© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6787.t1 |
| Gene name | |
| Location | scaffold_19:36402..37592 |
| Strand | + |
| Gene length (bp) | 1190 |
| Transcript length (bp) | 942 |
| Coding sequence length (bp) | 942 |
| Protein length (aa) | 314 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13344 | Hydrolase_6 | Haloacid dehalogenase-like hydrolase | 4.9E-30 | 30 | 132 |
| PF13242 | Hydrolase_like | HAD-hyrolase-like | 5.4E-13 | 233 | 306 |
| PF00702 | Hydrolase | haloacid dehalogenase-like hydrolase | 1.5E-10 | 28 | 269 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 52 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 46.42 | 25.08 | 67.77 |
| 5d_25C | Five days - 25 degrees Celsius | 52.69 | 29.18 | 76.21 |
| 7d_25C | Seven days - 25 degrees Celsius | 51.92 | 28.62 | 75.22 |
| 10d_25C | Ten days - 25 degrees Celsius | 37.50 | 19.18 | 55.81 |
| 7d_15C | Seven days - 15 degrees Celsius | 48.91 | 26.66 | 71.17 |
| 7d_30C | Seven days - 30 degrees Celsius | 46.08 | 24.83 | 67.34 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.703919 | no |
| 3d_25C | 7d_25C | 0.740103 | no |
| 3d_25C | 7d_15C | 0.889001 | no |
| 3d_25C | 7d_30C | 0.986662 | no |
| 3d_25C | 10d_25C | 0.485456 | no |
| 5d_25C | 7d_25C | 0.971859 | no |
| 5d_25C | 7d_15C | 0.835055 | no |
| 5d_25C | 7d_30C | 0.684858 | no |
| 5d_25C | 10d_25C | 0.217002 | no |
| 7d_25C | 7d_15C | 0.869157 | no |
| 7d_25C | 7d_30C | 0.721475 | no |
| 7d_25C | 10d_25C | 0.235613 | no |
| 7d_15C | 7d_30C | 0.873977 | no |
| 7d_15C | 10d_25C | 0.352031 | no |
| 7d_30C | 10d_25C | 0.503973 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6787.t1 MAQESSQVAPRYLTGDKAGLQEFLARFDVFLFDCDGVLWSGDHLFPGTVETLELLRKNGKQIVFVTNNSTKSRAD YRKKLEGLGIPSTVEEIFSSSYSASIYISRILQLPENKRKVYVIGETGIEQELRSENVPFIGGTDPAYRRDVTSE DYNKIAAGDESVLDPEVGVVLVGLDFHVNYLKIALAYHYIKRGAIFLATNVDSTLPHSGSFFPGAGSMSAPLIMM LNQEPVALGKPSQAMMDSIEGKFKFDRSRTCMVGDRVNTDIRFGLEGKLGGTLGVLTGVSSEEEFVSGDVRPHAY LDALSDLLASEGA* |
| Coding | >Pro_DTO377G3_2|g6787.t1 ATGGCGCAAGAATCCTCGCAAGTCGCGCCCCGCTACCTGACCGGCGATAAGGCCGGCCTCCAGGAATTCCTAGCC AGATTCGATGTATTCCTCTTCGACTGTGATGGCGTCTTATGGTCCGGCGACCACCTCTTCCCCGGAACAGTAGAG ACACTGGAGCTTCTCCGAAAGAATGGGAAGCAAATCGTTTTCGTGACGAATAACAGCACCAAGTCGCGCGCAGAC TACCGCAAGAAACTCGAAGGCTTAGGGATCCCTAGTACAGTGGAAGAGATCTTCTCCTCCTCATACAGCGCCTCT ATATACATTTCGCGCATCCTCCAACTCCCCGAAAACAAGCGCAAAGTCTACGTGATCGGCGAGACAGGCATCGAG CAAGAGCTCCGCTCCGAGAATGTCCCTTTCATCGGCGGCACAGACCCTGCCTACCGCCGCGACGTCACGTCAGAG GACTACAACAAGATCGCGGCGGGCGATGAGTCCGTCCTAGACCCGGAGGTTGGTGTCGTGCTTGTCGGTCTCGAC TTCCACGTGAATTACCTCAAGATCGCGCTGGCATACCACTACATCAAGCGCGGAGCGATCTTCCTCGCCACGAAC GTCGACTCCACCCTTCCGCACTCGGGGTCTTTTTTCCCTGGCGCTGGCTCCATGAGCGCGCCGCTGATAATGATG CTGAATCAGGAACCGGTCGCTCTCGGAAAACCCAGTCAGGCTATGATGGATTCCATCGAGGGTAAGTTCAAGTTT GATCGTAGCCGGACTTGCATGGTTGGTGACCGTGTGAATACCGATATTCGCTTTGGACTTGAGGGTAAACTTGGC GGTACGCTGGGTGTCTTGACTGGTGTCTCTTCTGAGGAGGAGTTCGTGTCTGGGGATGTCAGGCCTCATGCTTAC TTGGATGCGCTTTCTGATCTACTAGCCTCGGAGGGGGCCTGA |
| Transcript | >Pro_DTO377G3_2|g6787.t1 ATGGCGCAAGAATCCTCGCAAGTCGCGCCCCGCTACCTGACCGGCGATAAGGCCGGCCTCCAGGAATTCCTAGCC AGATTCGATGTATTCCTCTTCGACTGTGATGGCGTCTTATGGTCCGGCGACCACCTCTTCCCCGGAACAGTAGAG ACACTGGAGCTTCTCCGAAAGAATGGGAAGCAAATCGTTTTCGTGACGAATAACAGCACCAAGTCGCGCGCAGAC TACCGCAAGAAACTCGAAGGCTTAGGGATCCCTAGTACAGTGGAAGAGATCTTCTCCTCCTCATACAGCGCCTCT ATATACATTTCGCGCATCCTCCAACTCCCCGAAAACAAGCGCAAAGTCTACGTGATCGGCGAGACAGGCATCGAG CAAGAGCTCCGCTCCGAGAATGTCCCTTTCATCGGCGGCACAGACCCTGCCTACCGCCGCGACGTCACGTCAGAG GACTACAACAAGATCGCGGCGGGCGATGAGTCCGTCCTAGACCCGGAGGTTGGTGTCGTGCTTGTCGGTCTCGAC TTCCACGTGAATTACCTCAAGATCGCGCTGGCATACCACTACATCAAGCGCGGAGCGATCTTCCTCGCCACGAAC GTCGACTCCACCCTTCCGCACTCGGGGTCTTTTTTCCCTGGCGCTGGCTCCATGAGCGCGCCGCTGATAATGATG CTGAATCAGGAACCGGTCGCTCTCGGAAAACCCAGTCAGGCTATGATGGATTCCATCGAGGGTAAGTTCAAGTTT GATCGTAGCCGGACTTGCATGGTTGGTGACCGTGTGAATACCGATATTCGCTTTGGACTTGAGGGTAAACTTGGC GGTACGCTGGGTGTCTTGACTGGTGTCTCTTCTGAGGAGGAGTTCGTGTCTGGGGATGTCAGGCCTCATGCTTAC TTGGATGCGCTTTCTGATCTACTAGCCTCGGAGGGGGCCTGA |
| Gene | >Pro_DTO377G3_2|g6787.t1 ATGGCGCAAGAATCCTCGCAAGTCGCGCCCCGCTACCTGACCGGCGATAAGGCCGGCCTCCAGGAATTCCTAGCC AGATTCGATGTGAGCACACGTTTTGGATCTACCGATGTACTAGAGAGTCCTGTTACTAACCAGATTCTGTACAGG TATTCCTCTTCGACTGTGATGGTCTGTCCCCTCTGTATCGGCCGAAGCTCCCCGCAGCGCTGAACGCGTCGCAAC AACCGCTGAGACAATAATATTTAGGCGTCTTATGGTCCGGCGACCACCTCTTCCCCGGAACAGTAGAGACACTGG AGCTTCTCCGAAAGAATGGTGCGCATTAAATACCAAGTGCGCAAACAGAGGTTAATAATCCCCAGGGAAGCAAAT CGTTTTCGTGACGAATAACAGCACCAAGTCGCGCGCAGACTACCGCAAGAAACTCGAAGGCTTAGGGATCCCTAG TACAGTGGTCAGTGATACCACCGATTAATCACCTCACCCAGTGGCAGCGACTCACAACCAAACAGGAAGAGATCT TCTCCTCCTCATACAGCGCCTCTATATACATTTCGCGCATCCTCCAACTCCCCGAAAACAAGCGCAAAGTCTACG TGATCGGCGAGACAGGCATCGAGCAAGAGCTCCGCTCCGAGAATGTCCCTTTCATCGGCGGCACAGACCCTGCCT ACCGCCGCGACGTCACGTCAGAGGACTACAACAAGATCGCGGCGGGCGATGAGTCCGTCCTAGACCCGGAGGTTG GTGTCGTGCTTGTCGGTCTCGACTTCCACGTGAATTACCTCAAGATCGCGCTGGCATACCACTACATCAAGCGCG GAGCGATCTTCCTCGCCACGAACGTCGACTCCACCCTTCCGCACTCGGGGTCTTTTTTCCCTGGCGCTGGCTCCA TGAGCGCGCCGCTGATAATGATGCTGAATCAGGAACCGGTCGCTCTCGGAAAACCCAGTCAGGCTATGATGGATT CCATCGAGGGTAAGTTCAAGTTTGATCGTAGCCGGACTTGCATGGTTGGTGACCGTGTGAATACCGATATTCGCT TTGGACTTGAGGGTAAACTTGGCGGTACGCTGGGTGTCTTGACTGGTGTCTCTTCTGAGGAGGAGTTCGTGTCTG GGGATGTCAGGCCTCATGCTTACTTGGATGCGCTTTCTGATCTACTAGCCTCGGAGGGGGCCTGA |