© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6887.t1 |
| Gene name | |
| Location | scaffold_19:283627..285446 |
| Strand | - |
| Gene length (bp) | 1819 |
| Transcript length (bp) | 1656 |
| Coding sequence length (bp) | 1656 |
| Protein length (aa) | 552 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00642 | zf-CCCH | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 2.5E-06 | 60 | 83 |
| PF00642 | zf-CCCH | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 6.1E-05 | 90 | 111 |
| PF18044 | zf-CCCH_4 | CCCH-type zinc finger | 3.9E-06 | 92 | 111 |
| PF14608 | zf-CCCH_2 | RNA-binding, Nab2-type zinc finger | 6.1E-03 | 63 | 82 |
| PF14608 | zf-CCCH_2 | RNA-binding, Nab2-type zinc finger | 7.0E-04 | 92 | 111 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0046872 | metal ion binding | Yes |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0043169 | cation binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 96.76 | 59.41 | 134.11 |
| 5d_25C | Five days - 25 degrees Celsius | 96.64 | 59.37 | 133.92 |
| 7d_25C | Seven days - 25 degrees Celsius | 92.39 | 56.72 | 128.06 |
| 10d_25C | Ten days - 25 degrees Celsius | 94.41 | 57.98 | 130.84 |
| 7d_15C | Seven days - 15 degrees Celsius | 96.73 | 59.19 | 134.28 |
| 7d_30C | Seven days - 30 degrees Celsius | 77.43 | 47.46 | 107.39 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.997071 | no |
| 3d_25C | 7d_25C | 0.881121 | no |
| 3d_25C | 7d_15C | 0.999235 | no |
| 3d_25C | 7d_30C | 0.335813 | no |
| 3d_25C | 10d_25C | 0.939744 | no |
| 5d_25C | 7d_25C | 0.887015 | no |
| 5d_25C | 7d_15C | 0.997772 | no |
| 5d_25C | 7d_30C | 0.337429 | no |
| 5d_25C | 10d_25C | 0.945166 | no |
| 7d_25C | 7d_15C | 0.885476 | no |
| 7d_25C | 7d_30C | 0.470605 | no |
| 7d_25C | 10d_25C | 0.949350 | no |
| 7d_15C | 7d_30C | 0.347917 | no |
| 7d_15C | 10d_25C | 0.943392 | no |
| 7d_30C | 10d_25C | 0.412583 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6887.t1 MQVSSRAPPSRRANHSEMRGRAPLPATSGAPQNPQNGHSRNPSALDVARSPPNQSNKNTKHVPCKFFRQGACQAG PACPFLHSTDAGIDYAPCKYFAKGNCKFGAKCALAHILPDGRRVNRPTGNMGIGSGHLNLGGRVNPQAYVNQDSA LTNSVLSQQRMNGHEQPRYAQLAPQEEYESLHGQQQPSYDGIPTIDTGLASDAGSKYGSPAEDVRYLMSPNNNHL SALDAGLPASFDSQGISHAARYGPVAASMPSQFGLESPPPQRPAHADIFRNLGDLGYGTSLRKPSSNIGSSPPAP EDTVGTRFMHSSRPVRPRMFSASVPRPTALEEWDENFPMEEDYLPFNLHDDVLTPQEKLRRLSRTDNDLSSSHRD LTGLGMTSTSFSKNGSPLASSPSRFGALFAKQRQRKEEESHGSSSFHIGSPLRESSLNPITSPSLGPIGSSRVSH EASFISSPGRQSSMSIISEQLSGMGLHPGSARPSPAIPSSLSNPTPIGPTPIGRFDRIISPPVNTGKIEEEEQSD LVFDMEEEVGHKRTSASWTENKESSS* |
| Coding | >Pro_DTO377G3_2|g6887.t1 ATGCAGGTGTCTTCTCGTGCTCCGCCATCTCGTCGAGCCAATCATTCAGAGATGAGAGGTCGTGCGCCTCTTCCG GCTACCTCTGGGGCACCCCAGAACCCCCAGAACGGACATTCTCGCAATCCATCGGCACTTGACGTTGCCCGCAGC CCGCCGAACCAGAGCAATAAGAACACCAAACATGTTCCTTGCAAATTTTTCCGCCAGGGTGCCTGCCAGGCAGGT CCCGCCTGTCCGTTTTTACACTCCACCGATGCCGGCATTGATTACGCTCCGTGCAAGTATTTTGCAAAGGGAAAC TGCAAATTCGGCGCAAAATGCGCACTGGCGCATATCCTACCAGATGGACGGAGAGTCAACCGGCCGACTGGGAAC ATGGGAATAGGAAGCGGTCATCTCAATCTGGGCGGCCGGGTGAATCCGCAGGCCTATGTCAACCAGGACTCCGCC TTGACCAACTCGGTGCTCTCCCAACAGCGCATGAACGGTCACGAGCAGCCTCGATATGCTCAGCTGGCCCCACAG GAGGAGTATGAATCCCTGCATGGGCAGCAACAGCCGTCCTATGATGGAATCCCCACGATCGATACGGGCCTGGCA TCCGATGCCGGCTCCAAGTATGGATCTCCCGCTGAAGATGTCCGATACCTCATGTCGCCTAATAACAACCACCTC AGCGCCCTCGATGCAGGGCTCCCGGCTTCCTTCGACAGTCAAGGTATCTCTCATGCTGCCCGTTACGGTCCGGTG GCTGCTTCCATGCCCTCGCAATTTGGATTGGAATCGCCACCACCCCAGAGACCGGCTCATGCAGATATATTCCGG AACCTGGGCGATCTCGGCTATGGCACCAGTTTGCGCAAGCCTTCATCGAACATAGGATCTTCTCCTCCCGCCCCT GAAGATACAGTCGGTACCCGGTTCATGCACTCGTCGCGCCCCGTCAGGCCACGCATGTTTTCCGCTAGTGTTCCT CGTCCCACGGCCCTTGAGGAATGGGATGAGAACTTCCCCATGGAAGAGGATTACCTACCATTCAATCTGCACGAC GATGTTCTGACTCCACAGGAAAAGCTGCGCCGCCTCTCCCGGACCGATAACGACCTCAGCTCCAGCCACCGCGAC CTCACTGGCCTTGGCATGACCAGCACCAGCTTTTCCAAGAATGGTTCTCCCCTGGCGTCGAGCCCGTCTCGCTTT GGTGCATTGTTTGCTAAGCAGCGCCAGCGCAAGGAAGAGGAATCTCACGGCTCTTCCTCTTTCCACATCGGCTCT CCTCTCCGTGAGTCATCACTGAACCCAATCACCAGCCCTAGCCTGGGACCCATTGGTAGTAGCCGGGTATCCCAC GAAGCGTCGTTCATCTCGAGCCCTGGACGTCAATCCTCAATGTCCATTATCTCCGAGCAGCTCAGCGGCATGGGC CTTCACCCTGGTTCTGCTCGTCCGTCGCCTGCCATTCCTAGCAGTCTCAGCAATCCTACCCCTATCGGTCCTACT CCTATCGGCCGATTTGACCGAATCATCTCCCCTCCTGTCAACACAGGCAAGATTGAGGAGGAAGAGCAGAGTGAC CTGGTCTTCGACATGGAGGAAGAGGTCGGCCACAAGCGGACCAGTGCCTCGTGGACTGAGAACAAAGAAAGTTCC TCCTAA |
| Transcript | >Pro_DTO377G3_2|g6887.t1 ATGCAGGTGTCTTCTCGTGCTCCGCCATCTCGTCGAGCCAATCATTCAGAGATGAGAGGTCGTGCGCCTCTTCCG GCTACCTCTGGGGCACCCCAGAACCCCCAGAACGGACATTCTCGCAATCCATCGGCACTTGACGTTGCCCGCAGC CCGCCGAACCAGAGCAATAAGAACACCAAACATGTTCCTTGCAAATTTTTCCGCCAGGGTGCCTGCCAGGCAGGT CCCGCCTGTCCGTTTTTACACTCCACCGATGCCGGCATTGATTACGCTCCGTGCAAGTATTTTGCAAAGGGAAAC TGCAAATTCGGCGCAAAATGCGCACTGGCGCATATCCTACCAGATGGACGGAGAGTCAACCGGCCGACTGGGAAC ATGGGAATAGGAAGCGGTCATCTCAATCTGGGCGGCCGGGTGAATCCGCAGGCCTATGTCAACCAGGACTCCGCC TTGACCAACTCGGTGCTCTCCCAACAGCGCATGAACGGTCACGAGCAGCCTCGATATGCTCAGCTGGCCCCACAG GAGGAGTATGAATCCCTGCATGGGCAGCAACAGCCGTCCTATGATGGAATCCCCACGATCGATACGGGCCTGGCA TCCGATGCCGGCTCCAAGTATGGATCTCCCGCTGAAGATGTCCGATACCTCATGTCGCCTAATAACAACCACCTC AGCGCCCTCGATGCAGGGCTCCCGGCTTCCTTCGACAGTCAAGGTATCTCTCATGCTGCCCGTTACGGTCCGGTG GCTGCTTCCATGCCCTCGCAATTTGGATTGGAATCGCCACCACCCCAGAGACCGGCTCATGCAGATATATTCCGG AACCTGGGCGATCTCGGCTATGGCACCAGTTTGCGCAAGCCTTCATCGAACATAGGATCTTCTCCTCCCGCCCCT GAAGATACAGTCGGTACCCGGTTCATGCACTCGTCGCGCCCCGTCAGGCCACGCATGTTTTCCGCTAGTGTTCCT CGTCCCACGGCCCTTGAGGAATGGGATGAGAACTTCCCCATGGAAGAGGATTACCTACCATTCAATCTGCACGAC GATGTTCTGACTCCACAGGAAAAGCTGCGCCGCCTCTCCCGGACCGATAACGACCTCAGCTCCAGCCACCGCGAC CTCACTGGCCTTGGCATGACCAGCACCAGCTTTTCCAAGAATGGTTCTCCCCTGGCGTCGAGCCCGTCTCGCTTT GGTGCATTGTTTGCTAAGCAGCGCCAGCGCAAGGAAGAGGAATCTCACGGCTCTTCCTCTTTCCACATCGGCTCT CCTCTCCGTGAGTCATCACTGAACCCAATCACCAGCCCTAGCCTGGGACCCATTGGTAGTAGCCGGGTATCCCAC GAAGCGTCGTTCATCTCGAGCCCTGGACGTCAATCCTCAATGTCCATTATCTCCGAGCAGCTCAGCGGCATGGGC CTTCACCCTGGTTCTGCTCGTCCGTCGCCTGCCATTCCTAGCAGTCTCAGCAATCCTACCCCTATCGGTCCTACT CCTATCGGCCGATTTGACCGAATCATCTCCCCTCCTGTCAACACAGGCAAGATTGAGGAGGAAGAGCAGAGTGAC CTGGTCTTCGACATGGAGGAAGAGGTCGGCCACAAGCGGACCAGTGCCTCGTGGACTGAGAACAAAGAAAGTTCC TCCTAA |
| Gene | >Pro_DTO377G3_2|g6887.t1 ATGCAGGTGTCTTCTCGTGCTCCGCCATCTCGTCGAGCCAATCATTCAGAGATGAGAGGTCGTGCGCCTCTTCCG GCTACCTCTGGGGCACCCCAGAACCCCCAGAACGGACATTCTCGCAATCCATCGGCACTTGACGTTGCCCGCAGC CCGCCGAACCAGAGCAATAAGAGTAAGTCTTGACTTGATTCATTCATATTATTGTAGCGACGCCCGAATGCGAAA CTAACCCTCTGCTATCATATATACAGACACCAAACATGTTCCTTGCAAATTTTTCCGCCAGGGTGCCTGCCAGGC AGGTCCCGCCTGTCCGTTTTTACACTCCACCGATGCCGGCATTGATTACGCTCCGTGCAAGTATTTTGCAAAGGT ATGAAATCGGAACTGTTTCGAAGTCCTCCTCTCATGGCGTGTTATCCGAGGCCATCGGAAGCTAACGGGGCAATG ATTTTAGGGAAACTGCAAATTCGGCGCAAAATGCGCACTGGCGCATATCCTACCAGATGGACGGAGAGTCAACCG GCCGACTGGGAACATGGGAATAGGAAGCGGTCATCTCAATCTGGGCGGCCGGGTGAATCCGCAGGCCTATGTCAA CCAGGACTCCGCCTTGACCAACTCGGTGCTCTCCCAACAGCGCATGAACGGTCACGAGCAGCCTCGATATGCTCA GCTGGCCCCACAGGAGGAGTATGAATCCCTGCATGGGCAGCAACAGCCGTCCTATGATGGAATCCCCACGATCGA TACGGGCCTGGCATCCGATGCCGGCTCCAAGTATGGATCTCCCGCTGAAGATGTCCGATACCTCATGTCGCCTAA TAACAACCACCTCAGCGCCCTCGATGCAGGGCTCCCGGCTTCCTTCGACAGTCAAGGTATCTCTCATGCTGCCCG TTACGGTCCGGTGGCTGCTTCCATGCCCTCGCAATTTGGATTGGAATCGCCACCACCCCAGAGACCGGCTCATGC AGATATATTCCGGAACCTGGGCGATCTCGGCTATGGCACCAGTTTGCGCAAGCCTTCATCGAACATAGGATCTTC TCCTCCCGCCCCTGAAGATACAGTCGGTACCCGGTTCATGCACTCGTCGCGCCCCGTCAGGCCACGCATGTTTTC CGCTAGTGTTCCTCGTCCCACGGCCCTTGAGGAATGGGATGAGAACTTCCCCATGGAAGAGGATTACCTACCATT CAATCTGCACGACGATGTTCTGACTCCACAGGAAAAGCTGCGCCGCCTCTCCCGGACCGATAACGACCTCAGCTC CAGCCACCGCGACCTCACTGGCCTTGGCATGACCAGCACCAGCTTTTCCAAGAATGGTTCTCCCCTGGCGTCGAG CCCGTCTCGCTTTGGTGCATTGTTTGCTAAGCAGCGCCAGCGCAAGGAAGAGGAATCTCACGGCTCTTCCTCTTT CCACATCGGCTCTCCTCTCCGTGAGTCATCACTGAACCCAATCACCAGCCCTAGCCTGGGACCCATTGGTAGTAG CCGGGTATCCCACGAAGCGTCGTTCATCTCGAGCCCTGGACGTCAATCCTCAATGTCCATTATCTCCGAGCAGCT CAGCGGCATGGGCCTTCACCCTGGTTCTGCTCGTCCGTCGCCTGCCATTCCTAGCAGTCTCAGCAATCCTACCCC TATCGGTCCTACTCCTATCGGCCGATTTGACCGAATCATCTCCCCTCCTGTCAACACAGGCAAGATTGAGGAGGA AGAGCAGAGTGACCTGGTCTTCGACATGGAGGAAGAGGTCGGCCACAAGCGGACCAGTGCCTCGTGGACTGAGAA CAAAGAAAGTTCCTCCTAA |