© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6804.t1 |
| Gene name | |
| Location | scaffold_19:68078..70472 |
| Strand | + |
| Gene length (bp) | 2394 |
| Transcript length (bp) | 2256 |
| Coding sequence length (bp) | 2256 |
| Protein length (aa) | 752 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13641 | Glyco_tranf_2_3 | Glycosyltransferase like family 2 | 1.3E-21 | 230 | 463 |
| PF13632 | Glyco_trans_2_3 | Glycosyl transferase family group 2 | 2.5E-18 | 330 | 516 |
| PF00535 | Glycos_transf_2 | Glycosyl transferase family 2 | 1.2E-13 | 232 | 411 |
| PF03552 | Cellulose_synt | Cellulose synthase | 6.7E-08 | 387 | 535 |
| PF13506 | Glyco_transf_21 | Glycosyl transferase family 21 | 3.2E-10 | 326 | 462 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0030244 | cellulose biosynthetic process | Yes |
| GO:0016020 | membrane | Yes |
| GO:0016760 | cellulose synthase (UDP-forming) activity | Yes |
| GO:0016757 | glycosyltransferase activity | Yes |
| GO:0030243 | cellulose metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0044264 | cellular polysaccharide metabolic process | No |
| GO:0051273 | beta-glucan metabolic process | No |
| GO:0016740 | transferase activity | No |
| GO:0005575 | cellular_component | No |
| GO:0016051 | carbohydrate biosynthetic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044042 | glucan metabolic process | No |
| GO:0034645 | cellular macromolecule biosynthetic process | No |
| GO:0008150 | biological_process | No |
| GO:0006073 | cellular glucan metabolic process | No |
| GO:0035251 | UDP-glucosyltransferase activity | No |
| GO:0016758 | hexosyltransferase activity | No |
| GO:0008194 | UDP-glycosyltransferase activity | No |
| GO:0046527 | glucosyltransferase activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0033692 | cellular polysaccharide biosynthetic process | No |
| GO:0000271 | polysaccharide biosynthetic process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0009987 | cellular process | No |
| GO:0009059 | macromolecule biosynthetic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0051274 | beta-glucan biosynthetic process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0009250 | glucan biosynthetic process | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0008152 | metabolic process | No |
| GO:0005975 | carbohydrate metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0009058 | biosynthetic process | No |
| GO:0005976 | polysaccharide metabolic process | No |
| GO:0034637 | cellular carbohydrate biosynthetic process | No |
| GO:0016759 | cellulose synthase activity | No |
| GO:0044262 | cellular carbohydrate metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 147 | 169 | 22 |
| 2 | 182 | 204 | 22 |
| 3 | 497 | 519 | 22 |
| 4 | 532 | 554 | 22 |
| 5 | 569 | 591 | 22 |
| 6 | 624 | 646 | 22 |
| 7 | 661 | 683 | 22 |
| 8 | 727 | 749 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 76.75 | 46.87 | 106.64 |
| 5d_25C | Five days - 25 degrees Celsius | 35.14 | 20.52 | 49.76 |
| 7d_25C | Seven days - 25 degrees Celsius | 38.03 | 21.89 | 54.18 |
| 10d_25C | Ten days - 25 degrees Celsius | 20.37 | 11.47 | 29.27 |
| 7d_15C | Seven days - 15 degrees Celsius | 30.08 | 17.22 | 42.94 |
| 7d_30C | Seven days - 30 degrees Celsius | 15.39 | 8.18 | 22.61 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.000700 | yes |
| 3d_25C | 7d_25C | 0.000700 | yes |
| 3d_25C | 7d_15C | 0.000700 | yes |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.812016 | no |
| 5d_25C | 7d_15C | 0.595651 | no |
| 5d_25C | 7d_30C | 0.000700 | yes |
| 5d_25C | 10d_25C | 0.012904 | yes |
| 7d_25C | 7d_15C | 0.371148 | no |
| 7d_25C | 7d_30C | 0.000700 | yes |
| 7d_25C | 10d_25C | 0.004045 | yes |
| 7d_15C | 7d_30C | 0.004450 | yes |
| 7d_15C | 10d_25C | 0.099168 | no |
| 7d_30C | 10d_25C | 0.300529 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6804.t1 MDRRGGHDEDEKVELNAYPANHSNHSFESQPFSPSPVTPRPLTPVRPGHFPTDEYGQPVWLQPTARMSGNSDSFH NSSWDLRTPYDSRSASPTLYQNNGVQESHQSLAPLVSSPAPPGFAKDWVKSGSIARINDRDDADTWKGWKRWVFA LVPFLTFANTGIYLFYLGLRIACIIMAQNVSGVSYAGAWVFVAIEITVAIPSLMHNCWTMMALKKRGRAKLRLTG NDCPTVDVFITCCGEDDEVVLDTVRGACDQDYPPDQMRVIILDDAKSATLEAGCNQLAVNHPNIIYMAREKIPGK PHHFKAGNLNYGLEQVTLLPGGAGQFMAALDADMIPEQEWLRAILPHLLVDPKMALACPPQLFYNTPASDPLAQS LDFFVHVIEPIKDALGVAWCTGSGYVVRREALEEIGNFPLGSLAEDVATSTLMLGKGWKTAYIHEPLQFGTVPED FGGHLKQRTRWAIGTVDTAAKLKFCLWGDAVRQMTAAQRFSGFLYATLSVYTLLLTASLFAIPIILLWGKRLVAF ATEEQLRWLIWSCFAATISNRLCELALFIPAGYNTGQRGSRYQLWMSPYIALCIVRAFILPTWLGGQTQAFKPTG SLGSALNERDPNKSKNMFVRLRVILLNYMASFHLAFVYVTLIGVVISSYRCFAQNSGFRDIILCLITHAFWPPLT FLFICTSLWTPVSYAIDPPRMPEREELLTRDPKTGVAHPTKKSKKIAFGGQAAWFELEYTVATVVTILVFIYSFM F* |
| Coding | >Pro_DTO377G3_2|g6804.t1 ATGGACAGGCGTGGTGGTCATGACGAGGACGAAAAGGTAGAACTGAATGCCTATCCTGCCAACCATTCAAACCAC AGCTTCGAATCTCAGCCTTTTTCACCCTCACCAGTAACTCCAAGGCCTCTCACTCCAGTCAGACCGGGTCATTTC CCTACCGATGAATACGGGCAACCCGTTTGGCTTCAACCCACCGCTCGAATGTCGGGCAACTCCGATTCCTTTCAC AACTCCTCCTGGGACCTACGAACGCCGTATGATTCCCGGTCGGCTTCACCCACTCTATATCAAAACAATGGAGTG CAAGAAAGCCACCAGAGTCTAGCTCCCCTAGTGAGCTCCCCGGCTCCCCCGGGATTTGCAAAGGATTGGGTCAAG TCTGGATCGATTGCTCGAATTAACGACCGTGATGATGCGGATACATGGAAAGGGTGGAAGAGATGGGTATTTGCC CTGGTACCGTTTCTCACATTCGCCAACACCGGAATCTACTTGTTCTACCTCGGGCTGAGAATTGCCTGCATTATC ATGGCTCAAAATGTTTCTGGAGTTTCATATGCCGGAGCTTGGGTTTTTGTGGCTATCGAGATCACTGTTGCAATC CCCTCCCTCATGCACAACTGTTGGACTATGATGGCGTTGAAGAAGAGAGGCCGTGCCAAGCTGAGATTGACCGGC AATGACTGTCCGACAGTGGATGTGTTTATTACCTGCTGTGGAGAGGATGATGAAGTGGTCCTCGATACTGTCCGT GGTGCGTGTGACCAGGACTACCCTCCCGACCAGATGAGGGTTATCATCTTGGACGACGCCAAGTCTGCCACCCTC GAGGCTGGCTGCAACCAACTCGCTGTGAATCACCCCAACATCATTTACATGGCTCGTGAAAAGATCCCCGGAAAA CCCCACCACTTCAAGGCAGGTAATCTGAACTACGGTCTGGAGCAGGTCACCCTTTTGCCTGGAGGCGCCGGCCAG TTCATGGCCGCCCTGGACGCTGATATGATTCCTGAACAAGAGTGGCTTCGTGCGATTCTTCCCCACTTGTTGGTG GATCCCAAAATGGCCCTTGCATGCCCGCCGCAGCTTTTCTACAATACCCCTGCATCCGACCCGCTTGCCCAGAGT TTGGATTTCTTCGTGCATGTTATTGAGCCGATCAAGGATGCCCTCGGTGTGGCTTGGTGCACTGGATCTGGTTAC GTCGTTCGACGCGAGGCGCTCGAAGAGATTGGCAACTTCCCGCTCGGTTCCTTGGCTGAAGATGTCGCGACCTCC ACACTCATGCTTGGCAAAGGATGGAAAACCGCATACATCCACGAGCCGCTTCAATTTGGTACCGTGCCGGAAGAC TTTGGTGGACATCTCAAGCAGCGTACGCGATGGGCAATTGGAACCGTCGACACCGCTGCCAAGCTGAAGTTCTGT CTCTGGGGTGACGCCGTTCGACAGATGACCGCTGCTCAACGATTCTCCGGCTTCCTCTATGCAACTCTCAGTGTC TATACCCTCCTGCTCACCGCTTCCCTCTTTGCTATCCCGATCATCCTCTTGTGGGGCAAGCGCCTTGTCGCCTTT GCGACAGAAGAGCAACTCCGCTGGCTGATCTGGTCCTGCTTCGCCGCCACTATCTCCAACCGTCTGTGCGAACTG GCCCTGTTCATCCCGGCGGGCTATAACACCGGCCAGCGAGGCTCCCGCTATCAACTTTGGATGTCACCCTATATC GCTCTCTGTATTGTGCGCGCCTTCATCCTCCCCACCTGGCTGGGCGGTCAAACCCAAGCCTTCAAGCCCACTGGT TCGCTGGGCTCAGCTCTGAACGAGCGCGACCCGAACAAGTCCAAGAACATGTTCGTCCGCCTGCGCGTGATCTTA CTCAACTACATGGCCAGCTTCCACCTTGCCTTTGTCTACGTCACCCTCATCGGAGTCGTCATCTCCTCTTACCGC TGTTTCGCCCAGAACAGTGGCTTCCGAGATATCATCCTCTGCCTCATCACGCATGCTTTCTGGCCTCCACTGACC TTCCTTTTCATTTGCACTTCGCTGTGGACCCCGGTCTCGTATGCGATCGACCCGCCACGCATGCCGGAGCGTGAA GAACTCCTTACACGTGACCCTAAGACTGGTGTGGCGCACCCGACGAAGAAGAGTAAAAAGATCGCCTTCGGTGGC CAGGCCGCTTGGTTCGAGCTTGAATACACGGTTGCCACCGTGGTCACAATTTTGGTCTTCATCTACTCGTTTATG TTCTAA |
| Transcript | >Pro_DTO377G3_2|g6804.t1 ATGGACAGGCGTGGTGGTCATGACGAGGACGAAAAGGTAGAACTGAATGCCTATCCTGCCAACCATTCAAACCAC AGCTTCGAATCTCAGCCTTTTTCACCCTCACCAGTAACTCCAAGGCCTCTCACTCCAGTCAGACCGGGTCATTTC CCTACCGATGAATACGGGCAACCCGTTTGGCTTCAACCCACCGCTCGAATGTCGGGCAACTCCGATTCCTTTCAC AACTCCTCCTGGGACCTACGAACGCCGTATGATTCCCGGTCGGCTTCACCCACTCTATATCAAAACAATGGAGTG CAAGAAAGCCACCAGAGTCTAGCTCCCCTAGTGAGCTCCCCGGCTCCCCCGGGATTTGCAAAGGATTGGGTCAAG TCTGGATCGATTGCTCGAATTAACGACCGTGATGATGCGGATACATGGAAAGGGTGGAAGAGATGGGTATTTGCC CTGGTACCGTTTCTCACATTCGCCAACACCGGAATCTACTTGTTCTACCTCGGGCTGAGAATTGCCTGCATTATC ATGGCTCAAAATGTTTCTGGAGTTTCATATGCCGGAGCTTGGGTTTTTGTGGCTATCGAGATCACTGTTGCAATC CCCTCCCTCATGCACAACTGTTGGACTATGATGGCGTTGAAGAAGAGAGGCCGTGCCAAGCTGAGATTGACCGGC AATGACTGTCCGACAGTGGATGTGTTTATTACCTGCTGTGGAGAGGATGATGAAGTGGTCCTCGATACTGTCCGT GGTGCGTGTGACCAGGACTACCCTCCCGACCAGATGAGGGTTATCATCTTGGACGACGCCAAGTCTGCCACCCTC GAGGCTGGCTGCAACCAACTCGCTGTGAATCACCCCAACATCATTTACATGGCTCGTGAAAAGATCCCCGGAAAA CCCCACCACTTCAAGGCAGGTAATCTGAACTACGGTCTGGAGCAGGTCACCCTTTTGCCTGGAGGCGCCGGCCAG TTCATGGCCGCCCTGGACGCTGATATGATTCCTGAACAAGAGTGGCTTCGTGCGATTCTTCCCCACTTGTTGGTG GATCCCAAAATGGCCCTTGCATGCCCGCCGCAGCTTTTCTACAATACCCCTGCATCCGACCCGCTTGCCCAGAGT TTGGATTTCTTCGTGCATGTTATTGAGCCGATCAAGGATGCCCTCGGTGTGGCTTGGTGCACTGGATCTGGTTAC GTCGTTCGACGCGAGGCGCTCGAAGAGATTGGCAACTTCCCGCTCGGTTCCTTGGCTGAAGATGTCGCGACCTCC ACACTCATGCTTGGCAAAGGATGGAAAACCGCATACATCCACGAGCCGCTTCAATTTGGTACCGTGCCGGAAGAC TTTGGTGGACATCTCAAGCAGCGTACGCGATGGGCAATTGGAACCGTCGACACCGCTGCCAAGCTGAAGTTCTGT CTCTGGGGTGACGCCGTTCGACAGATGACCGCTGCTCAACGATTCTCCGGCTTCCTCTATGCAACTCTCAGTGTC TATACCCTCCTGCTCACCGCTTCCCTCTTTGCTATCCCGATCATCCTCTTGTGGGGCAAGCGCCTTGTCGCCTTT GCGACAGAAGAGCAACTCCGCTGGCTGATCTGGTCCTGCTTCGCCGCCACTATCTCCAACCGTCTGTGCGAACTG GCCCTGTTCATCCCGGCGGGCTATAACACCGGCCAGCGAGGCTCCCGCTATCAACTTTGGATGTCACCCTATATC GCTCTCTGTATTGTGCGCGCCTTCATCCTCCCCACCTGGCTGGGCGGTCAAACCCAAGCCTTCAAGCCCACTGGT TCGCTGGGCTCAGCTCTGAACGAGCGCGACCCGAACAAGTCCAAGAACATGTTCGTCCGCCTGCGCGTGATCTTA CTCAACTACATGGCCAGCTTCCACCTTGCCTTTGTCTACGTCACCCTCATCGGAGTCGTCATCTCCTCTTACCGC TGTTTCGCCCAGAACAGTGGCTTCCGAGATATCATCCTCTGCCTCATCACGCATGCTTTCTGGCCTCCACTGACC TTCCTTTTCATTTGCACTTCGCTGTGGACCCCGGTCTCGTATGCGATCGACCCGCCACGCATGCCGGAGCGTGAA GAACTCCTTACACGTGACCCTAAGACTGGTGTGGCGCACCCGACGAAGAAGAGTAAAAAGATCGCCTTCGGTGGC CAGGCCGCTTGGTTCGAGCTTGAATACACGGTTGCCACCGTGGTCACAATTTTGGTCTTCATCTACTCGTTTATG TTCTAA |
| Gene | >Pro_DTO377G3_2|g6804.t1 ATGGACAGGCGTGGTGGTCATGACGAGGACGAAAAGGTAGAACTGAATGCCTATCCTGCCAACCATTCAAACCAC AGCTTCGAATCTCAGCCTTTTTCACCCTCACCAGTAACTCCAAGGCCTCTCACTCCAGTCAGACCGGGTCATTTC CCTACCGATGAATACGGGCAACCCGTTTGGCTTCAACCCACCGCTCGAATGTCGGGCAACTCCGATTCCTTTCAC AACTCCTCCTGGGACCTACGAACGCCGTATGATTCCCGGTCGGCTTCACCCACTCTAGTTAGTACAGTCCGTCTT TGTTTCTTTGGTCTCTTTGTTGTCGGTATAGATCCAGCCTAACCGGTTTCCCATACAGTATCAAAACAATGGAGT GCAAGAAAGCCACCAGAGTCTAGCTCCCCTAGTGAGCTCCCCGGCTCCCCCGGGATTTGCAAAGGATTGGGTCAA GTCTGGATCGATTGCTCGAATTAACGACCGTGATGATGCGGATACATGGAAAGGGTGGAAGAGATGGGTATTTGC CCTGGTACCGTTTCTCACATTCGCCAACACCGGAATCTACTTGTTCTACCTCGGGCTGAGAATTGCCTGCATTAT CATGGCTCAAAATGTTTCTGGAGTTTCATATGCCGGAGCTTGGGTTTTTGTGGCTATCGAGATCACTGTTGCAAT CCCCTCCCTCATGCACAACTGTTGGACTATGATGGCGTTGAAGAAGAGAGGCCGTGCCAAGCTGAGATTGACCGG CAATGACTGTCCGACAGTGGATGTGTTTATTACCTGCTGTGGAGAGGATGATGAAGTGGTCCTCGATACTGTCCG TGGTGCGTGTGACCAGGACTACCCTCCCGACCAGATGAGGGTTATCATCTTGGACGACGCCAAGTCTGCCACCCT CGAGGCTGGCTGCAACCAACTCGCTGTGAATCACCCCAACATCATTTACATGGCTCGTGAAAAGATCCCCGGAAA ACCCCACCACTTCAAGGCAGGTAATCTGAACTACGGTCTGGAGCAGGTCACCCTTTTGCCTGGAGGCGCCGGCCA GTTCATGGCCGCCCTGGACGCTGATATGGTAAGTTACAGGTCCCGGCCTACGTTGAAATTGAAATTCCTGTACTG ATTGACAATCTGCAGATTCCTGAACAAGAGTGGCTTCGTGCGATTCTTCCCCACTTGTTGGTGGATCCCAAAATG GCCCTTGCATGCCCGCCGCAGCTTTTCTACAATACCCCTGCATCCGACCCGCTTGCCCAGAGTTTGGATTTCTTC GTGCATGTTATTGAGCCGATCAAGGATGCCCTCGGTGTGGCTTGGTGCACTGGATCTGGTTACGTCGTTCGACGC GAGGCGCTCGAAGAGATTGGCAACTTCCCGCTCGGTTCCTTGGCTGAAGATGTCGCGACCTCCACACTCATGCTT GGCAAAGGATGGAAAACCGCATACATCCACGAGCCGCTTCAATTTGGTACCGTGCCGGAAGACTTTGGTGGACAT CTCAAGCAGCGTACGCGATGGGCAATTGGAACCGTCGACACCGCTGCCAAGCTGAAGTTCTGTCTCTGGGGTGAC GCCGTTCGACAGATGACCGCTGCTCAACGATTCTCCGGCTTCCTCTATGCAACTCTCAGTGTCTATACCCTCCTG CTCACCGCTTCCCTCTTTGCTATCCCGATCATCCTCTTGTGGGGCAAGCGCCTTGTCGCCTTTGCGACAGAAGAG CAACTCCGCTGGCTGATCTGGTCCTGCTTCGCCGCCACTATCTCCAACCGTCTGTGCGAACTGGCCCTGTTCATC CCGGCGGGCTATAACACCGGCCAGCGAGGCTCCCGCTATCAACTTTGGATGTCACCCTATATCGCTCTCTGTATT GTGCGCGCCTTCATCCTCCCCACCTGGCTGGGCGGTCAAACCCAAGCCTTCAAGCCCACTGGTTCGCTGGGCTCA GCTCTGAACGAGCGCGACCCGAACAAGTCCAAGAACATGTTCGTCCGCCTGCGCGTGATCTTACTCAACTACATG GCCAGCTTCCACCTTGCCTTTGTCTACGTCACCCTCATCGGAGTCGTCATCTCCTCTTACCGCTGTTTCGCCCAG AACAGTGGCTTCCGAGATATCATCCTCTGCCTCATCACGCATGCTTTCTGGCCTCCACTGACCTTCCTTTTCATT TGCACTTCGCTGTGGACCCCGGTCTCGTATGCGATCGACCCGCCACGCATGCCGGAGCGTGAAGAACTCCTTACA CGTGACCCTAAGACTGGTGTGGCGCACCCGACGAAGAAGAGTAAAAAGATCGCCTTCGGTGGCCAGGCCGCTTGG TTCGAGCTTGAATACACGGTTGCCACCGTGGTCACAATTTTGGTCTTCATCTACTCGTTTATGTTCTAA |