© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6759.t1 |
| Gene name | |
| Location | scaffold_18:422862..425378 |
| Strand | - |
| Gene length (bp) | 2516 |
| Transcript length (bp) | 2001 |
| Coding sequence length (bp) | 2001 |
| Protein length (aa) | 667 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00732 | GMC_oxred_N | GMC oxidoreductase | 3.1E-76 | 7 | 310 |
| PF05199 | GMC_oxred_C | GMC oxidoreductase | 2.0E-35 | 427 | 632 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | Yes |
| GO:0050660 | flavin adenine dinucleotide binding | Yes |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0043168 | anion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0036094 | small molecule binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 39 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 16.68 | 8.76 | 24.60 |
| 5d_25C | Five days - 25 degrees Celsius | 24.28 | 13.47 | 35.10 |
| 7d_25C | Seven days - 25 degrees Celsius | 13.04 | 6.37 | 19.72 |
| 10d_25C | Ten days - 25 degrees Celsius | 5.97 | 2.35 | 9.59 |
| 7d_15C | Seven days - 15 degrees Celsius | 9.65 | 4.34 | 14.96 |
| 7d_30C | Seven days - 30 degrees Celsius | 16.55 | 8.59 | 24.52 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.145733 | no |
| 3d_25C | 7d_25C | 0.433525 | no |
| 3d_25C | 7d_15C | 0.043201 | yes |
| 3d_25C | 7d_30C | 0.986425 | no |
| 3d_25C | 10d_25C | 0.001278 | yes |
| 5d_25C | 7d_25C | 0.009446 | yes |
| 5d_25C | 7d_15C | 0.000700 | yes |
| 5d_25C | 7d_30C | 0.137757 | no |
| 5d_25C | 10d_25C | 0.000700 | yes |
| 7d_25C | 7d_15C | 0.336719 | no |
| 7d_25C | 7d_30C | 0.445742 | no |
| 7d_25C | 10d_25C | 0.010083 | yes |
| 7d_15C | 7d_30C | 0.045756 | yes |
| 7d_15C | 10d_25C | 0.142592 | no |
| 7d_30C | 10d_25C | 0.001278 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6759.t1 MTIPDEVDIIICGGGSSGCVPAGRLANLDHNLSVLLIEAGEDNLNNQWVYRPGIYPNNMKLDSKTASFYHSRPSE HLDGRQAIVPCANILGGGSSINFMMYTRASASDYDDFQAKGWTTKELLPLMRKHETYQRASNNPELHGTDGPIKV SFGNYTYPIKNDFLRAAETQGIPFTDDLQDLKTAHGSEHWLKWINRDTGRRSDAAHAYVHSTRAKHNNLHLQCNT KVEKVIVENGRAVGVVTVPTKPLDGGEPVRRVFKARKQIIISSGTLSSPLILQRSGFGDPEKLRRAGVKPLVNLP GVGRNFQDHYLTFSVYRAKPDVESFDDFIRGDPKVQKKVFDEWDKKGTGPLATNGIDAGVKIRPTEQELGEMKKW PTPDFTEGYESYFRNKPDKPVMHYSIISGWFGDHMHMPPGKFFTMFHFLEYPFSRGHTHIQSADPYEVPDFDAGF MNDKRDMAPLVWGYIKSRETARRMGSYAGEVTAMHPQFAFNSSARAQDMDLATTKAYAGSNHISAGIQHGSWTTP LEPGKQPSASTLNSNRHEARPSLEYTNEDIQHIEKWISRHVETTWHCLGTCSMAPREGNSIAPHGGVVDERLNVH GVKGLKVCDLSICPDNVGCNTFSTALLIGEKCAVLVAEDLGYSGADLDMKIPTYHAPAEFSNLSRL* |
| Coding | >Pro_DTO377G3_2|g6759.t1 ATGACTATCCCAGACGAAGTTGATATCATCATCTGCGGTGGCGGCAGCTCGGGATGTGTCCCTGCGGGCCGCCTC GCGAATCTTGATCACAACCTGTCTGTTTTGTTGATTGAGGCAGGCGAGGATAACTTGAACAATCAATGGGTGTAC CGCCCGGGTATATACCCGAACAACATGAAGCTTGATTCAAAGACGGCATCATTCTATCACTCCAGGCCATCTGAG CATTTAGATGGTCGCCAGGCTATTGTTCCATGTGCCAACATTCTTGGAGGTGGCAGTTCTATCAACTTTATGATG TATACCAGAGCATCCGCGTCCGATTATGACGACTTTCAAGCAAAGGGTTGGACAACCAAGGAACTTCTTCCATTG ATGAGGAAGCACGAAACATACCAACGTGCGAGCAATAACCCGGAATTGCATGGCACTGACGGACCCATCAAGGTT TCATTTGGGAACTATACGTATCCGATCAAGAATGACTTCCTTCGTGCTGCTGAGACGCAAGGAATTCCATTCACT GATGACCTGCAAGACTTGAAAACTGCCCACGGTTCGGAACACTGGTTGAAGTGGATCAACCGTGATACGGGACGA CGAAGTGATGCAGCCCACGCCTATGTCCACAGCACCCGAGCCAAGCATAATAATCTCCATCTCCAATGCAATACC AAAGTTGAGAAGGTGATTGTTGAAAATGGTCGTGCCGTGGGAGTTGTGACAGTCCCAACTAAGCCTCTTGACGGC GGAGAGCCAGTTCGCAGGGTCTTCAAGGCCCGAAAGCAAATCATTATTAGTTCGGGTACACTGAGTTCTCCACTG ATTCTCCAGCGGTCCGGCTTTGGTGATCCTGAGAAGCTGCGCCGGGCTGGGGTCAAGCCCCTGGTCAACCTACCA GGCGTCGGCCGAAACTTCCAGGACCACTACCTTACTTTCTCCGTTTATCGCGCTAAGCCCGACGTCGAGTCCTTT GACGACTTCATTCGTGGAGATCCCAAAGTTCAAAAAAAGGTCTTCGATGAATGGGATAAGAAGGGCACCGGTCCA TTGGCCACTAACGGTATCGATGCCGGGGTCAAGATTCGGCCTACGGAGCAAGAGCTCGGCGAGATGAAGAAGTGG CCTACCCCAGACTTTACAGAGGGGTATGAGTCGTATTTCAGGAACAAGCCTGATAAGCCTGTCATGCATTACTCG ATCATTTCTGGCTGGTTCGGAGACCACATGCACATGCCTCCGGGCAAGTTCTTTACCATGTTCCATTTCCTGGAA TACCCCTTCTCGCGCGGTCACACCCACATCCAGTCGGCTGACCCTTACGAAGTCCCGGACTTTGATGCAGGTTTC ATGAATGACAAACGTGACATGGCACCTCTGGTCTGGGGATATATTAAATCTCGTGAGACCGCCCGGCGCATGGGT TCGTACGCTGGAGAGGTCACTGCCATGCATCCTCAGTTCGCCTTCAACTCATCGGCACGGGCGCAAGATATGGAT TTGGCCACTACCAAGGCATATGCCGGCTCCAACCATATTTCTGCTGGTATTCAACACGGTTCTTGGACCACTCCA TTGGAACCCGGAAAGCAGCCTTCGGCTTCAACTCTCAACTCCAATAGACACGAAGCTCGTCCTTCGCTGGAGTAC ACCAATGAAGATATCCAGCACATTGAGAAGTGGATTTCCCGCCACGTTGAGACAACTTGGCATTGCCTTGGCACA TGCAGTATGGCTCCGCGAGAGGGTAATTCCATTGCACCCCATGGAGGTGTCGTTGACGAGCGCCTCAATGTGCAT GGTGTCAAGGGCCTCAAGGTTTGCGACTTGTCTATCTGCCCCGACAATGTGGGCTGCAACACTTTCAGCACCGCT CTCCTTATCGGTGAAAAGTGCGCAGTCTTGGTTGCGGAGGACCTTGGCTATTCTGGGGCCGATCTGGATATGAAG ATCCCTACTTACCATGCTCCAGCAGAATTCTCCAATCTTTCTCGCCTTTGA |
| Transcript | >Pro_DTO377G3_2|g6759.t1 ATGACTATCCCAGACGAAGTTGATATCATCATCTGCGGTGGCGGCAGCTCGGGATGTGTCCCTGCGGGCCGCCTC GCGAATCTTGATCACAACCTGTCTGTTTTGTTGATTGAGGCAGGCGAGGATAACTTGAACAATCAATGGGTGTAC CGCCCGGGTATATACCCGAACAACATGAAGCTTGATTCAAAGACGGCATCATTCTATCACTCCAGGCCATCTGAG CATTTAGATGGTCGCCAGGCTATTGTTCCATGTGCCAACATTCTTGGAGGTGGCAGTTCTATCAACTTTATGATG TATACCAGAGCATCCGCGTCCGATTATGACGACTTTCAAGCAAAGGGTTGGACAACCAAGGAACTTCTTCCATTG ATGAGGAAGCACGAAACATACCAACGTGCGAGCAATAACCCGGAATTGCATGGCACTGACGGACCCATCAAGGTT TCATTTGGGAACTATACGTATCCGATCAAGAATGACTTCCTTCGTGCTGCTGAGACGCAAGGAATTCCATTCACT GATGACCTGCAAGACTTGAAAACTGCCCACGGTTCGGAACACTGGTTGAAGTGGATCAACCGTGATACGGGACGA CGAAGTGATGCAGCCCACGCCTATGTCCACAGCACCCGAGCCAAGCATAATAATCTCCATCTCCAATGCAATACC AAAGTTGAGAAGGTGATTGTTGAAAATGGTCGTGCCGTGGGAGTTGTGACAGTCCCAACTAAGCCTCTTGACGGC GGAGAGCCAGTTCGCAGGGTCTTCAAGGCCCGAAAGCAAATCATTATTAGTTCGGGTACACTGAGTTCTCCACTG ATTCTCCAGCGGTCCGGCTTTGGTGATCCTGAGAAGCTGCGCCGGGCTGGGGTCAAGCCCCTGGTCAACCTACCA GGCGTCGGCCGAAACTTCCAGGACCACTACCTTACTTTCTCCGTTTATCGCGCTAAGCCCGACGTCGAGTCCTTT GACGACTTCATTCGTGGAGATCCCAAAGTTCAAAAAAAGGTCTTCGATGAATGGGATAAGAAGGGCACCGGTCCA TTGGCCACTAACGGTATCGATGCCGGGGTCAAGATTCGGCCTACGGAGCAAGAGCTCGGCGAGATGAAGAAGTGG CCTACCCCAGACTTTACAGAGGGGTATGAGTCGTATTTCAGGAACAAGCCTGATAAGCCTGTCATGCATTACTCG ATCATTTCTGGCTGGTTCGGAGACCACATGCACATGCCTCCGGGCAAGTTCTTTACCATGTTCCATTTCCTGGAA TACCCCTTCTCGCGCGGTCACACCCACATCCAGTCGGCTGACCCTTACGAAGTCCCGGACTTTGATGCAGGTTTC ATGAATGACAAACGTGACATGGCACCTCTGGTCTGGGGATATATTAAATCTCGTGAGACCGCCCGGCGCATGGGT TCGTACGCTGGAGAGGTCACTGCCATGCATCCTCAGTTCGCCTTCAACTCATCGGCACGGGCGCAAGATATGGAT TTGGCCACTACCAAGGCATATGCCGGCTCCAACCATATTTCTGCTGGTATTCAACACGGTTCTTGGACCACTCCA TTGGAACCCGGAAAGCAGCCTTCGGCTTCAACTCTCAACTCCAATAGACACGAAGCTCGTCCTTCGCTGGAGTAC ACCAATGAAGATATCCAGCACATTGAGAAGTGGATTTCCCGCCACGTTGAGACAACTTGGCATTGCCTTGGCACA TGCAGTATGGCTCCGCGAGAGGGTAATTCCATTGCACCCCATGGAGGTGTCGTTGACGAGCGCCTCAATGTGCAT GGTGTCAAGGGCCTCAAGGTTTGCGACTTGTCTATCTGCCCCGACAATGTGGGCTGCAACACTTTCAGCACCGCT CTCCTTATCGGTGAAAAGTGCGCAGTCTTGGTTGCGGAGGACCTTGGCTATTCTGGGGCCGATCTGGATATGAAG ATCCCTACTTACCATGCTCCAGCAGAATTCTCCAATCTTTCTCGCCTTTGA |
| Gene | >Pro_DTO377G3_2|g6759.t1 ATGACTATCCCAGACGAAGTTGATATCATCATCTGCGGTGGCGGCAGCTCGGGATGTGTCCCTGCGGGCCGCCTC GCGAATCTTGATCACAACCTGTCTGTTTTGTTGATTGAGGCAGGCGAGGATAACTTGAACAATCAATGGTGAGAA TGCCGAGGCTACCAGTCTTAATGAACGTATTCTCATTTCAACCTAGGGTGTACCGCCCGGGTATATACCCGAACA ACATGAAGCTTGATTCAAAGACGGCATCATTCTATCACTCCAGGCCATCTGAGCATTTAGATGGTCGCCAGGCTA TTGTTCCATGTGCCAACATTCTTGGAGGTGGCAGTTCTATCAACTTTATGGTAAGTGATACCAATCTGACAGTTT GACTCAGTGATCCTAAGCTGAATACATTAAAGATGTATACCAGAGCATCCGCGTCCGATTATGACGACTTTCAAG CAAAGGGTTGGACAACCAAGGAACTTCTTCCATTGATGAGGAAGCACGAAACATACCAACGTGCGAGCAATAACC CGGAATTGCATGGCACTGACGGACCCATCAAGGTTTCATTTGGGAACTATACGTATCCGATCAAGAATGACTTCC TTCGTGCTGCTGAGACGCAAGGAATTCCATTCACTGATGACCTGCAAGACTTGAAAACTGCGTACGAGCTCCACG ATAGATCTCCTATTCTATCTTACTAACGAAGAGTCGTAATGTTACAGCCACGGTTCGGAACACTGGTTGAAGTGG ATCAACCGTGATACGGGTAAGAACGAAGATCCAACTTTGCATCGGTATCATTACCTCTCTCACACTCAGTATTAG GACGACGAAGTGATGCAGCCCACGCCTATGTCCACAGCACCCGAGCCAAGCATAATAATCTCCATCTCCAATGCA ATACCAAAGTTGAGAAGGTGATTGTTGAAAATGGTCGTGCCGTGGGAGTTGTGACAGTCCCAACTAAGCCTCTTG ACGGCGGAGAGCCAGTTCGCAGGGTCTTCAAGGCCCGAAAGCAAATCATTATTAGTTCGGGTACACTGAGTTCTC CACTGATTCTCCAGCGGTCCGGCTTTGGTGATCCTGAGAAGCTGCGCCGGGCTGGGGTCAAGCCCCTGGTCAACC TACCAGGCGTCGGCCGAAACTTCCAGGACCACTACCTTACTTTCTCCGTTTATCGCGCTAAGCCCGACGTCGAGT CCTTTGACGACTTCATTCGTGGAGATCCCAAAGTTCAAAAAAAGGTCTTCGATGAATGGGATAAGAAGGGCACCG GTCCATTGGCCACTAACGGTATCGATGCCGGGGTCAAGATTCGGCCTACGGAGCAAGAGCTCGGCGAGATGAAGA AGTGGCCTACCCCAGACTTTACAGAGGGGTATGAGTCGTATTTCAGGAACAAGCCTGATAAGCCTGTCATGCATT ACTCGATCATTTCTGGGTAAGCACCTCATTCGCTTCGTTTTGAATGCCACGAGGCTAACCCACGGATAGCTGGTT CGGAGACCACATGCACATGCCTCCGGGCAAGTTCTTTACCATGTTCCATTTCCTGGTATGGTTCAAAGTCACCAA ATCAGATCAGCCAAAGCTGACAACATAATAGGAATACCCCTTCTCGCGCGGTCACACCCACATCCAGTCGGCTGA CCCTTACGAAGTCCCGGACTTTGATGCAGGTTTCATGAATGACAAACGTGACATGGCACCTCTGGTCTGGGGATA TATTAAATCTCGTGAGACCGCCCGGCGCATGGGTTCGTACGCTGGAGAGGTCACTGCCATGCATCCTCAGTTCGC CTTCAACTCATCGGCACGGGCGCAAGATATGGATTTGGCCACTACCAAGGCATATGCCGGCTCCAACCATATTTC TGCTGGTATTCAACACGGTATAGTCTTCCTTTCCAGTCGAGTTATCCCGTCCGTCTAGCTAATCAAATAATATAG GTTCTTGGACCACTCCATTGGAACCCGGAAAGCAGCCTTCGGCTTCAACTCTCAACTCCAATAGACACGAAGCTC GTCCTTCGCTGGAGTACACCAATGAAGATATCCAGCACATTGAGAAGTGGAGTAAGTATCAAGCATAGTAATTGG TAGCCCCGGATCATATTGTCTAACGCTTTTGCTGCAGTTTCCCGCCACGTTGAGACAACTTGGCATTGCCTTGGC ACATGCAGTATGGCTCCGCGAGAGGGTAATTCCATTGCACCCCATGGAGGTGTCGTTGACGAGCGCCTCAATGTG CATGGTGTCAAGGGCCTCAAGGTTTGCGACTTGTCTATCTGCCCCGACAATGTGGGCTGCAACACTTTCAGCGTG AGTGTTATGTTTGTTGGTTACTCTGGGTTTGGCCAAATACTGACTATTATATCCGATAGACCGCTCTCCTTATCG GTGAAAAGTGCGCAGTCTTGGTTGCGGAGGACCTTGGCTATTCTGGGGCCGATCTGGATATGAAGATCCCTACTT ACCATGCTCCAGCAGAATTCTCCAATCTTTCTCGCCTTTGA |