© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6770.t1 |
| Gene name | |
| Location | scaffold_18:464643..466609 |
| Strand | + |
| Gene length (bp) | 1966 |
| Transcript length (bp) | 891 |
| Coding sequence length (bp) | 891 |
| Protein length (aa) | 297 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04479 | RTA1 | RTA1 like protein | 9.0E-55 | 51 | 232 |
| PF00135 | COesterase | Carboxylesterase family | 1.7E-08 | 239 | 286 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 35 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 15 | 34 | 19 |
| 2 | 46 | 68 | 22 |
| 3 | 83 | 105 | 22 |
| 4 | 117 | 139 | 22 |
| 5 | 154 | 176 | 22 |
| 6 | 266 | 288 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6770.t1 MPELQTYKGYYLWHYVPSRAAAVIFLLLFLAATAYHTWKIWKLKTYFCICFAIGGFFEFIGYCARTSAYDKTGRM MPFCIQNVFILLGPALFAASIYMVLGRIITAVKGERHSLIPVRWLTKLFVTGDVLSFLIQGGAAGMMISSDLASI GNKLVILGLIVQVAFLGFFIVSMVMFQVRIHRHPTHEVFSEDLRWKWHLNTLYLVSLLIMVRSIFRVAEYIMGND GYLLQNDDLSAISAGGEEDCLFSDVQVPRKIFNNCQKNRRLLPVLVWIHGGGFTAGSMTSFGSPKGLIDRS* |
| Coding | >Pro_DTO377G3_2|g6770.t1 ATGCCCGAACTTCAAACGTACAAGGGTTATTATCTTTGGCATTACGTCCCCTCGAGGGCAGCAGCGGTTATTTTT CTCTTGCTCTTCCTAGCGGCGACTGCATATCACACCTGGAAAATATGGAAACTGAAGACCTATTTCTGCATTTGC TTTGCCATTGGGGGCTTCTTTGAGTTCATAGGTTACTGTGCTCGAACGTCAGCTTATGACAAGACTGGGCGAATG ATGCCCTTTTGCATCCAGAATGTCTTCATACTACTCGGCCCTGCCCTCTTCGCTGCCTCGATTTACATGGTTTTG GGCCGAATTATTACTGCAGTCAAGGGTGAAAGACATTCACTTATACCCGTTCGCTGGTTGACCAAGCTCTTTGTC ACCGGCGATGTCTTGTCTTTTTTAATCCAGGGCGGTGCCGCTGGCATGATGATCTCCAGTGACCTTGCTAGCATC GGAAATAAGCTTGTCATTCTTGGTCTGATTGTCCAGGTCGCTTTCCTCGGATTCTTCATTGTTAGCATGGTGATG TTTCAGGTCCGAATTCATAGACACCCAACGCACGAGGTCTTTTCTGAAGATTTACGATGGAAGTGGCACCTCAAT ACCCTGTACCTAGTCAGTCTGTTGATCATGGTCCGGTCTATATTCAGAGTTGCAGAGTACATTATGGGTAATGAT GGATACCTGCTACAAAATGACGACTTGTCCGCGATCTCCGCCGGTGGAGAGGAGGACTGTCTGTTTTCGGATGTC CAAGTGCCTCGCAAAATATTTAATAACTGCCAGAAGAATAGAAGATTGTTACCTGTTCTTGTTTGGATTCATGGC GGAGGCTTTACTGCCGGGTCTATGACGTCTTTTGGATCACCTAAGGGCTTGATTGATCGCAGCTAA |
| Transcript | >Pro_DTO377G3_2|g6770.t1 ATGCCCGAACTTCAAACGTACAAGGGTTATTATCTTTGGCATTACGTCCCCTCGAGGGCAGCAGCGGTTATTTTT CTCTTGCTCTTCCTAGCGGCGACTGCATATCACACCTGGAAAATATGGAAACTGAAGACCTATTTCTGCATTTGC TTTGCCATTGGGGGCTTCTTTGAGTTCATAGGTTACTGTGCTCGAACGTCAGCTTATGACAAGACTGGGCGAATG ATGCCCTTTTGCATCCAGAATGTCTTCATACTACTCGGCCCTGCCCTCTTCGCTGCCTCGATTTACATGGTTTTG GGCCGAATTATTACTGCAGTCAAGGGTGAAAGACATTCACTTATACCCGTTCGCTGGTTGACCAAGCTCTTTGTC ACCGGCGATGTCTTGTCTTTTTTAATCCAGGGCGGTGCCGCTGGCATGATGATCTCCAGTGACCTTGCTAGCATC GGAAATAAGCTTGTCATTCTTGGTCTGATTGTCCAGGTCGCTTTCCTCGGATTCTTCATTGTTAGCATGGTGATG TTTCAGGTCCGAATTCATAGACACCCAACGCACGAGGTCTTTTCTGAAGATTTACGATGGAAGTGGCACCTCAAT ACCCTGTACCTAGTCAGTCTGTTGATCATGGTCCGGTCTATATTCAGAGTTGCAGAGTACATTATGGGTAATGAT GGATACCTGCTACAAAATGACGACTTGTCCGCGATCTCCGCCGGTGGAGAGGAGGACTGTCTGTTTTCGGATGTC CAAGTGCCTCGCAAAATATTTAATAACTGCCAGAAGAATAGAAGATTGTTACCTGTTCTTGTTTGGATTCATGGC GGAGGCTTTACTGCCGGGTCTATGACGTCTTTTGGATCACCTAAGGGCTTGATTGATCGCAGCTAA |
| Gene | >Pro_DTO377G3_2|g6770.t1 ATGCCCGAACTTCAAACGTACAAGGGTTATTATCTTTGGCATTACGTCCCCTCGAGGGCAGCAGCGGTTATTTTT CTCTTGCTCTTCCTAGCGGCGACTGCATATCACACCTGGAAAATATGGAAACTGAAGACCTATTTCTGCATTTGC TTTGCCATTGGGGGCTTCTGTAGGTACACTTGGACATTTACTATTAGCTCATAGAGACTGAGACATGCTAATAAT ACCAGTTGAGTTCATAGGTTACTGTGCTCGAACGTCAGCTTATGACAAGACTGGGCGAATGATGCCCTTTTGCAT CCAGAATGTCTTCATACTACTCGGCCCTGCCCTCTTCGCTGCCTCGATTTACATGGTTTTGGGCCGAATTATTAC TGCAGTCAAGGGTGAAAGACATTCACTTATACCCGTTCGCTGGTTGACCAAGCTCTTTGTCACCGGCGATGTCTT GTCTTTTTTAATCCAGGGCGGTGCCGCTGGCATGATGATCTCCAGTGACCTTGCTAGCATCGGAAATAAGCTTGT CATTCTTGGTCTGATTGTCCAGGTCGCTTTCCTCGGATTCTTCATTGTTAGCATGGTGATGTTTCAGGTCCGAAT TCATAGACACCCAACGCACGAGGTCTTTTCTGAAGATTTACGATGGAAGTGGCACCTCAATACCCTGTACCTAGT CAGTCTGTTGATCATGGTCCGGTCTATATTCAGAGTTGCAGAGTACATTATGGGTAATGATGGATACCTGCTACA AAATGAGTGGCCGGCATATGTATTCGACGCGACTCTCATGTGGATAGTGATGGTGACATTTGGAGTCAGGTTTCC CAGCGAGGTATACGCATGTTCGCATGTTCCTGGAAGGGTCAATTTGAACGAGATGGGAGCAATGGTATAAAGTCC GTGAATTATGTTTCTGCTACTCAGGTACTTTCTGCTACAGTTACCTACTTGGAAAAATGCTGGAGACGTGCTTTT TAATTCTGTATGCCACTGGCGGATGTAATGAAAGTTAAGGGGCAAATCTCTATACGTGTATTCGTTCTCGGGTCA AGTGGGCCAAGCATGATTTCGTGCAGATCCTCTTGTACACACGTATTCATGTTCGGCCTTCATGGTCAAGAATTG GCCTCTGACAATTATAAATTGCCCCTTTTCGTACCGTTAAACGAGATAAATTCGTCATGAGTTCCACATAGGGAA TTTTCGGCTTAGCTCTTGCCATCATTCTCCAGCTAGTCCAAATATAAATACACCGGCCGGGGGGGTCAGAGCCTT CCCTAAAGAACCTATGTAATTGCGACCAACAATGGTTGGAGTTAAACAAACTTTATAGTTGGGTTGTATGCTAGT TGCAGTTCACGCTGACTGCGCCAAAAAGGAACAGCCTATAGTGGATCTAGGCTATGAGATCTACCAGGCGACCGG AGCGAATAATATAAGATCCTACCATGCTGCGATTTCAAACTGCTTGCTTCAACAAAATCTAATGATAAGTCAAGC ATTCCGATAGTCATTACAGCTTCTCTAACATCCGATATGCCGCTCCCCCGGTTGGTAACCTTCGCTGGAAAGCTC CTATGTTACCCCTAACCAACCGATCGGTCATCCAGTCCAACCCAGAGTCGATTTCCTGTCCCTATGGAATAAGCA GTTGGCAGTTACGTACCTCACAATACATAAACGAGTATTTGAAGACTGGGAATTTCCCTAATGTCTCTTACAGCG ACTTGTCCGCGATCTCCGCCGGTGGAGAGGAGGACTGTCTGTTTTCGGATGTCCAAGTGCCTCGCAAAATATTTA ATAACTGCCAGAAGAATAGAAGATTGTTACCTGTTCTTGTTTGGATTCATGGTAATCACCTACTATTCTTCATTA ATGAGAAATGCTAATTGACTAAGGCGGAGGCTTTACTGCCGGGTCTATGACGTCTTTTGGATCACCTAAGGGCTT GATTGATCGCAGCTAA |