© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6912.t1 |
| Gene name | tppA |
| Location | scaffold_19:347832..350756 |
| Strand | - |
| Gene length (bp) | 2924 |
| Transcript length (bp) | 2817 |
| Coding sequence length (bp) | 2817 |
| Protein length (aa) | 939 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00982 | Glyco_transf_20 | Glycosyltransferase family 20 | 1.6E-149 | 241 | 651 |
| PF02358 | Trehalose_PPase | Trehalose-phosphatase | 1.0E-86 | 685 | 920 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003824 | catalytic activity | Yes |
| GO:0005992 | trehalose biosynthetic process | Yes |
| GO:0009058 | biosynthetic process | No |
| GO:0046351 | disaccharide biosynthetic process | No |
| GO:0008150 | biological_process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0016051 | carbohydrate biosynthetic process | No |
| GO:0009311 | oligosaccharide metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0044262 | cellular carbohydrate metabolic process | No |
| GO:0034637 | cellular carbohydrate biosynthetic process | No |
| GO:0005991 | trehalose metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0005975 | carbohydrate metabolic process | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0005984 | disaccharide metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0009312 | oligosaccharide biosynthetic process | No |
| GO:0009987 | cellular process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 116.93 | 69.74 | 164.12 |
| 5d_25C | Five days - 25 degrees Celsius | 112.59 | 67.08 | 158.11 |
| 7d_25C | Seven days - 25 degrees Celsius | 118.51 | 70.85 | 166.18 |
| 10d_25C | Ten days - 25 degrees Celsius | 115.63 | 69.05 | 162.21 |
| 7d_15C | Seven days - 15 degrees Celsius | 131.80 | 78.30 | 185.31 |
| 7d_30C | Seven days - 30 degrees Celsius | 85.71 | 51.62 | 119.81 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.910630 | no |
| 3d_25C | 7d_25C | 0.970049 | no |
| 3d_25C | 7d_15C | 0.677236 | no |
| 3d_25C | 7d_30C | 0.177394 | no |
| 3d_25C | 10d_25C | 0.975427 | no |
| 5d_25C | 7d_25C | 0.877126 | no |
| 5d_25C | 7d_15C | 0.561253 | no |
| 5d_25C | 7d_30C | 0.251689 | no |
| 5d_25C | 10d_25C | 0.939418 | no |
| 7d_25C | 7d_15C | 0.714961 | no |
| 7d_25C | 7d_30C | 0.154330 | no |
| 7d_25C | 10d_25C | 0.943742 | no |
| 7d_15C | 7d_30C | 0.050897 | no |
| 7d_15C | 10d_25C | 0.642914 | no |
| 7d_30C | 10d_25C | 0.200076 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6912.t1 MSESESPAQVPDDQPNPVLVGPGLKALKNDAYTQATNATPSLEKTSSEAPSYFNNLPRANAVTADPSETKSEPVQ TAERASSGIDLLRRLSLTAESPETDPRLEHPGLRLSGRLISAAFCIPYKLSFRSGSDWTLKSRSGTSALFDSFAH LASDETSWSHTLVGWTGEVEPDVDMKAPLQQIHPNSVVAPLTPSNLVANQALNKAAAPVPVDGTKKPPAHPLVEG ISVTQQDRERLDEQLSSGRHGRVLPVWLSDASEEPEETIMLKDQGRWRRYAERELYPLLHYKQHGPTDGRSERRW WADYLRLNQLFADRIVQEYQEGDVVWVHDYHLFLLPSLLRQRIPNIYVGFFLHSPFPSSEFVRCLAKRKEILEGV LGANMIGFQTFSYSRHFTSCCTRVLGFESNSAGVDAYGAHVAVDVFPIGIDARSIQKAAFGAPDIEKTVLGIRKL YAGKKIIVGRDRLDSVRGVAQKLQAFEIFLERYPEWRDKVVLIQVTSPTSVEEEKEDDNKIAGQISNLVSTINGR FGSLSFSPVQYYPQYLSPREYFALLRVADVGLITTVRDGMNTTSLEYIVCQQTNHSPLILSEFSGTAGTLPSAIH INPWDLVGVAGAINQALTMPADQRKEQHLQLYKHVVTNTVSMWSRQFLNRLLTNLSSFDQSVATPALDRAKLMKQ YRKARRRLFMFDYDGTLTPIVKDPQAAIPSDRVLRTLKSLSADPRNAVWIISGRDQAFLDEWMGHIPELGLSAEH GCFIRKPGSEDWENLAEKSDMGWQKEVVDVFQHYTERTQGSFIERKRVALTWHYRRADPEYGAFQARECRKALED TVAKRWDVEVMAGKANLEVRPTFVNKGFIATRLVDEYGTAPGKAPDFILCLGDDFTDEDMFRALKKFDLPRDHVY SVTVGASSKQTDASWHLLEPADVIGSIQMLFSSANQDH* |
| Coding | >Pro_DTO377G3_2|g6912.t1 ATGTCTGAATCAGAGAGCCCCGCGCAGGTGCCCGATGACCAGCCAAACCCCGTCCTCGTTGGGCCCGGATTAAAG GCTCTCAAAAATGACGCGTACACTCAAGCGACAAATGCGACACCCAGTCTGGAGAAGACGTCGAGCGAGGCCCCT TCATACTTTAACAATCTCCCCAGGGCCAACGCTGTAACCGCCGACCCGTCTGAGACTAAGTCAGAGCCAGTGCAG ACTGCAGAGAGAGCATCATCCGGCATAGATTTGCTGCGCCGCTTAAGCTTGACCGCTGAATCTCCCGAGACTGAT CCACGCCTAGAACACCCAGGACTTCGCTTGAGTGGCCGTCTCATCAGTGCCGCTTTCTGCATACCATACAAGCTC AGCTTTCGATCGGGATCAGACTGGACGCTCAAATCGCGCTCCGGTACTTCGGCGCTGTTCGATTCATTTGCACAT CTTGCATCTGATGAGACATCTTGGTCTCACACCTTAGTAGGCTGGACCGGAGAGGTCGAGCCTGATGTGGACATG AAAGCACCCTTGCAGCAAATACATCCCAATTCTGTAGTCGCACCTCTAACCCCCAGTAACCTTGTTGCCAACCAA GCATTGAACAAGGCTGCCGCACCGGTTCCCGTGGACGGAACCAAGAAGCCACCCGCTCATCCGCTGGTAGAGGGA ATTAGTGTCACCCAACAGGACCGAGAACGACTCGATGAACAATTGAGCTCAGGCCGTCATGGCCGGGTATTGCCT GTGTGGTTGTCGGATGCATCAGAAGAACCAGAAGAGACTATTATGCTGAAAGACCAAGGGAGATGGCGCCGTTAT GCCGAACGTGAGTTATATCCTCTACTCCACTACAAGCAACATGGCCCGACAGATGGCCGATCCGAGCGACGGTGG TGGGCCGACTACCTGCGCCTGAACCAATTGTTTGCGGATCGCATTGTGCAGGAATATCAAGAAGGAGACGTGGTC TGGGTCCATGATTATCATTTATTTCTTCTACCCAGTCTGCTGCGGCAACGTATCCCGAATATCTACGTGGGATTC TTCTTACATTCGCCTTTTCCAAGCAGCGAATTCGTCCGGTGTCTTGCAAAGCGCAAGGAGATCCTGGAGGGAGTC CTGGGTGCCAACATGATTGGATTCCAAACATTTTCCTATTCTCGACACTTTACCTCGTGCTGCACACGTGTTTTG GGCTTTGAGTCCAACTCCGCCGGGGTGGATGCCTACGGCGCCCATGTTGCAGTAGATGTCTTTCCTATTGGCATC GACGCACGTTCAATTCAAAAAGCCGCCTTTGGGGCTCCGGATATCGAGAAGACTGTGTTGGGCATTCGCAAGCTC TACGCTGGAAAGAAAATCATCGTCGGCCGCGATCGACTCGACAGTGTTCGCGGCGTCGCGCAGAAGCTACAGGCA TTCGAGATTTTCCTGGAGCGCTACCCGGAATGGCGTGACAAAGTCGTCCTCATCCAGGTGACCAGTCCAACTAGC GTGGAAGAGGAGAAGGAAGACGACAACAAGATTGCTGGCCAAATATCCAATTTGGTTTCGACCATCAACGGAAGA TTTGGCTCTTTGAGTTTCTCGCCCGTGCAGTACTATCCGCAATACTTATCTCCACGCGAGTATTTCGCTCTGTTG CGTGTAGCCGATGTCGGCTTGATCACTACGGTGCGAGATGGCATGAACACAACGAGTCTGGAATATATTGTCTGT CAACAAACCAACCACAGCCCTTTGATTCTTTCCGAATTCTCCGGAACGGCGGGCACCCTGCCTAGTGCCATCCAC ATCAACCCGTGGGATCTAGTCGGGGTGGCTGGAGCGATCAATCAAGCATTGACTATGCCAGCCGACCAGCGAAAG GAGCAACACCTCCAGTTATACAAGCATGTGGTGACCAACACAGTTTCCATGTGGTCCAGGCAATTCCTCAATCGC CTACTGACCAACCTTTCGTCCTTTGACCAATCCGTCGCTACACCTGCACTCGATCGCGCAAAACTAATGAAGCAG TACCGCAAGGCTCGCCGACGACTGTTCATGTTCGACTACGATGGCACATTGACACCAATTGTCAAGGATCCCCAG GCAGCCATTCCTTCAGATCGGGTACTCCGTACTCTGAAGAGCCTATCGGCTGACCCACGAAATGCCGTGTGGATT ATCAGTGGACGGGACCAGGCTTTCCTGGACGAGTGGATGGGCCATATCCCAGAACTAGGATTGAGTGCCGAGCAC GGTTGTTTTATCCGAAAGCCCGGATCTGAGGATTGGGAGAATTTAGCCGAGAAAAGCGACATGGGATGGCAGAAA GAAGTGGTTGATGTCTTCCAACATTACACAGAGCGAACACAAGGTTCATTCATTGAACGGAAACGGGTAGCATTG ACCTGGCACTATCGTCGTGCAGACCCAGAGTACGGTGCGTTCCAGGCTCGCGAGTGTCGAAAGGCTTTGGAGGAC ACTGTCGCCAAACGATGGGATGTGGAAGTCATGGCAGGCAAGGCCAATCTAGAGGTCCGGCCAACCTTTGTGAAC AAGGGATTTATCGCCACCCGGTTGGTTGACGAATATGGCACGGCCCCGGGGAAGGCACCGGACTTCATCCTATGT TTGGGTGATGACTTCACCGATGAAGATATGTTCCGAGCCCTCAAGAAGTTTGATCTACCACGCGACCACGTTTAC TCAGTTACGGTGGGCGCCAGCTCAAAGCAGACCGATGCCAGCTGGCACTTATTGGAACCGGCCGATGTTATTGGG TCAATTCAAATGCTTTTTAGCAGCGCCAACCAAGATCACTGA |
| Transcript | >Pro_DTO377G3_2|g6912.t1 ATGTCTGAATCAGAGAGCCCCGCGCAGGTGCCCGATGACCAGCCAAACCCCGTCCTCGTTGGGCCCGGATTAAAG GCTCTCAAAAATGACGCGTACACTCAAGCGACAAATGCGACACCCAGTCTGGAGAAGACGTCGAGCGAGGCCCCT TCATACTTTAACAATCTCCCCAGGGCCAACGCTGTAACCGCCGACCCGTCTGAGACTAAGTCAGAGCCAGTGCAG ACTGCAGAGAGAGCATCATCCGGCATAGATTTGCTGCGCCGCTTAAGCTTGACCGCTGAATCTCCCGAGACTGAT CCACGCCTAGAACACCCAGGACTTCGCTTGAGTGGCCGTCTCATCAGTGCCGCTTTCTGCATACCATACAAGCTC AGCTTTCGATCGGGATCAGACTGGACGCTCAAATCGCGCTCCGGTACTTCGGCGCTGTTCGATTCATTTGCACAT CTTGCATCTGATGAGACATCTTGGTCTCACACCTTAGTAGGCTGGACCGGAGAGGTCGAGCCTGATGTGGACATG AAAGCACCCTTGCAGCAAATACATCCCAATTCTGTAGTCGCACCTCTAACCCCCAGTAACCTTGTTGCCAACCAA GCATTGAACAAGGCTGCCGCACCGGTTCCCGTGGACGGAACCAAGAAGCCACCCGCTCATCCGCTGGTAGAGGGA ATTAGTGTCACCCAACAGGACCGAGAACGACTCGATGAACAATTGAGCTCAGGCCGTCATGGCCGGGTATTGCCT GTGTGGTTGTCGGATGCATCAGAAGAACCAGAAGAGACTATTATGCTGAAAGACCAAGGGAGATGGCGCCGTTAT GCCGAACGTGAGTTATATCCTCTACTCCACTACAAGCAACATGGCCCGACAGATGGCCGATCCGAGCGACGGTGG TGGGCCGACTACCTGCGCCTGAACCAATTGTTTGCGGATCGCATTGTGCAGGAATATCAAGAAGGAGACGTGGTC TGGGTCCATGATTATCATTTATTTCTTCTACCCAGTCTGCTGCGGCAACGTATCCCGAATATCTACGTGGGATTC TTCTTACATTCGCCTTTTCCAAGCAGCGAATTCGTCCGGTGTCTTGCAAAGCGCAAGGAGATCCTGGAGGGAGTC CTGGGTGCCAACATGATTGGATTCCAAACATTTTCCTATTCTCGACACTTTACCTCGTGCTGCACACGTGTTTTG GGCTTTGAGTCCAACTCCGCCGGGGTGGATGCCTACGGCGCCCATGTTGCAGTAGATGTCTTTCCTATTGGCATC GACGCACGTTCAATTCAAAAAGCCGCCTTTGGGGCTCCGGATATCGAGAAGACTGTGTTGGGCATTCGCAAGCTC TACGCTGGAAAGAAAATCATCGTCGGCCGCGATCGACTCGACAGTGTTCGCGGCGTCGCGCAGAAGCTACAGGCA TTCGAGATTTTCCTGGAGCGCTACCCGGAATGGCGTGACAAAGTCGTCCTCATCCAGGTGACCAGTCCAACTAGC GTGGAAGAGGAGAAGGAAGACGACAACAAGATTGCTGGCCAAATATCCAATTTGGTTTCGACCATCAACGGAAGA TTTGGCTCTTTGAGTTTCTCGCCCGTGCAGTACTATCCGCAATACTTATCTCCACGCGAGTATTTCGCTCTGTTG CGTGTAGCCGATGTCGGCTTGATCACTACGGTGCGAGATGGCATGAACACAACGAGTCTGGAATATATTGTCTGT CAACAAACCAACCACAGCCCTTTGATTCTTTCCGAATTCTCCGGAACGGCGGGCACCCTGCCTAGTGCCATCCAC ATCAACCCGTGGGATCTAGTCGGGGTGGCTGGAGCGATCAATCAAGCATTGACTATGCCAGCCGACCAGCGAAAG GAGCAACACCTCCAGTTATACAAGCATGTGGTGACCAACACAGTTTCCATGTGGTCCAGGCAATTCCTCAATCGC CTACTGACCAACCTTTCGTCCTTTGACCAATCCGTCGCTACACCTGCACTCGATCGCGCAAAACTAATGAAGCAG TACCGCAAGGCTCGCCGACGACTGTTCATGTTCGACTACGATGGCACATTGACACCAATTGTCAAGGATCCCCAG GCAGCCATTCCTTCAGATCGGGTACTCCGTACTCTGAAGAGCCTATCGGCTGACCCACGAAATGCCGTGTGGATT ATCAGTGGACGGGACCAGGCTTTCCTGGACGAGTGGATGGGCCATATCCCAGAACTAGGATTGAGTGCCGAGCAC GGTTGTTTTATCCGAAAGCCCGGATCTGAGGATTGGGAGAATTTAGCCGAGAAAAGCGACATGGGATGGCAGAAA GAAGTGGTTGATGTCTTCCAACATTACACAGAGCGAACACAAGGTTCATTCATTGAACGGAAACGGGTAGCATTG ACCTGGCACTATCGTCGTGCAGACCCAGAGTACGGTGCGTTCCAGGCTCGCGAGTGTCGAAAGGCTTTGGAGGAC ACTGTCGCCAAACGATGGGATGTGGAAGTCATGGCAGGCAAGGCCAATCTAGAGGTCCGGCCAACCTTTGTGAAC AAGGGATTTATCGCCACCCGGTTGGTTGACGAATATGGCACGGCCCCGGGGAAGGCACCGGACTTCATCCTATGT TTGGGTGATGACTTCACCGATGAAGATATGTTCCGAGCCCTCAAGAAGTTTGATCTACCACGCGACCACGTTTAC TCAGTTACGGTGGGCGCCAGCTCAAAGCAGACCGATGCCAGCTGGCACTTATTGGAACCGGCCGATGTTATTGGG TCAATTCAAATGCTTTTTAGCAGCGCCAACCAAGATCACTGA |
| Gene | >Pro_DTO377G3_2|g6912.t1 ATGTCTGAATCAGAGAGCCCCGCGCAGGTGCCCGATGACCAGCCAAACCCCGTCCTCGTTGGGCCCGGATTAAAG GCTCTCAAAAATGACGCGTACACTCAAGCGACAAATGCGACACCCAGTCTGGAGAAGACGTCGAGCGAGGCCCCT TCATACTTTAACAATCTCCCCAGGGCCAACGCTGTAACCGCCGACCCGTCTGAGACTAAGTCAGAGCCAGTGCAG ACTGCAGAGAGAGCATCATCCGGCATAGATTTGCTGCGCCGCTTAAGCTTGACCGCTGAATCTCCCGAGACTGAT CCACGCCTAGAACACCCAGGACTTCGCTTGAGTGGCCGTCTCATCAGTGCCGCTTTCTGCATACCATACAAGCTC AGCTTTCGATCGGGATCAGACTGGGTACGTGGATGACTCCGTCTATTTGGGAGATCGTATTGGCTGACCGGATCA CAGACGCTCAAATCGCGCTCCGGTACTTCGGCGCTGTTCGATTCATTTGCACATCTTGCATCTGATGAGACATCT TGGTCTCACACCTTAGTAGGCTGGACCGGAGAGGTCGAGCCTGATGTGGACATGAAAGCACCCTTGCAGCAAATA CATCCCAATTCTGTAGTCGCACCTCTAACCCCCAGTAACCTTGTTGCCAACCAAGCATTGAACAAGGCTGCCGCA CCGGTTCCCGTGGACGGAACCAAGAAGCCACCCGCTCATCCGCTGGTAGAGGGAATTAGTGTCACCCAACAGGAC CGAGAACGACTCGATGAACAATTGAGCTCAGGCCGTCATGGCCGGGTATTGCCTGTGTGGTTGTCGGATGCATCA GAAGAACCAGAAGAGACTATTATGCTGAAAGACCAAGGGAGATGGCGCCGTTATGCCGAACGTGAGTTATATCCT CTACTCCACTACAAGCAACATGGCCCGACAGATGGCCGATCCGAGCGACGGTGGTGGGCCGACTACCTGCGCCTG AACCAATTGTTTGCGGATCGCATTGTGCAGGAATATCAAGAAGGAGACGTGGTCTGGGTCCATGATTATCATTTA TTTCTTCTACCCAGTCTGCTGCGGCAACGTATCCCGAATATCTACGTGGGATTCTTCTTACATTCGCCTTTTCCA AGCAGCGAATTCGTCCGGTGTCTTGCAAAGCGCAAGGAGATCCTGGAGGGAGTCCTGGGTGCCAACATGATTGGA TTCCAAACATTTTCCTATTCTCGACACTTTACCTCGTGCTGCACACGTGTTTTGGGCTTTGAGTCCAACTCCGCC GGGGTGGATGCCTACGGCGCCCATGTTGCAGTAGATGTCTTTCCTATTGGCATCGACGCACGTTCAATTCAAAAA GCCGCCTTTGGGGCTCCGGATATCGAGAAGACTGTGTTGGGCATTCGCAAGCTCTACGCTGGAAAGAAAATCATC GTCGGCCGCGATCGACTCGACAGTGTTCGCGGCGTCGCGCAGAAGCTACAGGCATTCGAGATTTTCCTGGAGCGC TACCCGGAATGGCGTGACAAAGTCGTCCTCATCCAGGTGACCAGTCCAACTAGCGTGGAAGAGGAGAAGGAAGAC GACAACAAGATTGCTGGCCAAATATCCAATTTGGTTTCGACCATCAACGGAAGATTTGGCTCTTTGAGTTTCTCG CCCGTGCAGTACTATCCGCAATACTTATCTCCACGCGAGTATTTCGCTCTGTTGCGTGTAGCCGATGTCGGCTTG ATCACTACGGTGCGAGATGGCATGAACACAACGAGTCTGGAATATATTGTCTGTCAACAAACCAACCACAGCCCT TTGATTCTTTCCGAATTCTCCGGAACGGCGGGCACCCTGCCTAGTGCCATCCACATCAACCCGTGGGATCTAGTC GGGGTGGCTGGAGCGATCAATCAAGCATTGACTATGCCAGCCGACCAGCGAAAGGAGCAACACCTCCAGTTATAC AAGCATGTGGTGACCAACACAGTTTCCATGTGGTCCAGGCAATTCCTCAATCGCCTACTGACCAACCTTTCGTCC TTTGACCAATCCGTCGCTACACCTGCACTCGATCGCGCAAAACTAATGAAGCAGTACCGCAAGGCTCGCCGACGA CTGTTCATGTTCGACTACGATGGCACATTGACACCAATTGTCAAGGATCCCCAGGCAGCCATTCCTTCAGATCGG GTACTCCGTACTCTGAAGAGCCTATCGGCTGACCCACGAAATGCCGTGTGGATTATCAGTGGACGGGACCAGGCT TTCCTGGACGAGTGGATGGGCCATATCCCAGAACTAGGATTGAGTGCCGAGCACGGTTGTTTTATCCGAAAGCCC GGATCTGAGGATTGGGAGAATTTAGCCGAGAAAAGCGACATGGGATGGCAGAAAGAAGTGGTTGATGTCTTCCAA CATTACACAGAGCGAACACAAGGTTCATTCATTGAACGGAAACGGGTAGCATTGACCTGGCACTATCGTCGTGCA GACCCAGAGTACGGTGCGTTCCAGGCTCGCGAGTGTCGAAAGGCTTTGGAGGACACTGTCGCCAAACGATGGGAT GTGGAAGTCATGGCAGGCAAGGCCAATCTAGAGGTCCGGCCAACCTTTGTGAACAAGGGATTTATCGCCACCCGG TTGGTTGACGAATATGGCACGGCCCCGGGGAAGGCACCGGACTTCATCCTATGTTTGGGTGATGACTTCACCGAT GAAGGTAAAATTGCCCACCTGATTGATGCTGAGATCCTGGATTAACATTCAATTTAGATATGTTCCGAGCCCTCA AGAAGTTTGATCTACCACGCGACCACGTTTACTCAGTTACGGTGGGCGCCAGCTCAAAGCAGACCGATGCCAGCT GGCACTTATTGGAACCGGCCGATGTTATTGGGTCAATTCAAATGCTTTTTAGCAGCGCCAACCAAGATCACTGA |