© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6752.t1 |
| Gene name | |
| Location | scaffold_18:408879..410673 |
| Strand | + |
| Gene length (bp) | 1794 |
| Transcript length (bp) | 1488 |
| Coding sequence length (bp) | 1488 |
| Protein length (aa) | 496 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00083 | Sugar_tr | Sugar (and other) transporter | 1.9E-19 | 44 | 239 |
| PF00083 | Sugar_tr | Sugar (and other) transporter | 2.1E-09 | 269 | 460 |
| PF07690 | MFS_1 | Major Facilitator Superfamily | 1.9E-14 | 55 | 413 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 57 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 84 | 101 | 17 |
| 2 | 116 | 138 | 22 |
| 3 | 186 | 208 | 22 |
| 4 | 213 | 235 | 22 |
| 5 | 270 | 292 | 22 |
| 6 | 302 | 324 | 22 |
| 7 | 331 | 348 | 17 |
| 8 | 363 | 385 | 22 |
| 9 | 398 | 420 | 22 |
| 10 | 435 | 452 | 17 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 12.93 | 5.85 | 20.02 |
| 5d_25C | Five days - 25 degrees Celsius | 10.99 | 4.76 | 17.22 |
| 7d_25C | Seven days - 25 degrees Celsius | 9.35 | 3.68 | 15.02 |
| 10d_25C | Ten days - 25 degrees Celsius | 10.74 | 4.64 | 16.84 |
| 7d_15C | Seven days - 15 degrees Celsius | 11.30 | 4.21 | 18.38 |
| 7d_30C | Seven days - 30 degrees Celsius | 23.43 | 12.18 | 34.69 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.673740 | no |
| 3d_25C | 7d_25C | 0.359722 | no |
| 3d_25C | 7d_15C | 0.753553 | no |
| 3d_25C | 7d_30C | 0.031528 | yes |
| 3d_25C | 10d_25C | 0.635619 | no |
| 5d_25C | 7d_25C | 0.703748 | no |
| 5d_25C | 7d_15C | 0.959309 | no |
| 5d_25C | 7d_30C | 0.005626 | yes |
| 5d_25C | 10d_25C | 0.965244 | no |
| 7d_25C | 7d_15C | 0.667921 | no |
| 7d_25C | 7d_30C | 0.003197 | yes |
| 7d_25C | 10d_25C | 0.761176 | no |
| 7d_15C | 7d_30C | 0.013810 | yes |
| 7d_15C | 10d_25C | 0.921946 | no |
| 7d_30C | 10d_25C | 0.004840 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6752.t1 MAEDQSYSKEMPEKGSGPLEEQLVELPPLDETKKGRWERSWPTIACGAGLFSDGYLNQVIGPVGTMLQQIYGDEY TKSTAQQNVSSIVFAGTVVGMLIFGYTSDHWSRKWSLMISTIILFVFAALGAGSYGAGGSLGGMLAALTAYRFFL GIGIGGEYPAGSVGAAENTGELKSGHRNRWFIMFTNFQIDFGFVVAALVSMILVLIFTEKHLHACWRVALGLGVI PPLSLMYLRLKMNEPEEFNRERMHKFPTLLIIKFYWKRLAVVSIIWFLYDFSSYSFGIYSSAWLQIILGDKAPLW KSFGWTTVVNSFYIPGSALGAFVSDWIGPRYTLALGVGLQGIIGFIMAGCYKWLATPENVAAFVVVFGIFSALGE MGPGDNIGLCAAKTSATAIRGQYYSYAAAIGKVGAFVGTYVIPVIQKNAPNATRAGQDPFFVSSSLCILAAFMAL FMMPQINQDTITLEDARFRDYLEANGYDTTEMGNHNRQTDTREQQ* |
| Coding | >Pro_DTO377G3_2|g6752.t1 ATGGCCGAGGATCAGTCCTACTCCAAGGAGATGCCTGAGAAGGGCAGTGGTCCCCTCGAGGAGCAGCTTGTCGAG CTGCCGCCTCTTGACGAGACGAAGAAAGGGCGCTGGGAACGGAGTTGGCCCACTATTGCCTGTGGTGCTGGTCTC TTCTCTGACGGTTACTTGAACCAGGTCATTGGTCCCGTCGGTACTATGCTGCAACAGATTTACGGGGATGAATAC ACCAAATCGACGGCCCAACAGAATGTCTCTTCCATTGTTTTTGCCGGCACTGTGGTGGGTATGCTGATATTCGGA TACACTAGTGATCACTGGTCACGCAAGTGGTCTTTGATGATCTCCACCATTATCCTCTTTGTCTTTGCAGCTCTC GGTGCTGGCTCCTATGGAGCTGGCGGCAGCCTGGGTGGCATGCTTGCTGCTTTGACGGCCTACCGTTTCTTCCTG GGAATTGGCATTGGCGGAGAATACCCTGCTGGGTCAGTCGGCGCCGCAGAGAACACCGGAGAGCTCAAGAGCGGC CATCGCAATCGCTGGTTTATCATGTTCACCAACTTTCAGATTGATTTCGGTTTCGTGGTTGCTGCTTTGGTGTCT ATGATTCTCGTCCTGATCTTCACCGAGAAGCATCTGCATGCTTGCTGGCGTGTGGCACTGGGGCTGGGAGTAATC CCCCCTCTGAGTTTGATGTACCTTCGGCTGAAGATGAATGAGCCCGAGGAATTCAACCGGGAGCGCATGCACAAG TTTCCGACCTTGCTGATTATTAAATTCTATTGGAAGCGCTTGGCCGTTGTTTCTATTATCTGGTTCCTCTACGAC TTCTCTTCCTACAGCTTTGGTATCTATTCTTCAGCCTGGCTACAGATCATCTTAGGTGACAAGGCTCCCTTGTGG AAGAGCTTCGGTTGGACTACCGTGGTCAATTCTTTCTACATTCCAGGTTCCGCCCTTGGAGCCTTCGTGAGTGAC TGGATTGGTCCTCGCTACACCCTTGCCCTTGGGGTTGGGCTCCAGGGTATCATTGGGTTCATCATGGCCGGATGC TACAAGTGGCTTGCAACCCCAGAAAACGTGGCAGCCTTTGTTGTCGTATTCGGAATCTTCTCTGCTCTCGGTGAA ATGGGACCCGGGGACAACATCGGTCTCTGCGCCGCCAAGACCAGCGCGACTGCTATCCGTGGCCAGTACTATTCA TATGCTGCTGCTATCGGGAAGGTCGGGGCTTTTGTGGGCACCTACGTGATTCCAGTTATACAAAAGAACGCACCC AATGCGACCCGCGCAGGCCAGGACCCGTTCTTCGTTTCCAGCTCACTGTGTATCTTGGCCGCTTTTATGGCCCTT TTCATGATGCCGCAGATTAACCAGGACACCATTACTTTAGAGGATGCCAGGTTCCGCGACTATCTCGAGGCTAAT GGCTACGATACCACGGAAATGGGCAACCATAACCGCCAGACCGACACCCGCGAACAACAGTAA |
| Transcript | >Pro_DTO377G3_2|g6752.t1 ATGGCCGAGGATCAGTCCTACTCCAAGGAGATGCCTGAGAAGGGCAGTGGTCCCCTCGAGGAGCAGCTTGTCGAG CTGCCGCCTCTTGACGAGACGAAGAAAGGGCGCTGGGAACGGAGTTGGCCCACTATTGCCTGTGGTGCTGGTCTC TTCTCTGACGGTTACTTGAACCAGGTCATTGGTCCCGTCGGTACTATGCTGCAACAGATTTACGGGGATGAATAC ACCAAATCGACGGCCCAACAGAATGTCTCTTCCATTGTTTTTGCCGGCACTGTGGTGGGTATGCTGATATTCGGA TACACTAGTGATCACTGGTCACGCAAGTGGTCTTTGATGATCTCCACCATTATCCTCTTTGTCTTTGCAGCTCTC GGTGCTGGCTCCTATGGAGCTGGCGGCAGCCTGGGTGGCATGCTTGCTGCTTTGACGGCCTACCGTTTCTTCCTG GGAATTGGCATTGGCGGAGAATACCCTGCTGGGTCAGTCGGCGCCGCAGAGAACACCGGAGAGCTCAAGAGCGGC CATCGCAATCGCTGGTTTATCATGTTCACCAACTTTCAGATTGATTTCGGTTTCGTGGTTGCTGCTTTGGTGTCT ATGATTCTCGTCCTGATCTTCACCGAGAAGCATCTGCATGCTTGCTGGCGTGTGGCACTGGGGCTGGGAGTAATC CCCCCTCTGAGTTTGATGTACCTTCGGCTGAAGATGAATGAGCCCGAGGAATTCAACCGGGAGCGCATGCACAAG TTTCCGACCTTGCTGATTATTAAATTCTATTGGAAGCGCTTGGCCGTTGTTTCTATTATCTGGTTCCTCTACGAC TTCTCTTCCTACAGCTTTGGTATCTATTCTTCAGCCTGGCTACAGATCATCTTAGGTGACAAGGCTCCCTTGTGG AAGAGCTTCGGTTGGACTACCGTGGTCAATTCTTTCTACATTCCAGGTTCCGCCCTTGGAGCCTTCGTGAGTGAC TGGATTGGTCCTCGCTACACCCTTGCCCTTGGGGTTGGGCTCCAGGGTATCATTGGGTTCATCATGGCCGGATGC TACAAGTGGCTTGCAACCCCAGAAAACGTGGCAGCCTTTGTTGTCGTATTCGGAATCTTCTCTGCTCTCGGTGAA ATGGGACCCGGGGACAACATCGGTCTCTGCGCCGCCAAGACCAGCGCGACTGCTATCCGTGGCCAGTACTATTCA TATGCTGCTGCTATCGGGAAGGTCGGGGCTTTTGTGGGCACCTACGTGATTCCAGTTATACAAAAGAACGCACCC AATGCGACCCGCGCAGGCCAGGACCCGTTCTTCGTTTCCAGCTCACTGTGTATCTTGGCCGCTTTTATGGCCCTT TTCATGATGCCGCAGATTAACCAGGACACCATTACTTTAGAGGATGCCAGGTTCCGCGACTATCTCGAGGCTAAT GGCTACGATACCACGGAAATGGGCAACCATAACCGCCAGACCGACACCCGCGAACAACAGTAA |
| Gene | >Pro_DTO377G3_2|g6752.t1 ATGGCCGAGGATCAGTCCTACTCCAAGGAGATGCCTGAGAAGGGCAGTGGTCCCCTCGAGGAGCAGCTTGTCGAG CTGCCGCCTCTTGACGAGACGAAGAAAGGGCGCTGGGAACGGAGTTGGCCCACTATTGCCTGTGGTGCTGGTCTC TTCTCTGACGGTTACTTGAACCAGGTATGTTATGTTTCGTCCTCGTGGATGCAGCCCCACAGCTTCAATGCTACT CGCTCTTTACTGACACACTTGGATCTAGGTCATTGGTCCCGTCGGTACTATGCTGCAACAGATTTACGGGGATGA ATACACCAAATCGACGGCCCAACAGAATGTCTCTTCCATTGTTTTTGCCGGCACTGTGGTGGGTATGCTGATATT CGGATACACTAGTGATCACTGGTCACGCAAGTGGTCTTTGATGATCTCCACCATTATCCTCTTTGTCTTTGCAGC TCTCGGTGCTGGCTCCTATGGAGCTGGCGGCAGCCTGGGTGGCATGCTTGCTGCTTTGACGGCCTACCGTTTCTT CCTGGGAATTGGCATTGGCGGAGAATACCCTGCTGGGTCAGTCGGCGCCGCAGAGAACACCGGAGAGCTCAAGAG CGGCCATCGCAATCGCTGGTTTATCATGTTCACCAACTTTCAGATTGATTTCGGTTTCGTGGTTGCTGCTTTGGT GTCTATGATTCTCGTCCTGATCTTCACCGAGAAGCATCTGCATGCTTGCTGGCGTGTGGCACTGGGGCTGGGAGT AATCCCCCCTCTGAGTTTGATGTACCTTCGGCTGAAGATGAATGAGCCCGAGGAATTCAACCGGGAGCGCATGCA CAAGTTTCCGACCTTGCTGATTATTAAGTGAGTACAACATTTTCCACTGCTTGGACTCGTTGACTAACGGGTTTA GATTCTATTGGAAGCGCTTGGTAACAACCCCCACCGACGTGTTGCCTTTGCAGACTTCAACCAACTAACTGATTG GATGTATAGGCCGTTGTTTCTATTATCTGGTTCCTCTACGACTTCTCTTCCTACAGCTTTGGTATCTATTCTTCA GCCTGGCTACAGATCATCTTAGGTGACAAGGCTCCCTTGTGGAAGAGCTTCGGTTGGACTACCGTGGTCAATTCT TTCTACATTCCAGGTTCCGCCCTTGGAGCCTTCGTGAGTGACTGGATTGGTCCTCGCTACACCCTTGCCCTTGGG GTTGGGCTCCAGGGTATCATTGGGTTCATCATGGCCGGATGCTACAAGTGGCTTGCAACCCCAGAAAACGTGGCA GCCTTTGTTGTCGTATTCGGGTAAGTTTACTAACAGAGTTGTTAGACGTTAGCGATTGCCAATGCTAATACTTTG AAACCAGAATCTTCTCTGCTCTCGGTGAAATGGGACCCGGGGACAACATCGGTCTCTGCGCCGCCAAGACCAGCG CGACTGCTATCCGTGGCCAGTACTATTCATATGCTGCTGCTATCGGGAAGGTCGGGGCTTTTGTGGGCACCTACG TGATTCCAGTTATACAAAAGAACGCACCCAATGCGACCCGCGCAGGCCAGGACCCGTTCTTCGTTTCCAGCTCAC TGTGTATCTTGGCCGCTTTTATGGCCCTTTTCATGATGCCGCAGATTAACCAGGTATGAACTGTTGCAGATAGAG TACCTTGTTTATATGCTCACCTTTTCTCAGGACACCATTACTTTAGAGGATGCCAGGTTCCGCGACTATCTCGAG GCTAATGGCTACGATACCACGGAAATGGGCAACCATAACCGCCAGACCGACACCCGCGAACAACAGTAA |