Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g6811.t1
Gene name
Locationscaffold_19:83256..86224
Strand+
Gene length (bp)2968
Transcript length (bp)2658
Coding sequence length (bp)2658
Protein length (aa) 886

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.2E-07 119 191

GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 28 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 0.37 0.00 0.76
5d_25C Five days - 25 degrees Celsius 0.64 0.06 1.23
7d_25C Seven days - 25 degrees Celsius 0.59 0.00 1.19
10d_25C Ten days - 25 degrees Celsius 1.40 0.30 2.51
7d_15C Seven days - 15 degrees Celsius 0.43 0.00 0.86
7d_30C Seven days - 30 degrees Celsius 1.51 0.37 2.66

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 1.000000 no
3d_25C 7d_25C 1.000000 no
3d_25C 7d_15C 1.000000 no
3d_25C 7d_30C 0.007437 yes
3d_25C 10d_25C 0.014377 yes
5d_25C 7d_25C 1.000000 no
5d_25C 7d_15C 1.000000 no
5d_25C 7d_30C 0.062457 no
5d_25C 10d_25C 0.102131 no
7d_25C 7d_15C 1.000000 no
7d_25C 7d_30C 0.069248 no
7d_25C 10d_25C 0.099307 no
7d_15C 7d_30C 0.011688 yes
7d_15C 10d_25C 0.021417 yes
7d_30C 10d_25C 0.907138 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g6811.t1
MAMHYVEQNISAPVSWYSAPEPTIIWQDPHDTGSESSAFESGSSKPSTPEQPDARSVEPFRPVETVQPVELVTPK
ETKPGDKKKPGEGNNPVYMPREDRLNQTPTKGNAQGLFLPACCVFVGNLSIKVSPEKLEEDLTEMISTFGRCHVK
IKLSQGVKKLPVGFVQFEDTKAANAALKQNGNLMLHNRVLRLESSKARRTANFGRLSDAPVEKADVVAALRGRGS
LESIAIEHFVNQDGEDSTFGVVTFAYPDDYADALQHFQNNPDYYMTRSTMDPNDQLPQDYPAGHRSSNQPPANRG
NQQRYNNTGRRPFHRPWYSGGNNNNNRGGFRNAPGPAPRQQNTSFANHGHSQSFNGQGHSSHGSFSQNYSGNGFP
QNNFNQGYPSPNPNYNQNFPGNNFHPNYQGNFPNYPNQNFVAAGPFPNAPVLFNQMQMPEGPPPPYHAEYTAMQN
PGFPVFLGNQSYQPPNTLAPMMTPVQAVAGPVPGAVPGAVPGAVPRRRRLPPRPDCPLIVSSQPQFDTEQHLQLY
YEPYPGNEPVVNMQPGWTGHTCFVQPDYNQPCPPDAYPHSRQSSMESQHNTCSPPRVNESESILTQTKFHTPEVE
RGRPLVRPRHPNTDGGFDTAPVSAPAKAQRDSSSVKPLDGSSGRASKSTDAQVEPALPMRKPIKSENKATEPETK
LNPPQPESTCGPSHDEKKKELMDEIKPPLSIDTNEESAGSSSEAGPKTPDTEQSRESAKLQTPAKAGSVKSAGSK
TPDSAETLKPADKGTSDKGKSPEVATSTPTKSGSKRLEPAVPDSKHLLARHAFQHRKPLKKKYQPKTDTGKTVEQ
YTREINAQRASVDPDSRVPEHILQEVIQELENERRENIRKSLGLGPSAKSSMDSGTSKKK*
Coding >Pro_DTO377G3_2|g6811.t1
ATGGCTATGCATTACGTTGAACAGAATATTTCTGCGCCTGTCTCTTGGTATAGTGCCCCGGAGCCTACTATCATA
TGGCAAGATCCCCATGATACAGGTTCGGAATCTAGTGCCTTTGAATCTGGTAGCTCGAAACCTAGTACCCCAGAG
CAACCTGATGCCAGGTCAGTCGAGCCATTTAGGCCAGTTGAGACAGTCCAACCAGTTGAGCTAGTCACCCCAAAA
GAAACCAAGCCAGGAGACAAAAAGAAGCCCGGAGAGGGAAACAATCCGGTATACATGCCGCGTGAAGACCGACTG
AATCAAACACCGACCAAGGGAAATGCACAGGGCCTCTTTCTTCCTGCTTGTTGTGTCTTTGTGGGAAACCTCTCC
ATCAAGGTTTCTCCTGAAAAGTTGGAAGAAGACCTTACAGAAATGATCTCTACATTTGGCCGGTGTCATGTTAAA
ATCAAACTATCCCAGGGCGTGAAGAAACTGCCTGTTGGATTTGTACAGTTTGAAGACACCAAAGCAGCAAATGCT
GCATTAAAACAAAATGGAAACCTGATGCTTCATAATCGGGTGTTGAGATTGGAATCATCCAAAGCAAGACGAACT
GCCAACTTCGGTCGTCTCTCTGATGCTCCCGTCGAAAAAGCTGACGTCGTTGCTGCCCTGAGGGGACGTGGTAGC
CTCGAGAGCATAGCTATTGAGCACTTCGTCAACCAAGACGGAGAAGACTCTACCTTTGGTGTTGTGACTTTCGCA
TACCCCGACGATTACGCAGATGCCCTCCAGCATTTCCAAAACAATCCTGATTACTATATGACCAGATCCACCATG
GATCCCAACGACCAGCTTCCTCAGGATTACCCTGCAGGACACAGGTCATCTAACCAGCCTCCCGCAAACCGTGGC
AACCAGCAGCGATACAACAACACTGGCCGCAGACCCTTCCACCGTCCATGGTATAGCGGCGGCAACAATAACAAC
AATAGAGGCGGATTCCGAAATGCTCCTGGTCCTGCCCCCAGACAGCAAAACACATCCTTTGCAAATCATGGTCAC
AGTCAAAGCTTCAATGGCCAGGGTCATTCGTCTCACGGCTCTTTCTCTCAGAACTACTCTGGCAATGGTTTCCCT
CAGAACAACTTCAACCAAGGCTATCCCAGCCCCAACCCCAACTACAATCAAAACTTCCCTGGCAACAACTTCCAC
CCAAACTATCAGGGCAACTTCCCGAACTACCCCAATCAAAACTTCGTGGCTGCGGGTCCCTTTCCCAATGCGCCA
GTTCTGTTCAACCAAATGCAAATGCCTGAAGGCCCACCCCCGCCATATCATGCCGAGTACACTGCTATGCAAAAC
CCAGGTTTTCCCGTGTTCTTGGGCAATCAATCATACCAGCCTCCCAATACTCTTGCACCAATGATGACTCCGGTT
CAGGCTGTTGCTGGTCCTGTTCCTGGCGCTGTTCCTGGCGCTGTTCCTGGAGCTGTTCCTCGTCGCCGGCGATTG
CCCCCTCGTCCAGACTGTCCCTTGATTGTCTCCAGCCAGCCTCAATTTGACACCGAACAGCACCTGCAACTCTAC
TATGAGCCCTATCCCGGTAACGAACCCGTCGTGAATATGCAGCCAGGCTGGACCGGTCACACTTGTTTCGTGCAG
CCTGACTACAACCAGCCTTGCCCGCCCGACGCATATCCTCACAGTCGCCAATCTAGCATGGAAAGTCAGCATAAC
ACCTGTTCGCCGCCCAGGGTCAATGAATCCGAGTCAATCTTGACCCAGACTAAATTTCACACCCCTGAGGTCGAG
AGAGGTCGCCCACTAGTTCGGCCGCGCCATCCCAACACCGATGGAGGCTTTGACACGGCTCCAGTGTCTGCTCCT
GCTAAGGCTCAGAGAGACTCATCCTCTGTTAAACCCCTGGATGGGTCCTCAGGAAGAGCCAGCAAGTCCACTGAT
GCTCAGGTTGAGCCCGCTCTACCTATGAGAAAGCCTATCAAGTCCGAGAACAAAGCCACCGAACCTGAGACCAAG
CTCAACCCGCCTCAGCCTGAATCCACCTGTGGTCCGAGTCATGATGAAAAGAAAAAAGAATTGATGGATGAAATC
AAGCCACCGTTGAGCATTGATACCAATGAAGAAAGCGCAGGGTCCTCCTCCGAGGCCGGCCCTAAGACACCAGAC
ACGGAGCAGTCTCGGGAAAGCGCTAAACTTCAGACTCCAGCCAAAGCTGGCTCGGTGAAATCTGCCGGTAGTAAG
ACCCCTGATAGCGCTGAAACCCTCAAGCCAGCCGACAAGGGCACTTCGGACAAAGGCAAATCTCCGGAAGTGGCC
ACATCCACTCCAACCAAGAGTGGCAGCAAAAGACTTGAGCCCGCAGTGCCAGACAGCAAACATCTACTGGCTCGC
CATGCTTTCCAGCATCGCAAACCCCTCAAGAAAAAGTACCAACCCAAGACCGACACCGGCAAAACAGTTGAGCAG
TACACCCGTGAGATAAATGCGCAGCGTGCCTCGGTTGACCCAGACTCGCGTGTCCCTGAACATATTCTGCAAGAG
GTGATCCAAGAGCTAGAGAATGAGCGCAGAGAAAATATTCGGAAGAGTCTCGGTCTCGGACCCAGTGCTAAAAGT
AGCATGGACAGTGGTACTTCGAAGAAGAAGTAG
Transcript >Pro_DTO377G3_2|g6811.t1
ATGGCTATGCATTACGTTGAACAGAATATTTCTGCGCCTGTCTCTTGGTATAGTGCCCCGGAGCCTACTATCATA
TGGCAAGATCCCCATGATACAGGTTCGGAATCTAGTGCCTTTGAATCTGGTAGCTCGAAACCTAGTACCCCAGAG
CAACCTGATGCCAGGTCAGTCGAGCCATTTAGGCCAGTTGAGACAGTCCAACCAGTTGAGCTAGTCACCCCAAAA
GAAACCAAGCCAGGAGACAAAAAGAAGCCCGGAGAGGGAAACAATCCGGTATACATGCCGCGTGAAGACCGACTG
AATCAAACACCGACCAAGGGAAATGCACAGGGCCTCTTTCTTCCTGCTTGTTGTGTCTTTGTGGGAAACCTCTCC
ATCAAGGTTTCTCCTGAAAAGTTGGAAGAAGACCTTACAGAAATGATCTCTACATTTGGCCGGTGTCATGTTAAA
ATCAAACTATCCCAGGGCGTGAAGAAACTGCCTGTTGGATTTGTACAGTTTGAAGACACCAAAGCAGCAAATGCT
GCATTAAAACAAAATGGAAACCTGATGCTTCATAATCGGGTGTTGAGATTGGAATCATCCAAAGCAAGACGAACT
GCCAACTTCGGTCGTCTCTCTGATGCTCCCGTCGAAAAAGCTGACGTCGTTGCTGCCCTGAGGGGACGTGGTAGC
CTCGAGAGCATAGCTATTGAGCACTTCGTCAACCAAGACGGAGAAGACTCTACCTTTGGTGTTGTGACTTTCGCA
TACCCCGACGATTACGCAGATGCCCTCCAGCATTTCCAAAACAATCCTGATTACTATATGACCAGATCCACCATG
GATCCCAACGACCAGCTTCCTCAGGATTACCCTGCAGGACACAGGTCATCTAACCAGCCTCCCGCAAACCGTGGC
AACCAGCAGCGATACAACAACACTGGCCGCAGACCCTTCCACCGTCCATGGTATAGCGGCGGCAACAATAACAAC
AATAGAGGCGGATTCCGAAATGCTCCTGGTCCTGCCCCCAGACAGCAAAACACATCCTTTGCAAATCATGGTCAC
AGTCAAAGCTTCAATGGCCAGGGTCATTCGTCTCACGGCTCTTTCTCTCAGAACTACTCTGGCAATGGTTTCCCT
CAGAACAACTTCAACCAAGGCTATCCCAGCCCCAACCCCAACTACAATCAAAACTTCCCTGGCAACAACTTCCAC
CCAAACTATCAGGGCAACTTCCCGAACTACCCCAATCAAAACTTCGTGGCTGCGGGTCCCTTTCCCAATGCGCCA
GTTCTGTTCAACCAAATGCAAATGCCTGAAGGCCCACCCCCGCCATATCATGCCGAGTACACTGCTATGCAAAAC
CCAGGTTTTCCCGTGTTCTTGGGCAATCAATCATACCAGCCTCCCAATACTCTTGCACCAATGATGACTCCGGTT
CAGGCTGTTGCTGGTCCTGTTCCTGGCGCTGTTCCTGGCGCTGTTCCTGGAGCTGTTCCTCGTCGCCGGCGATTG
CCCCCTCGTCCAGACTGTCCCTTGATTGTCTCCAGCCAGCCTCAATTTGACACCGAACAGCACCTGCAACTCTAC
TATGAGCCCTATCCCGGTAACGAACCCGTCGTGAATATGCAGCCAGGCTGGACCGGTCACACTTGTTTCGTGCAG
CCTGACTACAACCAGCCTTGCCCGCCCGACGCATATCCTCACAGTCGCCAATCTAGCATGGAAAGTCAGCATAAC
ACCTGTTCGCCGCCCAGGGTCAATGAATCCGAGTCAATCTTGACCCAGACTAAATTTCACACCCCTGAGGTCGAG
AGAGGTCGCCCACTAGTTCGGCCGCGCCATCCCAACACCGATGGAGGCTTTGACACGGCTCCAGTGTCTGCTCCT
GCTAAGGCTCAGAGAGACTCATCCTCTGTTAAACCCCTGGATGGGTCCTCAGGAAGAGCCAGCAAGTCCACTGAT
GCTCAGGTTGAGCCCGCTCTACCTATGAGAAAGCCTATCAAGTCCGAGAACAAAGCCACCGAACCTGAGACCAAG
CTCAACCCGCCTCAGCCTGAATCCACCTGTGGTCCGAGTCATGATGAAAAGAAAAAAGAATTGATGGATGAAATC
AAGCCACCGTTGAGCATTGATACCAATGAAGAAAGCGCAGGGTCCTCCTCCGAGGCCGGCCCTAAGACACCAGAC
ACGGAGCAGTCTCGGGAAAGCGCTAAACTTCAGACTCCAGCCAAAGCTGGCTCGGTGAAATCTGCCGGTAGTAAG
ACCCCTGATAGCGCTGAAACCCTCAAGCCAGCCGACAAGGGCACTTCGGACAAAGGCAAATCTCCGGAAGTGGCC
ACATCCACTCCAACCAAGAGTGGCAGCAAAAGACTTGAGCCCGCAGTGCCAGACAGCAAACATCTACTGGCTCGC
CATGCTTTCCAGCATCGCAAACCCCTCAAGAAAAAGTACCAACCCAAGACCGACACCGGCAAAACAGTTGAGCAG
TACACCCGTGAGATAAATGCGCAGCGTGCCTCGGTTGACCCAGACTCGCGTGTCCCTGAACATATTCTGCAAGAG
GTGATCCAAGAGCTAGAGAATGAGCGCAGAGAAAATATTCGGAAGAGTCTCGGTCTCGGACCCAGTGCTAAAAGT
AGCATGGACAGTGGTACTTCGAAGAAGAAGTAG
Gene >Pro_DTO377G3_2|g6811.t1
ATGGCTATGCATTACGTTGAACAGAATATTTCTGCGCCTGTCTCTTGGTATAGTGCCCCGGAGCCTACTATCATA
TGGCAAGATCCCCATGATACAGGTTCGGAATCTAGTGCCTTTGAATCTGGTAGCTCGAAACCTAGTACCCCAGAG
CAACCTGATGCCAGGTCAGTCGAGCCATTTAGGCCAGTTGAGACAGTCCAACCAGTTGAGCTAGTCACCCCAAAA
GAAACCAAGCCAGGAGACAAAAAGAAGCCCGGAGAGGGAAACAATCCGGTATACATGCCGCGTGAAGACCGACTG
AATCAAACACCGACCAAGGGAAATGCACAGGGCCTCTTTCTTCCTGCTTGTTGTGTCTTTGTGGGAAAGTAGGTA
TTTCTCGATTCAATCTGACACTGTATACTGACTTTGAATAGCCTCTCCATCAAGGTTTCTCCTGAAAAGTTGGAA
GAAGACCTTACAGAAATGATCTCTACATTTGGCCGGTGTCATGTTAAAATCAAACTATCCCAGGGCGTGAAGAAA
CTGCCTGTTGGATTTGTACAGTTTGAAGTGAGTACAACTGTTTGATACATGAGATATATATCTCATATGGTATAC
TGACATACTAAATAGGACACCAAAGCAGCAAATGCTGCATTAAAACAAAATGGAAACCTGATGCTTCATAATCGG
GTGTTGAGATTGGAATCATCCAAAGCAAGACGTGAGTGTTCTTTTTATTTTATTGGACTTCATCTGCTCAACACC
TTTTGCATCCTGCACCCTGCACCTTGCACCTTTCCACCTTCGCACTTTCTCACTTTCTCACCTTCTATCTTCACA
CCTTCTGAACTTTTTGTTCTCCTTAGGAACTGCCAACTTCGGTCGTCTCTCTGATGCTCCCGTCGAAAAAGCTGA
CGTCGTTGCTGCCCTGAGGGGACGTGGTAGCCTCGAGAGCATAGCTATTGAGCACTTCGTCAACCAAGACGGAGA
AGACTCTACCTTTGGTGTTGTGACTTTCGCATACCCCGACGATTACGCAGATGCCCTCCAGGTAAGTCGACTGTC
CAAGTTTGCTTTGACTCCACTAACCACTTGACCATTATAGCATTTCCAAAACAATCCTGATTACTATATGACCAG
ATCCACCATGGATCCCAACGACCAGCTTCCTCAGGATTACCCTGCAGGACACAGGTCATCTAACCAGCCTCCCGC
AAACCGTGGCAACCAGCAGCGATACAACAACACTGGCCGCAGACCCTTCCACCGTCCATGGTATAGCGGCGGCAA
CAATAACAACAATAGAGGCGGATTCCGAAATGCTCCTGGTCCTGCCCCCAGACAGCAAAACACATCCTTTGCAAA
TCATGGTCACAGTCAAAGCTTCAATGGCCAGGGTCATTCGTCTCACGGCTCTTTCTCTCAGAACTACTCTGGCAA
TGGTTTCCCTCAGAACAACTTCAACCAAGGCTATCCCAGCCCCAACCCCAACTACAATCAAAACTTCCCTGGCAA
CAACTTCCACCCAAACTATCAGGGCAACTTCCCGAACTACCCCAATCAAAACTTCGTGGCTGCGGGTCCCTTTCC
CAATGCGCCAGTTCTGTTCAACCAAATGCAAATGCCTGAAGGCCCACCCCCGCCATATCATGCCGAGTACACTGC
TATGCAAAACCCAGGTTTTCCCGTGTTCTTGGGCAATCAATCATACCAGCCTCCCAATACTCTTGCACCAATGAT
GACTCCGGTTCAGGCTGTTGCTGGTCCTGTTCCTGGCGCTGTTCCTGGCGCTGTTCCTGGAGCTGTTCCTCGTCG
CCGGCGATTGCCCCCTCGTCCAGACTGTCCCTTGATTGTCTCCAGCCAGCCTCAATTTGACACCGAACAGCACCT
GCAACTCTACTATGAGCCCTATCCCGGTAACGAACCCGTCGTGAATATGCAGCCAGGCTGGACCGGTCACACTTG
TTTCGTGCAGCCTGACTACAACCAGCCTTGCCCGCCCGACGCATATCCTCACAGTCGCCAATCTAGCATGGAAAG
TCAGCATAACACCTGTTCGCCGCCCAGGGTCAATGAATCCGAGTCAATCTTGACCCAGACTAAATTTCACACCCC
TGAGGTCGAGAGAGGTCGCCCACTAGTTCGGCCGCGCCATCCCAACACCGATGGAGGCTTTGACACGGCTCCAGT
GTCTGCTCCTGCTAAGGCTCAGAGAGACTCATCCTCTGTTAAACCCCTGGATGGGTCCTCAGGAAGAGCCAGCAA
GTCCACTGATGCTCAGGTTGAGCCCGCTCTACCTATGAGAAAGCCTATCAAGTCCGAGAACAAAGCCACCGAACC
TGAGACCAAGCTCAACCCGCCTCAGCCTGAATCCACCTGTGGTCCGAGTCATGATGAAAAGAAAAAAGAATTGAT
GGATGAAATCAAGCCACCGTTGAGCATTGATACCAATGAAGAAAGCGCAGGGTCCTCCTCCGAGGCCGGCCCTAA
GACACCAGACACGGAGCAGTCTCGGGAAAGCGCTAAACTTCAGACTCCAGCCAAAGCTGGCTCGGTGAAATCTGC
CGGTAGTAAGACCCCTGATAGCGCTGAAACCCTCAAGCCAGCCGACAAGGGCACTTCGGACAAAGGCAAATCTCC
GGAAGTGGCCACATCCACTCCAACCAAGAGTGGCAGCAAAAGACTTGAGCCCGCAGTGCCAGACAGCAAACATCT
ACTGGCTCGCCATGCTTTCCAGCATCGCAAACCCCTCAAGAAAAAGTACCAACCCAAGACCGACACCGGCAAAAC
AGTTGAGCAGTACACCCGTGAGATAAATGCGCAGCGTGCCTCGGTTGACCCAGACTCGCGTGTCCCTGAACATAT
TCTGCAAGAGGTGATCCAAGAGCTAGAGAATGAGCGCAGAGAAAATATTCGGAAGAGTCTCGGTCTCGGACCCAG
TGCTAAAAGTAGCATGGACAGTGGTACTTCGAAGAAGAAGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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