© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6800.t1 |
| Gene name | |
| Location | scaffold_19:59225..61028 |
| Strand | - |
| Gene length (bp) | 1803 |
| Transcript length (bp) | 1581 |
| Coding sequence length (bp) | 1581 |
| Protein length (aa) | 527 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13520 | AA_permease_2 | Amino acid permease | 1.8E-50 | 54 | 497 |
| PF00324 | AA_permease | Amino acid permease | 9.9E-25 | 70 | 501 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0016020 | membrane | Yes |
| GO:0008150 | biological_process | No |
| GO:0051234 | establishment of localization | No |
| GO:0006810 | transport | No |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 64 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 53 | 72 | 19 |
| 2 | 82 | 104 | 22 |
| 3 | 138 | 160 | 22 |
| 4 | 175 | 197 | 22 |
| 5 | 202 | 224 | 22 |
| 6 | 244 | 266 | 22 |
| 7 | 287 | 309 | 22 |
| 8 | 333 | 355 | 22 |
| 9 | 387 | 409 | 22 |
| 10 | 413 | 435 | 22 |
| 11 | 456 | 478 | 22 |
| 12 | 488 | 510 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6800.t1 MTKAPGLEMQDQEVQAVERDAFSEHDLKAGAGVDDIDMQRMGKAQEFKRNMRPVAALSFASVLQATWEFILISNY EGLYNGGLPGLFYSYLWTFIGFGFIIASISEMASMAPTSGGQYHWVSEWSSPRYQKFLSYITGWMSVLAWQAGAA SGSFLTGTIIQGLISVRNPDYDPQGWQGTLFVFAMVLVIYIVNVYGSDVMPVLNNLLMILHVVSWAVIIIVLWVM APHQSAEAVFVTQWKNYGGWSTMGLSVMVGQISAIYGSLSSDATAHMSEEVKDAARYVPIAMAWGYFSNGLMAIV MIITYLFATPSVEDSLNDATGFPFLYVFQKATSIAGTNGLTAIIILPVIFSNILFNASTSRQTFAFARDQGLPFA KWIGKVDAQRQIPVNAIALSCVISCALSLINIGSETAFNAIISLNVAALMYTYITSISCVIYRKIWYPDTLPPRR WDMGRWGLAVNIIGLFYCCFAFFWSLWPGDADVTLENFNWSVVIFVGVFIVSLGMYVVKGRKEYVGPSVIVQNQE W* |
| Coding | >Pro_DTO377G3_2|g6800.t1 ATGACCAAAGCACCTGGGCTAGAAATGCAGGACCAGGAGGTGCAAGCTGTAGAGCGCGATGCTTTTTCAGAGCAT GACTTAAAGGCAGGCGCAGGTGTCGACGACATTGACATGCAGCGGATGGGAAAGGCGCAGGAGTTCAAGAGAAAC ATGCGACCTGTGGCAGCTTTGAGTTTTGCGTCGGTTTTGCAAGCGACGTGGGAGTTTATTCTTATCTCTAATTAC GAAGGGTTGTATAATGGAGGCTTACCAGGTCTCTTCTACTCCTATCTATGGACATTCATTGGATTCGGATTCATC ATCGCCTCGATCTCTGAAATGGCATCTATGGCTCCGACTTCTGGCGGGCAGTATCACTGGGTTTCGGAGTGGTCT TCGCCTCGATACCAGAAGTTCCTGAGTTATATTACCGGCTGGATGTCAGTATTAGCATGGCAAGCTGGCGCAGCC TCTGGCTCATTCCTCACTGGAACTATCATCCAGGGACTGATCAGCGTGCGGAACCCGGATTACGATCCGCAGGGC TGGCAGGGCACGCTCTTCGTCTTTGCGATGGTATTGGTGATTTATATCGTCAATGTGTACGGATCTGACGTGATG CCCGTACTGAATAATTTACTGATGATTCTCCACGTTGTATCGTGGGCGGTTATTATAATCGTCCTGTGGGTGATG GCTCCGCACCAATCCGCCGAAGCGGTGTTCGTGACGCAGTGGAAGAATTACGGCGGTTGGTCTACGATGGGACTG AGCGTGATGGTGGGACAGATCTCAGCTATCTACGGCTCTCTGAGCTCCGACGCAACGGCCCACATGTCCGAAGAG GTCAAAGACGCCGCTCGATACGTGCCGATCGCCATGGCCTGGGGCTACTTTAGTAACGGCCTCATGGCGATCGTC ATGATCATCACCTATCTCTTCGCCACGCCGTCGGTCGAAGACTCGTTAAACGACGCCACGGGATTCCCATTCCTG TATGTCTTCCAGAAGGCAACGTCTATCGCCGGAACCAATGGACTCACGGCGATTATCATCCTCCCCGTGATCTTC AGCAACATCCTCTTCAACGCCTCCACCTCCCGACAGACCTTCGCCTTTGCCCGCGACCAGGGCCTCCCATTCGCG AAATGGATCGGCAAAGTGGATGCCCAGCGGCAGATCCCTGTGAATGCCATCGCGCTGTCCTGCGTCATCAGCTGC GCGTTATCGCTTATCAATATCGGCTCCGAGACTGCGTTCAACGCTATTATCTCGCTCAACGTGGCGGCGCTGATG TACACGTATATTACATCGATTAGCTGCGTGATCTACCGCAAGATCTGGTATCCTGATACCCTGCCGCCGCGTCGG TGGGATATGGGACGGTGGGGACTGGCGGTTAATATTATTGGGCTGTTTTACTGCTGTTTCGCGTTCTTCTGGTCG TTGTGGCCCGGGGATGCCGACGTCACTCTGGAGAACTTTAATTGGAGTGTGGTTATCTTTGTTGGGGTTTTTATC GTCAGCCTTGGGATGTATGTTGTCAAGGGCCGGAAGGAATATGTTGGTCCTTCTGTTATTGTGCAGAATCAGGAA TGGTGA |
| Transcript | >Pro_DTO377G3_2|g6800.t1 ATGACCAAAGCACCTGGGCTAGAAATGCAGGACCAGGAGGTGCAAGCTGTAGAGCGCGATGCTTTTTCAGAGCAT GACTTAAAGGCAGGCGCAGGTGTCGACGACATTGACATGCAGCGGATGGGAAAGGCGCAGGAGTTCAAGAGAAAC ATGCGACCTGTGGCAGCTTTGAGTTTTGCGTCGGTTTTGCAAGCGACGTGGGAGTTTATTCTTATCTCTAATTAC GAAGGGTTGTATAATGGAGGCTTACCAGGTCTCTTCTACTCCTATCTATGGACATTCATTGGATTCGGATTCATC ATCGCCTCGATCTCTGAAATGGCATCTATGGCTCCGACTTCTGGCGGGCAGTATCACTGGGTTTCGGAGTGGTCT TCGCCTCGATACCAGAAGTTCCTGAGTTATATTACCGGCTGGATGTCAGTATTAGCATGGCAAGCTGGCGCAGCC TCTGGCTCATTCCTCACTGGAACTATCATCCAGGGACTGATCAGCGTGCGGAACCCGGATTACGATCCGCAGGGC TGGCAGGGCACGCTCTTCGTCTTTGCGATGGTATTGGTGATTTATATCGTCAATGTGTACGGATCTGACGTGATG CCCGTACTGAATAATTTACTGATGATTCTCCACGTTGTATCGTGGGCGGTTATTATAATCGTCCTGTGGGTGATG GCTCCGCACCAATCCGCCGAAGCGGTGTTCGTGACGCAGTGGAAGAATTACGGCGGTTGGTCTACGATGGGACTG AGCGTGATGGTGGGACAGATCTCAGCTATCTACGGCTCTCTGAGCTCCGACGCAACGGCCCACATGTCCGAAGAG GTCAAAGACGCCGCTCGATACGTGCCGATCGCCATGGCCTGGGGCTACTTTAGTAACGGCCTCATGGCGATCGTC ATGATCATCACCTATCTCTTCGCCACGCCGTCGGTCGAAGACTCGTTAAACGACGCCACGGGATTCCCATTCCTG TATGTCTTCCAGAAGGCAACGTCTATCGCCGGAACCAATGGACTCACGGCGATTATCATCCTCCCCGTGATCTTC AGCAACATCCTCTTCAACGCCTCCACCTCCCGACAGACCTTCGCCTTTGCCCGCGACCAGGGCCTCCCATTCGCG AAATGGATCGGCAAAGTGGATGCCCAGCGGCAGATCCCTGTGAATGCCATCGCGCTGTCCTGCGTCATCAGCTGC GCGTTATCGCTTATCAATATCGGCTCCGAGACTGCGTTCAACGCTATTATCTCGCTCAACGTGGCGGCGCTGATG TACACGTATATTACATCGATTAGCTGCGTGATCTACCGCAAGATCTGGTATCCTGATACCCTGCCGCCGCGTCGG TGGGATATGGGACGGTGGGGACTGGCGGTTAATATTATTGGGCTGTTTTACTGCTGTTTCGCGTTCTTCTGGTCG TTGTGGCCCGGGGATGCCGACGTCACTCTGGAGAACTTTAATTGGAGTGTGGTTATCTTTGTTGGGGTTTTTATC GTCAGCCTTGGGATGTATGTTGTCAAGGGCCGGAAGGAATATGTTGGTCCTTCTGTTATTGTGCAGAATCAGGAA TGGTGA |
| Gene | >Pro_DTO377G3_2|g6800.t1 ATGACCAAAGCACCTGGGCTAGAAATGCAGGACCAGGAGGTGCAAGCTGTAGAGCGCGATGCTTTTTCAGAGCAT GACTTAAAGGCAGGCGCAGGTGTCGACGACATTGACATGCAGCGGATGGGAAAGGCGCAGGAGTTCAAGGTATGT ATACGTTTCACGGCGTTGATATATGTCTGACATTATCAAGAGAAACATGCGACCTGTGGCAGCTTTGAGTTTTGC GTCGGTTTTGCAAGCGACGTGGGAGTTTATTCTTATGTGAGTATGAATATCATACTACAAGATTATGTCTATTTA CATCTCTGATTCGTGCTGTATTCAGCTCTAATTACGAAGGGTTGTATAATGGAGGCTTACCAGGTCTCTTCTACT CCTATCTATGGACATTCATTGGATTCGGATTCATCATCGCCTCGATCTCTGAAATGGCATCTATGGCTCCGACTT CTGGCGGGCAGTATCACTGGGTTTCGGAGTGGTCTTCGCCTCGATACCAGAAGTTCCTGAGTTATATTACCGGTC TGTTTGTTTGCTCTAGTTGGATGTTGTTTTGTCTGACTAGTGTTATTATTCTATAGGCTGGATGTCAGTATTAGC ATGGCAAGCTGGCGCAGCCTCTGGCTCATTCCTCACTGGAACTATCATCCAGGGACTGATCAGCGTGCGGAACCC GGATTACGATCCGCAGGGCTGGCAGGGCACGCTCTTCGTCTTTGCGATGGTATTGGTGATTTATATCGTCAATGT GTACGGATCTGACGTGATGCCCGTACTGAATAATTTACTGATGATTCTCCACGTTGTATCGTGGGCGGTTATTAT AATCGTCCTGTGGGTGATGGCTCCGCACCAATCCGCCGAAGCGGTGTTCGTGACGCAGTGGAAGAATTACGGCGG TTGGTCTACGATGGGACTGAGCGTGATGGTGGGACAGATCTCAGCTATCTACGGCTCTCTGAGTATGTCTGCAAG CCCGTAGCCCAGACTCCAACCTGATACTAAGTCAAAATAGGCTCCGACGCAACGGCCCACATGTCCGAAGAGGTC AAAGACGCCGCTCGATACGTGCCGATCGCCATGGCCTGGGGCTACTTTAGTAACGGCCTCATGGCGATCGTCATG ATCATCACCTATCTCTTCGCCACGCCGTCGGTCGAAGACTCGTTAAACGACGCCACGGGATTCCCATTCCTGTAT GTCTTCCAGAAGGCAACGTCTATCGCCGGAACCAATGGACTCACGGCGATTATCATCCTCCCCGTGATCTTCAGC AACATCCTCTTCAACGCCTCCACCTCCCGACAGACCTTCGCCTTTGCCCGCGACCAGGGCCTCCCATTCGCGAAA TGGATCGGCAAAGTGGATGCCCAGCGGCAGATCCCTGTGAATGCCATCGCGCTGTCCTGCGTCATCAGCTGCGCG TTATCGCTTATCAATATCGGCTCCGAGACTGCGTTCAACGCTATTATCTCGCTCAACGTGGCGGCGCTGATGTAC ACGTATATTACATCGATTAGCTGCGTGATCTACCGCAAGATCTGGTATCCTGATACCCTGCCGCCGCGTCGGTGG GATATGGGACGGTGGGGACTGGCGGTTAATATTATTGGGCTGTTTTACTGCTGTTTCGCGTTCTTCTGGTCGTTG TGGCCCGGGGATGCCGACGTCACTCTGGAGAACTTTAATTGGAGTGTGGTTATCTTTGTTGGGGTTTTTATCGTC AGCCTTGGGATGTATGTTGTCAAGGGCCGGAAGGAATATGTTGGTCCTTCTGTTATTGTGCAGAATCAGGAATGG TGA |