© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6768.t1 |
| Gene name | |
| Location | scaffold_18:460355..461942 |
| Strand | - |
| Gene length (bp) | 1587 |
| Transcript length (bp) | 1587 |
| Coding sequence length (bp) | 1587 |
| Protein length (aa) | 529 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07519 | Tannase | Tannase and feruloyl esterase | 3.1E-94 | 74 | 526 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 26 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 6.97 | 2.66 | 11.29 |
| 5d_25C | Five days - 25 degrees Celsius | 6.73 | 2.54 | 10.92 |
| 7d_25C | Seven days - 25 degrees Celsius | 7.72 | 3.03 | 12.41 |
| 10d_25C | Ten days - 25 degrees Celsius | 8.29 | 3.36 | 13.21 |
| 7d_15C | Seven days - 15 degrees Celsius | 7.71 | 3.05 | 12.38 |
| 7d_30C | Seven days - 30 degrees Celsius | 8.87 | 3.66 | 14.08 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.947640 | no |
| 3d_25C | 7d_25C | 0.830618 | no |
| 3d_25C | 7d_15C | 0.833766 | no |
| 3d_25C | 7d_30C | 0.539349 | no |
| 3d_25C | 10d_25C | 0.686099 | no |
| 5d_25C | 7d_25C | 0.767240 | no |
| 5d_25C | 7d_15C | 0.766262 | no |
| 5d_25C | 7d_30C | 0.468993 | no |
| 5d_25C | 10d_25C | 0.608646 | no |
| 7d_25C | 7d_15C | 0.998280 | no |
| 7d_25C | 7d_30C | 0.757973 | no |
| 7d_25C | 10d_25C | 0.887530 | no |
| 7d_15C | 7d_30C | 0.756899 | no |
| 7d_15C | 10d_25C | 0.885104 | no |
| 7d_30C | 10d_25C | 0.888320 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6768.t1 MNMKMAVFSRTLLSLSAIFVEIASASRCSPSLIEKPKLSGTSILDVQAQEALNFSAVSLGPGTNEGGRYTISFCN VTVTHTHPGWNDTITTQVWLPLEGWNGRFQGLGGGGYATGFGETYLTYAVSRGFASASTNGGLPVANGKDTIPTD LSWALNSENNVNWFFLEDYASKATNDMAVIGQQITKSYYKKPANYSYFAGCSGGGRQGLLMAQKYPDVFDGILAV APALDIQRFIPAGFWASQVMNQLGVYPSPCEVNAFTEAAVKACDRLDGVEDGIISSPDHCHVKAADFVGMSYTCD SIRKTFSASSAEVIQAAWSGSRSISKHDGWYGVNKDAALGTAYVPTACSAKNACYSFGSDLFGNWLKYLVAKDST FSTSNMTQEEFFKGLRSSNVDYSGMLGTNDPDLSNFKAKGGKMITWQGMADEAIPPLGTIAYYEEVLKNDPKAQD FYRFFEAPGVGHCYGGPGPIPNGAMSQLVEWVENGHAPVVLHATKGSNNTARDLCPYPLRQKYVGGDSRNATSFT CTK* |
| Coding | >Pro_DTO377G3_2|g6768.t1 ATGAATATGAAGATGGCGGTCTTCTCCCGCACCTTGCTCTCCCTGAGCGCTATTTTTGTTGAGATAGCGTCCGCT TCCAGATGTTCGCCAAGCTTGATCGAGAAGCCAAAATTGTCTGGTACTTCAATCCTCGATGTTCAAGCCCAGGAA GCCCTCAACTTTTCTGCCGTTAGCCTTGGACCAGGGACTAACGAAGGCGGCCGATATACAATCAGCTTCTGCAAT GTTACCGTTACCCACACACATCCTGGCTGGAATGACACAATTACTACTCAAGTATGGCTCCCACTTGAGGGATGG AATGGAAGGTTTCAAGGCTTAGGTGGCGGAGGCTACGCTACAGGCTTTGGCGAAACTTACCTAACATACGCTGTG TCGCGAGGATTCGCATCTGCCTCTACGAATGGAGGCCTACCTGTGGCGAATGGGAAAGATACTATACCTACAGAC CTGTCATGGGCTCTGAACAGCGAAAACAATGTGAACTGGTTCTTCCTAGAGGATTACGCATCGAAGGCAACGAAC GACATGGCTGTGATTGGACAGCAGATCACCAAATCCTACTACAAAAAACCCGCAAACTATTCATATTTTGCCGGA TGCTCTGGTGGTGGAAGGCAGGGCCTCTTGATGGCACAGAAGTACCCGGACGTTTTTGATGGCATTTTAGCCGTC GCTCCGGCCCTTGATATACAACGTTTCATCCCTGCAGGCTTCTGGGCCTCACAAGTCATGAACCAACTTGGAGTT TATCCATCGCCCTGTGAGGTCAATGCTTTCACGGAAGCAGCCGTGAAGGCTTGCGATCGACTAGATGGGGTTGAA GACGGCATCATTAGCTCCCCAGATCACTGTCACGTCAAGGCTGCCGACTTTGTTGGGATGAGCTACACTTGCGAC AGCATTCGGAAAACCTTCAGTGCTTCCAGCGCGGAAGTTATCCAAGCGGCTTGGTCCGGTTCTCGCTCTATCTCA AAGCACGATGGCTGGTACGGGGTCAACAAGGATGCAGCGCTCGGCACTGCCTATGTGCCTACCGCATGCTCTGCG AAAAACGCATGTTACTCTTTTGGAAGCGACTTGTTTGGCAACTGGCTCAAGTATCTTGTTGCTAAGGACTCGACC TTTTCAACCAGCAATATGACTCAGGAGGAGTTCTTCAAAGGCCTACGCTCTTCAAACGTTGATTATTCAGGGATG CTAGGAACGAATGACCCTGATCTCTCCAACTTCAAGGCAAAAGGTGGCAAAATGATCACTTGGCAGGGAATGGCA GACGAAGCTATTCCACCGCTTGGGACTATTGCCTACTATGAGGAAGTGCTGAAGAACGACCCAAAAGCTCAGGAC TTCTATCGCTTCTTCGAAGCACCTGGTGTTGGTCACTGTTACGGTGGACCCGGGCCTATTCCGAACGGAGCAATG TCCCAACTGGTTGAATGGGTCGAGAACGGACATGCCCCTGTTGTTCTGCATGCCACCAAAGGTAGCAACAATACA GCCAGAGACCTTTGCCCATATCCTCTTCGGCAAAAGTACGTTGGAGGAGATTCTAGAAATGCGACCTCTTTCACC TGCACCAAATAA |
| Transcript | >Pro_DTO377G3_2|g6768.t1 ATGAATATGAAGATGGCGGTCTTCTCCCGCACCTTGCTCTCCCTGAGCGCTATTTTTGTTGAGATAGCGTCCGCT TCCAGATGTTCGCCAAGCTTGATCGAGAAGCCAAAATTGTCTGGTACTTCAATCCTCGATGTTCAAGCCCAGGAA GCCCTCAACTTTTCTGCCGTTAGCCTTGGACCAGGGACTAACGAAGGCGGCCGATATACAATCAGCTTCTGCAAT GTTACCGTTACCCACACACATCCTGGCTGGAATGACACAATTACTACTCAAGTATGGCTCCCACTTGAGGGATGG AATGGAAGGTTTCAAGGCTTAGGTGGCGGAGGCTACGCTACAGGCTTTGGCGAAACTTACCTAACATACGCTGTG TCGCGAGGATTCGCATCTGCCTCTACGAATGGAGGCCTACCTGTGGCGAATGGGAAAGATACTATACCTACAGAC CTGTCATGGGCTCTGAACAGCGAAAACAATGTGAACTGGTTCTTCCTAGAGGATTACGCATCGAAGGCAACGAAC GACATGGCTGTGATTGGACAGCAGATCACCAAATCCTACTACAAAAAACCCGCAAACTATTCATATTTTGCCGGA TGCTCTGGTGGTGGAAGGCAGGGCCTCTTGATGGCACAGAAGTACCCGGACGTTTTTGATGGCATTTTAGCCGTC GCTCCGGCCCTTGATATACAACGTTTCATCCCTGCAGGCTTCTGGGCCTCACAAGTCATGAACCAACTTGGAGTT TATCCATCGCCCTGTGAGGTCAATGCTTTCACGGAAGCAGCCGTGAAGGCTTGCGATCGACTAGATGGGGTTGAA GACGGCATCATTAGCTCCCCAGATCACTGTCACGTCAAGGCTGCCGACTTTGTTGGGATGAGCTACACTTGCGAC AGCATTCGGAAAACCTTCAGTGCTTCCAGCGCGGAAGTTATCCAAGCGGCTTGGTCCGGTTCTCGCTCTATCTCA AAGCACGATGGCTGGTACGGGGTCAACAAGGATGCAGCGCTCGGCACTGCCTATGTGCCTACCGCATGCTCTGCG AAAAACGCATGTTACTCTTTTGGAAGCGACTTGTTTGGCAACTGGCTCAAGTATCTTGTTGCTAAGGACTCGACC TTTTCAACCAGCAATATGACTCAGGAGGAGTTCTTCAAAGGCCTACGCTCTTCAAACGTTGATTATTCAGGGATG CTAGGAACGAATGACCCTGATCTCTCCAACTTCAAGGCAAAAGGTGGCAAAATGATCACTTGGCAGGGAATGGCA GACGAAGCTATTCCACCGCTTGGGACTATTGCCTACTATGAGGAAGTGCTGAAGAACGACCCAAAAGCTCAGGAC TTCTATCGCTTCTTCGAAGCACCTGGTGTTGGTCACTGTTACGGTGGACCCGGGCCTATTCCGAACGGAGCAATG TCCCAACTGGTTGAATGGGTCGAGAACGGACATGCCCCTGTTGTTCTGCATGCCACCAAAGGTAGCAACAATACA GCCAGAGACCTTTGCCCATATCCTCTTCGGCAAAAGTACGTTGGAGGAGATTCTAGAAATGCGACCTCTTTCACC TGCACCAAATAA |
| Gene | >Pro_DTO377G3_2|g6768.t1 ATGAATATGAAGATGGCGGTCTTCTCCCGCACCTTGCTCTCCCTGAGCGCTATTTTTGTTGAGATAGCGTCCGCT TCCAGATGTTCGCCAAGCTTGATCGAGAAGCCAAAATTGTCTGGTACTTCAATCCTCGATGTTCAAGCCCAGGAA GCCCTCAACTTTTCTGCCGTTAGCCTTGGACCAGGGACTAACGAAGGCGGCCGATATACAATCAGCTTCTGCAAT GTTACCGTTACCCACACACATCCTGGCTGGAATGACACAATTACTACTCAAGTATGGCTCCCACTTGAGGGATGG AATGGAAGGTTTCAAGGCTTAGGTGGCGGAGGCTACGCTACAGGCTTTGGCGAAACTTACCTAACATACGCTGTG TCGCGAGGATTCGCATCTGCCTCTACGAATGGAGGCCTACCTGTGGCGAATGGGAAAGATACTATACCTACAGAC CTGTCATGGGCTCTGAACAGCGAAAACAATGTGAACTGGTTCTTCCTAGAGGATTACGCATCGAAGGCAACGAAC GACATGGCTGTGATTGGACAGCAGATCACCAAATCCTACTACAAAAAACCCGCAAACTATTCATATTTTGCCGGA TGCTCTGGTGGTGGAAGGCAGGGCCTCTTGATGGCACAGAAGTACCCGGACGTTTTTGATGGCATTTTAGCCGTC GCTCCGGCCCTTGATATACAACGTTTCATCCCTGCAGGCTTCTGGGCCTCACAAGTCATGAACCAACTTGGAGTT TATCCATCGCCCTGTGAGGTCAATGCTTTCACGGAAGCAGCCGTGAAGGCTTGCGATCGACTAGATGGGGTTGAA GACGGCATCATTAGCTCCCCAGATCACTGTCACGTCAAGGCTGCCGACTTTGTTGGGATGAGCTACACTTGCGAC AGCATTCGGAAAACCTTCAGTGCTTCCAGCGCGGAAGTTATCCAAGCGGCTTGGTCCGGTTCTCGCTCTATCTCA AAGCACGATGGCTGGTACGGGGTCAACAAGGATGCAGCGCTCGGCACTGCCTATGTGCCTACCGCATGCTCTGCG AAAAACGCATGTTACTCTTTTGGAAGCGACTTGTTTGGCAACTGGCTCAAGTATCTTGTTGCTAAGGACTCGACC TTTTCAACCAGCAATATGACTCAGGAGGAGTTCTTCAAAGGCCTACGCTCTTCAAACGTTGATTATTCAGGGATG CTAGGAACGAATGACCCTGATCTCTCCAACTTCAAGGCAAAAGGTGGCAAAATGATCACTTGGCAGGGAATGGCA GACGAAGCTATTCCACCGCTTGGGACTATTGCCTACTATGAGGAAGTGCTGAAGAACGACCCAAAAGCTCAGGAC TTCTATCGCTTCTTCGAAGCACCTGGTGTTGGTCACTGTTACGGTGGACCCGGGCCTATTCCGAACGGAGCAATG TCCCAACTGGTTGAATGGGTCGAGAACGGACATGCCCCTGTTGTTCTGCATGCCACCAAAGGTAGCAACAATACA GCCAGAGACCTTTGCCCATATCCTCTTCGGCAAAAGTACGTTGGAGGAGATTCTAGAAATGCGACCTCTTTCACC TGCACCAAATAA |