Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g6820.t1
Gene name
Locationscaffold_19:108710..109895
Strand-
Gene length (bp)1185
Transcript length (bp)1032
Coding sequence length (bp)1032
Protein length (aa) 344

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.6E-12 182 246

GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 38 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 13.79 5.50 22.09
5d_25C Five days - 25 degrees Celsius 8.49 2.70 14.28
7d_25C Seven days - 25 degrees Celsius 8.85 2.93 14.76
10d_25C Ten days - 25 degrees Celsius 4.50 0.93 8.08
7d_15C Seven days - 15 degrees Celsius 7.98 2.57 13.40
7d_30C Seven days - 30 degrees Celsius 8.61 2.80 14.42

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.186920 no
3d_25C 7d_25C 0.231396 no
3d_25C 7d_15C 0.130858 no
3d_25C 7d_30C 0.195053 no
3d_25C 10d_25C 0.003625 yes
5d_25C 7d_25C 0.945255 no
5d_25C 7d_15C 0.917393 no
5d_25C 7d_30C 0.982279 no
5d_25C 10d_25C 0.134803 no
7d_25C 7d_15C 0.855255 no
7d_25C 7d_30C 0.966483 no
7d_25C 10d_25C 0.104340 no
7d_15C 7d_30C 0.897239 no
7d_15C 10d_25C 0.180075 no
7d_30C 10d_25C 0.122346 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g6820.t1
MGDKRKLVQDEVVEPEGKKMKKEKKDKKDKKEKKEKRKSQEESEVVAPAETAVPAQEEVKEKKEKKDKKDKSEKK
DKSEKKDKSDKKEKSDKKEKSEKKEKRKAEETDAEPAAPSEDAMDIDVIPAEKADSDKKEKKDKKKDKKEKKQKK
EKTEPAAETEEEPTAESAEGEQAQKSSRFICFVGNLPYSANHESLSKHFEKNPPATIRVATKKEDPKKCRGFAFI
EFDNYDRMKTCLKLYHHSNFDDGKYPPRRMNVELTAGGGGAKSEHRNAKIQAKNEKLNEERQRQAKDIQKDKRKH
EKKAAPAGGSGANAANLDGAADNAGSAVNDQWAGLHPSRRGRM*
Coding >Pro_DTO377G3_2|g6820.t1
ATGGGTGATAAGCGCAAACTCGTGCAGGATGAGGTCGTCGAGCCCGAGGGCAAGAAGATGAAGAAGGAGAAGAAG
GACAAAAAAGACAAGAAGGAAAAGAAGGAAAAGCGCAAGTCGCAAGAGGAGTCCGAGGTTGTCGCTCCCGCTGAA
ACTGCTGTTCCGGCACAGGAAGAGGTGAAGGAGAAGAAAGAAAAGAAGGACAAGAAGGACAAATCTGAGAAGAAA
GATAAGTCTGAGAAGAAGGACAAGTCTGACAAGAAGGAGAAGTCCGATAAGAAGGAAAAGTCCGAGAAGAAGGAG
AAGCGCAAGGCCGAGGAGACCGACGCCGAGCCTGCTGCTCCCTCCGAGGACGCTATGGATATTGACGTGATCCCC
GCCGAGAAGGCGGACAGCGATAAGAAGGAGAAGAAAGACAAGAAGAAGGACAAGAAGGAGAAAAAGCAGAAGAAG
GAGAAGACCGAGCCCGCTGCTGAGACCGAAGAAGAGCCTACCGCTGAATCTGCGGAGGGCGAGCAAGCCCAGAAG
AGTTCCCGCTTCATCTGCTTTGTCGGCAACCTTCCCTACTCCGCCAACCATGAGTCCTTGAGCAAGCACTTTGAA
AAGAACCCCCCGGCCACAATCCGCGTCGCAACCAAGAAAGAAGACCCCAAGAAGTGCCGCGGTTTCGCATTCATC
GAGTTTGACAACTACGACCGCATGAAGACCTGTCTCAAGTTGTACCACCACTCCAACTTCGACGACGGAAAGTAC
CCACCCCGACGCATGAACGTCGAGTTGACTGCTGGTGGCGGCGGCGCCAAGTCCGAACATCGCAATGCCAAGATC
CAGGCCAAGAACGAGAAGCTCAATGAGGAGCGCCAGCGCCAGGCTAAGGATATCCAGAAGGACAAGAGGAAGCAC
GAGAAGAAGGCTGCCCCGGCTGGCGGCTCTGGTGCCAATGCTGCTAACCTGGATGGCGCAGCCGACAACGCTGGC
AGCGCTGTCAACGATCAGTGGGCTGGTCTGCACCCTAGCCGCAGAGGCCGGATGTAG
Transcript >Pro_DTO377G3_2|g6820.t1
ATGGGTGATAAGCGCAAACTCGTGCAGGATGAGGTCGTCGAGCCCGAGGGCAAGAAGATGAAGAAGGAGAAGAAG
GACAAAAAAGACAAGAAGGAAAAGAAGGAAAAGCGCAAGTCGCAAGAGGAGTCCGAGGTTGTCGCTCCCGCTGAA
ACTGCTGTTCCGGCACAGGAAGAGGTGAAGGAGAAGAAAGAAAAGAAGGACAAGAAGGACAAATCTGAGAAGAAA
GATAAGTCTGAGAAGAAGGACAAGTCTGACAAGAAGGAGAAGTCCGATAAGAAGGAAAAGTCCGAGAAGAAGGAG
AAGCGCAAGGCCGAGGAGACCGACGCCGAGCCTGCTGCTCCCTCCGAGGACGCTATGGATATTGACGTGATCCCC
GCCGAGAAGGCGGACAGCGATAAGAAGGAGAAGAAAGACAAGAAGAAGGACAAGAAGGAGAAAAAGCAGAAGAAG
GAGAAGACCGAGCCCGCTGCTGAGACCGAAGAAGAGCCTACCGCTGAATCTGCGGAGGGCGAGCAAGCCCAGAAG
AGTTCCCGCTTCATCTGCTTTGTCGGCAACCTTCCCTACTCCGCCAACCATGAGTCCTTGAGCAAGCACTTTGAA
AAGAACCCCCCGGCCACAATCCGCGTCGCAACCAAGAAAGAAGACCCCAAGAAGTGCCGCGGTTTCGCATTCATC
GAGTTTGACAACTACGACCGCATGAAGACCTGTCTCAAGTTGTACCACCACTCCAACTTCGACGACGGAAAGTAC
CCACCCCGACGCATGAACGTCGAGTTGACTGCTGGTGGCGGCGGCGCCAAGTCCGAACATCGCAATGCCAAGATC
CAGGCCAAGAACGAGAAGCTCAATGAGGAGCGCCAGCGCCAGGCTAAGGATATCCAGAAGGACAAGAGGAAGCAC
GAGAAGAAGGCTGCCCCGGCTGGCGGCTCTGGTGCCAATGCTGCTAACCTGGATGGCGCAGCCGACAACGCTGGC
AGCGCTGTCAACGATCAGTGGGCTGGTCTGCACCCTAGCCGCAGAGGCCGGATGTAG
Gene >Pro_DTO377G3_2|g6820.t1
ATGGGTGATAAGCGCAAACTCGTGCAGGATGAGGTCGTCGAGCCCGAGGGCAAGAAGATGAAGAAGGAGAAGAAG
GACAAAAAAGACAAGAAGGAAAAGAAGGAAAAGCGCAAGTCGCAAGAGGAGTCCGAGGTTGTCGCTCCCGCTGAA
ACTGCTGTTCCGGCACAGGAAGAGGTGAAGGAGAAGAAAGAAAAGAAGGACAAGAAGGACAAATCTGAGAAGAAA
GATAAGTCTGAGAAGAAGGACAAGTCTGACAAGAAGGAGAAGTCCGATAAGAAGGAAAAGTCCGAGAAGAAGGAG
AAGCGCAAGGCCGAGGAGACCGACGCCGAGCCTGCTGCTCCCTCCGAGGACGCTATGGATATTGACGTGATCCCC
GCCGAGAAGGCGGACAGCGATAAGAAGGAGAAGAAAGACAAGAAGAAGGACAAGAAGGAGAAAAAGCAGAAGAAG
GAGAAGACCGAGCCCGCTGCTGAGACCGAAGAAGAGCCTACCGCTGAATCTGCGGAGGGCGAGCAAGCCCAGAAG
AGTTCCCGCTTCATCTGCTTTGTCGGTAAGTGATTCCAATCCAGATGAACTACCCGAACCAAAGACGCAGAATTA
ACCAAAGGATATTCCTATATACAGGCAACCTTCCCTACTCCGCCAACCATGAGTCCTTGAGCAAGCACTTTGAAA
AGAACCCCCCGGCCACAATCCGCGTCGCAACCAAGAAAGAAGACCCCAAGAAGTGCCGCGGTTTCGCATTCATCG
AGTTTGACAACTACGACCGCATGAAGACCTGTCTCAAGTTGTACCACCACTCCAACTTCGACGACGGAAAGTACC
CACCCCGACGCATGAACGTCGAGTTGACGTGAGTTACCCTCAATTCGAGAATATAATTGCTCTCCAAGCAACTGC
AGTCATAGCCGCATACTAACCCTCAATTCTAGTGCTGGTGGCGGCGGCGCCAAGTCCGAACATCGCAATGCCAAG
ATCCAGGCCAAGAACGAGAAGCTCAATGAGGAGCGCCAGCGCCAGGCTAAGGATATCCAGAAGGACAAGAGGAAG
CACGAGAAGAAGGCTGCCCCGGCTGGCGGCTCTGGTGCCAATGCTGCTAACCTGGATGGCGCAGCCGACAACGCT
GGCAGCGCTGTCAACGATCAGTGGGCTGGTCTGCACCCTAGCCGCAGAGGCCGGATGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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