGTATCCCGGGGACGCTGGTTCGACCTCGGT GCTCACTTCATGGTCCATGCGATGTTAGAAGAACATGCGCGTTTCCCCGACCAGCTAGACGCACTCTGCAACTGG AGAACCAACGACAGTGAACTCGATATATGGTGGGAGGTCAGCCGTAACTGGTTCCTTGGGCACATGCCACCCCCA TTTGGTACGGCGGGTCCAATGAGCCAAGCAGAGATTAATGAGGGGTTTCCCCTCCAAGCACTGCAGCATCGTTAT GTCGAGTTCTTCGAGGACCTCATGGATGTACTGGATGTGCCCCTTCTTCTTCAGCTGGAGCAAGGTCAGCTGGAA GGTTTGACTCGGGAGGAGACCCGACAGGTTCGAGAGTATTGTGGAATTTAA |
| Transcript | >Pro_DTO377G3_2|g6920.t1 ATGGCGGACCGAGGCCCTGGCACAGCAGCGACTGTGGATCTGCTGATTCTCGACTACATGGTCTGCCTATGTATC AGCGGACTCCTAGAAGGTATTTCACAAGCAAGAGCATCCGAGGACATTGAATACTTTGCGCTTTTTGTTGAACAG CTCCACCGGCGGCTTGCCCTCCATCACCTCGAAAGCCCCCTGCCCTGGGACCTAGATTTCAAATTGCGCATCTTC TACATGTCCAATCTATTTCTCCACTGGTACCCCCCCAAAGACTACGACATGGGTCCCTTTGTTCCTCTGTCTGAT ATCGCAGTCCATTTCTTGGACCTATGCCTCGATGCAGTCGCCCACGTATCCCGGGGACGCTGGTTCGACCTCGGT GCTCACTTCATGGTCCATGCGATGTTAGAAGAACATGCGCGTTTCCCCGACCAGCTAGACGCACTCTGCAACTGG AGAACCAACGACAGTGAACTCGATATATGGTGGGAGGTCAGCCGTAACTGGTTCCTTGGGCACATGCCACCCCCA TTTGGTACGGCGGGTCCAATGAGCCAAGCAGAGATTAATGAGGGGTTTCCCCTCCAAGCACTGCAGCATCGTTAT GTCGAGTTCTTCGAGGACCTCATGGATGTACTGGATGTGCCCCTTCTTCTTCAGCTGGAGCAAGGTCAGCTGGAA GGTTTGACTCGGGAGGAGACCCGACAGGTTCGAGAGTATTGTGGAATTTAA |
| Gene | >Pro_DTO377G3_2|g6920.t1 ATGGCGGACCGAGGCCCTGGCACAGCAGCGACTGTGGATCTGCTGATTCTCGACTACATGGTCTGCCTATGTATC AGCGGACTCCTAGAAGGTATTTCACAAGCAAGAGCATCCGAGGACATTGAATACTTTGCGCTTTTTGTTGAACGT AAGCACCAGAACTGCCAGCAATGGACCATGCATACTGAATATGGCTCTAGAGCTCCACCGGCGGCTTGCCCTCCA TCACCTCGAAAGCCCCCTGCCCTGGGACCTAGATTTCAAATTGCGCATCTTCTACATGTCCAATCTATTTCTCCA CTGGTACCCCCCCAAAGACTACGACATGGGTCCCTTTGTTCCTCTGTCTGATATCGCAGTCCATTTCTTGGACCT ATGCCTCGATGCAGTCGCCCACGTATCCCGGGGACGCTGGTTCGACCTCGGTGCTCACTTCATGGTCCATGCGAT GTTAGAAGAACATGCGCGTTTCCCCGACCAGCTAGACGCACTCTGCAACTGGAGAACCAACGACAGTGAACTCGA TATATGGTGGGAGGTCAGCCGTAACTGGTTCCTTGGGCACATGCCACCCCCATTTGGTACGGCGGGTCCAATGAG CCAAGCAGAGATTAATGAGGGGTTTCCCCTCCAAGCACTGCAGCATCGTTATGTCGAGTTCTTCGAGGACCTCAT GGATGTACTGGATGTGCCCCTTCTTCTTCAGCTGGAGCAAGGTCAGCTGGAAGGTTTGACTCGGGAGGAGACCCG ACAGGTTCGAGAGTATTGTGGAATTTAA |