© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6876.t1 |
| Gene name | |
| Location | scaffold_19:253606..254713 |
| Strand | + |
| Gene length (bp) | 1107 |
| Transcript length (bp) | 1107 |
| Coding sequence length (bp) | 1107 |
| Protein length (aa) | 369 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.7E-08 | 76 | 152 |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9.6E-14 | 187 | 244 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 54 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 21.97 | 10.50 | 33.44 |
| 5d_25C | Five days - 25 degrees Celsius | 12.82 | 5.21 | 20.43 |
| 7d_25C | Seven days - 25 degrees Celsius | 11.54 | 4.45 | 18.63 |
| 10d_25C | Ten days - 25 degrees Celsius | 5.94 | 1.63 | 10.24 |
| 7d_15C | Seven days - 15 degrees Celsius | 12.06 | 4.74 | 19.38 |
| 7d_30C | Seven days - 30 degrees Celsius | 10.56 | 3.88 | 17.25 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.077004 | no |
| 3d_25C | 7d_25C | 0.031751 | yes |
| 3d_25C | 7d_15C | 0.058634 | no |
| 3d_25C | 7d_30C | 0.019090 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.821694 | no |
| 5d_25C | 7d_15C | 0.907013 | no |
| 5d_25C | 7d_30C | 0.654388 | no |
| 5d_25C | 10d_25C | 0.038184 | yes |
| 7d_25C | 7d_15C | 0.933752 | no |
| 7d_25C | 7d_30C | 0.863505 | no |
| 7d_25C | 10d_25C | 0.078462 | no |
| 7d_15C | 7d_30C | 0.781792 | no |
| 7d_15C | 10d_25C | 0.058466 | no |
| 7d_30C | 10d_25C | 0.140903 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6876.t1 MSELTEVSQKKRKLQDGPELEIDVSAPEPVSKKALRKAKKNKGGDAGDEEKPKSSKSSKPESKEAESDGKRSKYG IWIGNLSFSVTSEELRMFFTVNADISESNITRIHLPKGPERFGRSQNKGFAYVDFTDKKSLQEAIGLSEQLMTGR RVLIKDANNYEGRPDKSEAQANAAGAAKSGHPPSKRIFVGNLSFDVTKENLEENFAKCGTVNNVHMATFQDTGKC KGYAWVEFEELAAAEAAVRGFMLIKQDDEEEDSSDSDSDSASEKKKSKKLKPRVQRVWVNQLMGRRMRMEFAEDA GTRYKKRFGKDAEKKDEPAITEVDGESRERPRHKKRRESIDESRYSKETVQKLSGAIVEGQGQKITFD* |
| Coding | >Pro_DTO377G3_2|g6876.t1 ATGTCGGAACTCACCGAAGTCAGTCAAAAGAAGCGCAAGCTGCAGGACGGTCCTGAGCTTGAAATCGATGTCTCT GCACCCGAGCCAGTCTCAAAAAAGGCGCTGCGCAAAGCGAAAAAGAACAAAGGAGGCGATGCGGGTGATGAGGAG AAACCCAAGTCCAGCAAATCTAGCAAACCCGAGTCTAAAGAAGCTGAATCAGACGGGAAGCGGTCCAAATATGGT ATCTGGATTGGAAACCTATCGTTTTCAGTGACCAGTGAAGAGCTGCGCATGTTCTTCACCGTCAACGCTGATATC TCCGAGTCAAATATCACCCGAATTCATCTGCCTAAGGGCCCCGAAAGATTTGGGAGGTCGCAGAACAAGGGCTTT GCTTATGTTGACTTCACCGACAAGAAGTCTTTGCAAGAAGCAATTGGCCTAAGCGAACAGCTCATGACCGGCCGC CGCGTGCTTATCAAAGATGCAAACAATTATGAAGGTCGCCCAGACAAATCCGAAGCCCAGGCGAATGCCGCGGGT GCAGCCAAGTCTGGCCACCCTCCCTCCAAGCGAATCTTTGTCGGCAATCTCAGCTTCGATGTGACCAAGGAAAAC CTCGAGGAAAACTTCGCCAAATGTGGGACTGTTAACAACGTGCATATGGCGACTTTCCAAGACACAGGAAAATGC AAAGGTTATGCGTGGGTGGAGTTTGAAGAACTCGCTGCCGCAGAAGCCGCGGTGAGGGGATTCATGTTGATCAAG CAGGATGACGAGGAAGAGGATTCCTCTGACAGTGATTCTGACTCGGCCTCTGAGAAGAAGAAGTCGAAGAAGCTA AAACCCCGCGTGCAACGGGTTTGGGTGAACCAGCTCATGGGTCGCCGTATGCGAATGGAGTTTGCCGAAGATGCG GGTACACGATACAAGAAGCGCTTCGGAAAGGATGCCGAGAAGAAGGATGAACCTGCTATCACCGAAGTCGATGGC GAATCACGAGAAAGACCCCGACACAAGAAGAGACGTGAATCCATCGATGAGTCTCGCTACTCGAAGGAAACCGTC CAGAAGCTCAGTGGTGCCATTGTCGAGGGCCAAGGTCAGAAAATCACGTTTGACTAA |
| Transcript | >Pro_DTO377G3_2|g6876.t1 ATGTCGGAACTCACCGAAGTCAGTCAAAAGAAGCGCAAGCTGCAGGACGGTCCTGAGCTTGAAATCGATGTCTCT GCACCCGAGCCAGTCTCAAAAAAGGCGCTGCGCAAAGCGAAAAAGAACAAAGGAGGCGATGCGGGTGATGAGGAG AAACCCAAGTCCAGCAAATCTAGCAAACCCGAGTCTAAAGAAGCTGAATCAGACGGGAAGCGGTCCAAATATGGT ATCTGGATTGGAAACCTATCGTTTTCAGTGACCAGTGAAGAGCTGCGCATGTTCTTCACCGTCAACGCTGATATC TCCGAGTCAAATATCACCCGAATTCATCTGCCTAAGGGCCCCGAAAGATTTGGGAGGTCGCAGAACAAGGGCTTT GCTTATGTTGACTTCACCGACAAGAAGTCTTTGCAAGAAGCAATTGGCCTAAGCGAACAGCTCATGACCGGCCGC CGCGTGCTTATCAAAGATGCAAACAATTATGAAGGTCGCCCAGACAAATCCGAAGCCCAGGCGAATGCCGCGGGT GCAGCCAAGTCTGGCCACCCTCCCTCCAAGCGAATCTTTGTCGGCAATCTCAGCTTCGATGTGACCAAGGAAAAC CTCGAGGAAAACTTCGCCAAATGTGGGACTGTTAACAACGTGCATATGGCGACTTTCCAAGACACAGGAAAATGC AAAGGTTATGCGTGGGTGGAGTTTGAAGAACTCGCTGCCGCAGAAGCCGCGGTGAGGGGATTCATGTTGATCAAG CAGGATGACGAGGAAGAGGATTCCTCTGACAGTGATTCTGACTCGGCCTCTGAGAAGAAGAAGTCGAAGAAGCTA AAACCCCGCGTGCAACGGGTTTGGGTGAACCAGCTCATGGGTCGCCGTATGCGAATGGAGTTTGCCGAAGATGCG GGTACACGATACAAGAAGCGCTTCGGAAAGGATGCCGAGAAGAAGGATGAACCTGCTATCACCGAAGTCGATGGC GAATCACGAGAAAGACCCCGACACAAGAAGAGACGTGAATCCATCGATGAGTCTCGCTACTCGAAGGAAACCGTC CAGAAGCTCAGTGGTGCCATTGTCGAGGGCCAAGGTCAGAAAATCACGTTTGACTAA |
| Gene | >Pro_DTO377G3_2|g6876.t1 ATGTCGGAACTCACCGAAGTCAGTCAAAAGAAGCGCAAGCTGCAGGACGGTCCTGAGCTTGAAATCGATGTCTCT GCACCCGAGCCAGTCTCAAAAAAGGCGCTGCGCAAAGCGAAAAAGAACAAAGGAGGCGATGCGGGTGATGAGGAG AAACCCAAGTCCAGCAAATCTAGCAAACCCGAGTCTAAAGAAGCTGAATCAGACGGGAAGCGGTCCAAATATGGT ATCTGGATTGGAAACCTATCGTTTTCAGTGACCAGTGAAGAGCTGCGCATGTTCTTCACCGTCAACGCTGATATC TCCGAGTCAAATATCACCCGAATTCATCTGCCTAAGGGCCCCGAAAGATTTGGGAGGTCGCAGAACAAGGGCTTT GCTTATGTTGACTTCACCGACAAGAAGTCTTTGCAAGAAGCAATTGGCCTAAGCGAACAGCTCATGACCGGCCGC CGCGTGCTTATCAAAGATGCAAACAATTATGAAGGTCGCCCAGACAAATCCGAAGCCCAGGCGAATGCCGCGGGT GCAGCCAAGTCTGGCCACCCTCCCTCCAAGCGAATCTTTGTCGGCAATCTCAGCTTCGATGTGACCAAGGAAAAC CTCGAGGAAAACTTCGCCAAATGTGGGACTGTTAACAACGTGCATATGGCGACTTTCCAAGACACAGGAAAATGC AAAGGTTATGCGTGGGTGGAGTTTGAAGAACTCGCTGCCGCAGAAGCCGCGGTGAGGGGATTCATGTTGATCAAG CAGGATGACGAGGAAGAGGATTCCTCTGACAGTGATTCTGACTCGGCCTCTGAGAAGAAGAAGTCGAAGAAGCTA AAACCCCGCGTGCAACGGGTTTGGGTGAACCAGCTCATGGGTCGCCGTATGCGAATGGAGTTTGCCGAAGATGCG GGTACACGATACAAGAAGCGCTTCGGAAAGGATGCCGAGAAGAAGGATGAACCTGCTATCACCGAAGTCGATGGC GAATCACGAGAAAGACCCCGACACAAGAAGAGACGTGAATCCATCGATGAGTCTCGCTACTCGAAGGAAACCGTC CAGAAGCTCAGTGGTGCCATTGTCGAGGGCCAAGGTCAGAAAATCACGTTTGACTAA |