© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6834.t1 |
| Gene name | |
| Location | scaffold_19:134511..135320 |
| Strand | - |
| Gene length (bp) | 809 |
| Transcript length (bp) | 438 |
| Coding sequence length (bp) | 438 |
| Protein length (aa) | 146 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 46 | 65 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 1506.63 | 905.40 | 2107.85 |
| 5d_25C | Five days - 25 degrees Celsius | 1558.52 | 930.34 | 2186.69 |
| 7d_25C | Seven days - 25 degrees Celsius | 1489.97 | 889.18 | 2090.76 |
| 10d_25C | Ten days - 25 degrees Celsius | 1921.99 | 1117.52 | 2726.46 |
| 7d_15C | Seven days - 15 degrees Celsius | 2170.05 | 1255.56 | 3084.55 |
| 7d_30C | Seven days - 30 degrees Celsius | 864.93 | 526.89 | 1202.97 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.923592 | no |
| 3d_25C | 7d_25C | 0.975139 | no |
| 3d_25C | 7d_15C | 0.111180 | no |
| 3d_25C | 7d_30C | 0.008469 | yes |
| 3d_25C | 10d_25C | 0.335467 | no |
| 5d_25C | 7d_25C | 0.891859 | no |
| 5d_25C | 7d_15C | 0.161481 | no |
| 5d_25C | 7d_30C | 0.003625 | yes |
| 5d_25C | 10d_25C | 0.418753 | no |
| 7d_25C | 7d_15C | 0.101730 | no |
| 7d_25C | 7d_30C | 0.009446 | yes |
| 7d_25C | 10d_25C | 0.310007 | no |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.692420 | no |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6834.t1 MSSIAALATRRALTRQSLLRAPPRRFSSAKVEEGNLEKAGKRDPELYVLLGVMSGAFLIAGWYFGRKPTSVTSES NVRIGESAMPWQGQSEDGKVYKYQYHPHGDKNQPLRAAPSAMNTVIVPNVTLPEDLHERFNKYGKEEWDY* |
| Coding | >Pro_DTO377G3_2|g6834.t1 ATGTCCTCAATTGCTGCTCTGGCTACCCGCCGGGCTCTGACCCGCCAGTCCCTCCTCCGCGCTCCCCCGCGCCGC TTCAGCTCCGCCAAGGTCGAGGAGGGCAACCTCGAAAAGGCCGGCAAGCGTGATCCCGAGCTCTACGTCCTTCTC GGTGTCATGTCTGGTGCTTTCCTGATTGCCGGATGGTACTTCGGCCGCAAGCCCACCTCCGTGACCTCTGAGAGC AACGTTCGCATTGGCGAGAGTGCCATGCCCTGGCAGGGCCAGTCCGAGGATGGCAAGGTCTACAAGTACCAGTAC CACCCCCACGGCGACAAGAACCAGCCCCTCCGTGCTGCCCCCAGCGCCATGAACACTGTCATTGTTCCCAATGTC ACCCTGCCCGAGGACCTCCACGAGCGGTTCAACAAGTACGGCAAGGAGGAGTGGGACTACTAA |
| Transcript | >Pro_DTO377G3_2|g6834.t1 ATGTCCTCAATTGCTGCTCTGGCTACCCGCCGGGCTCTGACCCGCCAGTCCCTCCTCCGCGCTCCCCCGCGCCGC TTCAGCTCCGCCAAGGTCGAGGAGGGCAACCTCGAAAAGGCCGGCAAGCGTGATCCCGAGCTCTACGTCCTTCTC GGTGTCATGTCTGGTGCTTTCCTGATTGCCGGATGGTACTTCGGCCGCAAGCCCACCTCCGTGACCTCTGAGAGC AACGTTCGCATTGGCGAGAGTGCCATGCCCTGGCAGGGCCAGTCCGAGGATGGCAAGGTCTACAAGTACCAGTAC CACCCCCACGGCGACAAGAACCAGCCCCTCCGTGCTGCCCCCAGCGCCATGAACACTGTCATTGTTCCCAATGTC ACCCTGCCCGAGGACCTCCACGAGCGGTTCAACAAGTACGGCAAGGAGGAGTGGGACTACTAA |
| Gene | >Pro_DTO377G3_2|g6834.t1 ATGTCCTCAATTGCTGCTCTGGCTACCCGCCGGGCTCTGACCCGCCAGTCCCTCCTCCGCGCTCCCCCGCGCCGC TTCAGCTCCGCCAAGGTCGAGGAGGGCAACCTCGAAAAGGCCGGCAAGCGTGATCCCGAGCTCTACGTACGGATC CCACGGAGCCATTGAACCATGCTCGATCTTTCGTCCTAACTGCTGTACTTCTAGGTCCTTCTCGGTGTCATGTCT GGTGCTTTCCTGATTGCCGGATGGTGAGCATCCCTCCCGAAATTGCCCTACAATGCCTCGTCCCTGGGTCGCCCC ATTTCCGCCACTGTGACGTCGGCACCTCTTTTGGGGTTTACCTCACCTACCTATCACTCTCAATGGCGCATACAC ATACAATAATCACCACGGTCGCTAATCAGTTCGGTATTTGCGATAATATAGGTACTTCGGCCGCAAGCCCACCTC CGTGACCTCTGAGAGCAACGTTCGCATTGGCGAGAGTGCCATGCCCTGGCAGGGCCAGTCCGAGGATGGCAAGGT CTACAAGTACCAGTACCACCCCCACGGCGACAAGAACCAGCCCCTCCGTGCTGCCCCCAGCGCCATGAACACTGT CATTGTTCCCAATGTCACCCTGCCCGAGGTATGAATTCGCTGATACTTCTTATTTATGCCATACGTTGGTTGGAT CACTTCAGAACTTGTTGAAAGTGTCATGTGTGATCGCGTTGCTGTTTTGGTAGTAAATGCTGACATTAGCTTCTT TCTAATAGGACCTCCACGAGCGGTTCAACAAGTACGGCAAGGAGGAGTGGGACTACTAA |