© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6736.t1 |
| Gene name | |
| Location | scaffold_18:364459..365783 |
| Strand | - |
| Gene length (bp) | 1324 |
| Transcript length (bp) | 1134 |
| Coding sequence length (bp) | 1134 |
| Protein length (aa) | 378 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 29 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 10 | 32 | 22 |
| 2 | 45 | 67 | 22 |
| 3 | 87 | 109 | 22 |
| 4 | 122 | 144 | 22 |
| 5 | 167 | 189 | 22 |
| 6 | 201 | 219 | 18 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 0.11 | 0.0 | 0.33 |
| 5d_25C | Five days - 25 degrees Celsius | 0.02 | 0.0 | 0.16 |
| 7d_25C | Seven days - 25 degrees Celsius | 0.11 | 0.0 | 0.34 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.00 | 0.0 | 0.00 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.03 | 0.0 | 0.16 |
| 7d_30C | Seven days - 30 degrees Celsius | 0.46 | 0.0 | 1.06 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 1.0 | no |
| 3d_25C | 7d_25C | 1.0 | no |
| 3d_25C | 7d_15C | 1.0 | no |
| 3d_25C | 7d_30C | 1.0 | no |
| 3d_25C | 10d_25C | 1.0 | no |
| 5d_25C | 7d_25C | 1.0 | no |
| 5d_25C | 7d_15C | 1.0 | no |
| 5d_25C | 7d_30C | 1.0 | no |
| 5d_25C | 10d_25C | 1.0 | no |
| 7d_25C | 7d_15C | 1.0 | no |
| 7d_25C | 7d_30C | 1.0 | no |
| 7d_25C | 10d_25C | 1.0 | no |
| 7d_15C | 7d_30C | 1.0 | no |
| 7d_15C | 10d_25C | 1.0 | no |
| 7d_30C | 10d_25C | 1.0 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6736.t1 MTTLSTPRGHQALAISIVFTTIATLIAAVRILTRAFLVKQMGADDYVILVSLAFSWVFFGLMVGEVYHGMGEHYR DIPAATFKTQMLYFWASVPIYQTSLISTKMSILLQYKRVFSTPHMRRACWLLIGFLGFYGAWTIISAWANCVPLA KFWDPTVPGFCLDKKALWFSNSAIHILTDTLILIYPMPVLKSLQLPKKQKFALIAVFALGGFVLITSILRLKSLL VIANSSDPTYDNVGAATWSAVECNVAIICASLPGTRAFLSKLLPHIFSTRSNGYRSRTTRHTRNGNPLTANGNTQ VLASVVGGRGHSSDYDHDLEALSPSGSFNSYTKEPVKEVFAGIKVTTNVTQESTSHSKIVINDDMGSTKELVKKH SF* |
| Coding | >Pro_DTO377G3_2|g6736.t1 ATGACTACTCTATCGACACCCCGTGGTCACCAGGCCCTCGCCATCAGCATTGTGTTTACGACTATAGCGACATTA ATTGCTGCCGTGCGTATACTTACACGAGCATTTCTCGTAAAGCAGATGGGAGCGGACGACTATGTCATCCTAGTC TCTCTGGCCTTCTCGTGGGTTTTCTTCGGCCTGATGGTCGGCGAAGTCTACCACGGCATGGGTGAGCACTATAGG GATATCCCCGCTGCAACCTTCAAGACTCAGATGCTCTACTTCTGGGCTTCAGTTCCCATATATCAAACAAGCCTC ATCAGCACAAAGATGTCGATCCTTCTCCAATATAAACGAGTCTTCTCCACACCACACATGCGCCGAGCGTGTTGG CTCCTGATCGGCTTTCTAGGCTTCTACGGAGCCTGGACCATCATCAGCGCCTGGGCCAACTGTGTTCCTCTCGCG AAGTTCTGGGATCCAACTGTCCCAGGCTTCTGTTTGGATAAAAAAGCCTTGTGGTTCTCCAACTCGGCCATCCAC ATTCTTACCGATACTCTCATTCTCATATACCCAATGCCAGTCTTGAAATCGCTACAATTGCCCAAGAAGCAGAAG TTCGCTCTTATTGCTGTCTTCGCGCTAGGTGGATTCGTTTTGATCACAAGTATACTCCGCCTCAAATCTCTCCTC GTTATCGCCAACTCAAGCGATCCAACCTACGACAATGTCGGCGCAGCAACCTGGTCCGCGGTCGAGTGCAACGTC GCAATTATCTGCGCCTCTCTCCCGGGCACGCGCGCCTTCCTCTCCAAGCTCCTGCCTCACATCTTCTCCACCCGA AGCAACGGCTACCGCAGCAGGACCACGCGACATACGCGAAACGGAAACCCCCTCACAGCAAACGGCAACACGCAA GTCCTGGCCTCTGTCGTCGGTGGGCGTGGTCACAGCTCGGATTATGACCACGATCTGGAAGCTCTGTCGCCGTCT GGTTCCTTCAATAGCTACACCAAAGAGCCTGTGAAGGAGGTTTTTGCGGGAATCAAGGTCACGACTAATGTTACG CAGGAGAGTACCTCGCATTCGAAGATTGTTATTAATGATGATATGGGCAGTACGAAGGAATTGGTGAAGAAGCAT AGCTTTTGA |
| Transcript | >Pro_DTO377G3_2|g6736.t1 ATGACTACTCTATCGACACCCCGTGGTCACCAGGCCCTCGCCATCAGCATTGTGTTTACGACTATAGCGACATTA ATTGCTGCCGTGCGTATACTTACACGAGCATTTCTCGTAAAGCAGATGGGAGCGGACGACTATGTCATCCTAGTC TCTCTGGCCTTCTCGTGGGTTTTCTTCGGCCTGATGGTCGGCGAAGTCTACCACGGCATGGGTGAGCACTATAGG GATATCCCCGCTGCAACCTTCAAGACTCAGATGCTCTACTTCTGGGCTTCAGTTCCCATATATCAAACAAGCCTC ATCAGCACAAAGATGTCGATCCTTCTCCAATATAAACGAGTCTTCTCCACACCACACATGCGCCGAGCGTGTTGG CTCCTGATCGGCTTTCTAGGCTTCTACGGAGCCTGGACCATCATCAGCGCCTGGGCCAACTGTGTTCCTCTCGCG AAGTTCTGGGATCCAACTGTCCCAGGCTTCTGTTTGGATAAAAAAGCCTTGTGGTTCTCCAACTCGGCCATCCAC ATTCTTACCGATACTCTCATTCTCATATACCCAATGCCAGTCTTGAAATCGCTACAATTGCCCAAGAAGCAGAAG TTCGCTCTTATTGCTGTCTTCGCGCTAGGTGGATTCGTTTTGATCACAAGTATACTCCGCCTCAAATCTCTCCTC GTTATCGCCAACTCAAGCGATCCAACCTACGACAATGTCGGCGCAGCAACCTGGTCCGCGGTCGAGTGCAACGTC GCAATTATCTGCGCCTCTCTCCCGGGCACGCGCGCCTTCCTCTCCAAGCTCCTGCCTCACATCTTCTCCACCCGA AGCAACGGCTACCGCAGCAGGACCACGCGACATACGCGAAACGGAAACCCCCTCACAGCAAACGGCAACACGCAA GTCCTGGCCTCTGTCGTCGGTGGGCGTGGTCACAGCTCGGATTATGACCACGATCTGGAAGCTCTGTCGCCGTCT GGTTCCTTCAATAGCTACACCAAAGAGCCTGTGAAGGAGGTTTTTGCGGGAATCAAGGTCACGACTAATGTTACG CAGGAGAGTACCTCGCATTCGAAGATTGTTATTAATGATGATATGGGCAGTACGAAGGAATTGGTGAAGAAGCAT AGCTTTTGA |
| Gene | >Pro_DTO377G3_2|g6736.t1 ATGACTACTCTATCGACACCCCGTGGTCACCAGGCCCTCGCCATCAGCATTGTGTTTACGACTATAGCGACATTA ATTGCTGCCGTGCGTATACTTACACGAGCATTTCTCGTAAAGCAGATGGGAGCGGACGACTATGTCATCCTAGTC TCTCTGGCCTTCTCGTGGGTTTTCTTCGGCCTGATGGTCGGCGAAGTCTACCACGGCATGGGTGAGCACTATAGG GATATCCCCGCTGCAACCTTCAAGACTCAGATGCTCGTAAGTTCCGCAGCAGAACATCCCTCCAACAAAGTGCGG TTCCATTGACATGGCCCTCTTACAGTACTTCTGGGCTTCAGTTCCCATATATCAAACAAGCCTCATCAGCACAAA GATGTCGATCCTTCTCCAATATAAACGAGTCTTCTCCACACCACACATGCGCCGAGCGTGTTGGCTCCTGATCGG CTTTCTAGGCTTCTACGGAGCCTGGACCATCATCAGCGCCTGGGCCAACTGTGTTCCTCTCGCGAAGTTCTGGGA TCCAACTGTCCCAGGCTTCTGTTTGGATAAAAAAGCCTTGTGGTTCTCCAACTCGGCCATCCACATTCTTACCGA TACTCTCATTCTCATATACCCAATGCCAGTCTTGAAATCGCTACAATTGCCCAAGAAGCAGAAGTTCGCTCTTAT TGCTGTCTTCGCGCTAGGTGGATTGTAAGTCCGCCTCAATATGATGAGAATCATTTAACAATACTAACAATCATT CTTCCAGCGTTTTGATCACAAGTATACTCCGCCTCAAATCTCTCCTCGTTATCGCCAACTCAAGCGATCCAACCT GTAAGTACTAACAATCACCTGCAAAACCCTTCCCTTATCCACGAGCCAAATCTAACAATCTACCCCAGACGACAA TGTCGGCGCAGCAACCTGGTCCGCGGTCGAGTGCAACGTCGCAATTATCTGCGCCTCTCTCCCGGGCACGCGCGC CTTCCTCTCCAAGCTCCTGCCTCACATCTTCTCCACCCGAAGCAACGGCTACCGCAGCAGGACCACGCGACATAC GCGAAACGGAAACCCCCTCACAGCAAACGGCAACACGCAAGTCCTGGCCTCTGTCGTCGGTGGGCGTGGTCACAG CTCGGATTATGACCACGATCTGGAAGCTCTGTCGCCGTCTGGTTCCTTCAATAGCTACACCAAAGAGCCTGTGAA GGAGGTTTTTGCGGGAATCAAGGTCACGACTAATGTTACGCAGGAGAGTACCTCGCATTCGAAGATTGTTATTAA TGATGATATGGGCAGTACGAAGGAATTGGTGAAGAAGCATAGCTTTTGA |