Fungal Genomics

at Utrecht University

General Properties

Protein ID	Pro_DTO377G3_2\|g6728.t1
Gene name
Location	scaffold_18:344086..345549
Strand	+
Gene length (bp)	1463
Transcript length (bp)	1200
Coding sequence length (bp)	1200
Protein length (aa)	400

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF10342	Kre9_KNH	Kre9/KNH-like N-terminal Ig-like domain	2.7E-18	22	112

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
Yes	1 - 18	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
3d_25C	Three days - 25 degrees Celsius	0.00	0.0	0.00
5d_25C	Five days - 25 degrees Celsius	0.00	0.0	0.00
7d_25C	Seven days - 25 degrees Celsius	0.05	0.0	0.18
10d_25C	Ten days - 25 degrees Celsius	0.13	0.0	0.40
7d_15C	Seven days - 15 degrees Celsius	0.00	0.0	0.00
7d_30C	Seven days - 30 degrees Celsius	0.06	0.0	0.23

Differential expression

Label1	Label2	Q-value	Significant difference
3d_25C	5d_25C	1.0	no
3d_25C	7d_25C	1.0	no
3d_25C	7d_15C	1.0	no
3d_25C	7d_30C	1.0	no
3d_25C	10d_25C	1.0	no
5d_25C	7d_25C	1.0	no
5d_25C	7d_15C	1.0	no
5d_25C	7d_30C	1.0	no
5d_25C	10d_25C	1.0	no
7d_25C	7d_15C	1.0	no
7d_25C	7d_30C	1.0	no
7d_25C	10d_25C	1.0	no
7d_15C	7d_30C	1.0	no
7d_15C	10d_25C	1.0	no
7d_30C	10d_25C	1.0	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Pro_DTO377G3_2\|g6728.t1 MRMNIICLAVLAATAAGLTVTSPRIGEKIDPDLPLTIKWQSVSTDPQTFTIELVNQNVYPPTTTIVADDVDSSKG SYTVKAKTFADVDDGKGYQINFLSPTSGILAQSQQFLVTEPGEIASSASSSGKETSTALETSSASSLISSTAWTS DLTSSTPSSSTTSSYLSSTATHTSISASSPTSSYYSTASSSISTPTTSSFITSSSASASTSSVYSSITSTYTSTP EGPSYFPSTPSTLTVTTSYTETLTTTLMLTTLTSSSVTSISTIATSSSITPTPSSIISTFTTPTTSISITTSSIP PTTSTHLPTSTFITSSTISSTTYLSTHTSTTPEWTSSSTITSSSLSTATHSSTTSTTTHKTTSTTTSTATESAST TSNAAAVLMPPSGSLLLGLFALVL*
Coding	>Pro_DTO377G3_2\|g6728.t1 ATGCGGATGAATATTATCTGCCTGGCGGTTCTGGCTGCTACAGCTGCAGGTCTCACTGTCACTTCCCCCCGGATT GGTGAGAAGATTGACCCCGACCTGCCTCTTACTATCAAGTGGCAGTCCGTCTCAACGGATCCGCAAACCTTTACC ATCGAACTGGTCAATCAGAATGTCTACCCTCCGACAACGACAATTGTGGCAGATGATGTAGACTCTTCCAAGGGC TCCTACACTGTCAAAGCAAAAACGTTCGCGGATGTAGATGATGGGAAGGGATATCAGATCAACTTCCTCTCTCCG ACTAGCGGCATTCTGGCTCAGTCTCAGCAATTCCTAGTCACTGAGCCTGGTGAAATCGCTAGTAGTGCTAGTAGC TCTGGTAAGGAAACCAGTACTGCGCTTGAAACTTCGTCTGCCTCGTCCTTGATTTCTTCCACCGCGTGGACCAGT GATCTTACTTCTTCGACTCCTTCTTCCTCGACTACTTCCTCTTACCTGTCTTCGACTGCTACTCACACCTCCATC AGTGCGTCTAGCCCTACCTCGTCCTATTACTCTACTGCTTCATCTTCTATTTCTACCCCTACAACATCTTCTTTT ATAACTAGCTCTTCTGCAAGTGCGTCTACCTCTTCCGTTTATTCTTCTATTACTTCAACCTATACTTCCACCCCT GAAGGACCATCTTATTTCCCCTCAACACCCTCTACTTTGACAGTTACAACTTCTTACACCGAGACCTTGACTACT ACCTTGATGCTTACCACCCTCACTTCTTCCTCAGTTACTTCTATTTCTACAATTGCAACTTCTTCTTCTATTACA CCAACTCCATCCTCCATTATATCTACCTTTACTACCCCGACTACTTCTATTTCCATTACCACGTCGTCTATCCCA CCTACTACATCCACACATCTTCCTACCTCGACTTTCATCACATCAAGCACTATCTCATCTACCACATATCTTTCT ACCCACACATCCACTACCCCTGAATGGACCTCATCTTCAACCATCACCTCGAGTAGTCTGTCCACCGCAACCCAT TCGAGCACTACTTCGACCACCACTCACAAGACTACTTCGACCACAACATCGACTGCTACGGAGTCGGCAAGTACC ACCTCGAACGCTGCTGCCGTCCTCATGCCCCCTTCTGGCAGTCTGCTTCTGGGTCTGTTTGCGCTGGTCCTTTAA
Transcript	>Pro_DTO377G3_2\|g6728.t1 ATGCGGATGAATATTATCTGCCTGGCGGTTCTGGCTGCTACAGCTGCAGGTCTCACTGTCACTTCCCCCCGGATT GGTGAGAAGATTGACCCCGACCTGCCTCTTACTATCAAGTGGCAGTCCGTCTCAACGGATCCGCAAACCTTTACC ATCGAACTGGTCAATCAGAATGTCTACCCTCCGACAACGACAATTGTGGCAGATGATGTAGACTCTTCCAAGGGC TCCTACACTGTCAAAGCAAAAACGTTCGCGGATGTAGATGATGGGAAGGGATATCAGATCAACTTCCTCTCTCCG ACTAGCGGCATTCTGGCTCAGTCTCAGCAATTCCTAGTCACTGAGCCTGGTGAAATCGCTAGTAGTGCTAGTAGC TCTGGTAAGGAAACCAGTACTGCGCTTGAAACTTCGTCTGCCTCGTCCTTGATTTCTTCCACCGCGTGGACCAGT GATCTTACTTCTTCGACTCCTTCTTCCTCGACTACTTCCTCTTACCTGTCTTCGACTGCTACTCACACCTCCATC AGTGCGTCTAGCCCTACCTCGTCCTATTACTCTACTGCTTCATCTTCTATTTCTACCCCTACAACATCTTCTTTT ATAACTAGCTCTTCTGCAAGTGCGTCTACCTCTTCCGTTTATTCTTCTATTACTTCAACCTATACTTCCACCCCT GAAGGACCATCTTATTTCCCCTCAACACCCTCTACTTTGACAGTTACAACTTCTTACACCGAGACCTTGACTACT ACCTTGATGCTTACCACCCTCACTTCTTCCTCAGTTACTTCTATTTCTACAATTGCAACTTCTTCTTCTATTACA CCAACTCCATCCTCCATTATATCTACCTTTACTACCCCGACTACTTCTATTTCCATTACCACGTCGTCTATCCCA CCTACTACATCCACACATCTTCCTACCTCGACTTTCATCACATCAAGCACTATCTCATCTACCACATATCTTTCT ACCCACACATCCACTACCCCTGAATGGACCTCATCTTCAACCATCACCTCGAGTAGTCTGTCCACCGCAACCCAT TCGAGCACTACTTCGACCACCACTCACAAGACTACTTCGACCACAACATCGACTGCTACGGAGTCGGCAAGTACC ACCTCGAACGCTGCTGCCGTCCTCATGCCCCCTTCTGGCAGTCTGCTTCTGGGTCTGTTTGCGCTGGTCCTTTAA
Gene	>Pro_DTO377G3_2\|g6728.t1 ATGCGGATGAATATTATCTGCCTGGCGGTTCTGGCTGCTACAGCTGCAGGTATGAAATATCGTCCGCGGGAATAC AATCAATATAGTAACCGTTGAATCAGGTCTCACTGTCACTTCCCCCCGGATTGGTGAGAAGATTGACCCCGACCT GCCTCTTACTATCAAGTGGCAGTCCGTCTCGTAAGCTGCTAGTTATCCCAGTGCTTTATGAACACTGGCAATTTG CTAACCAGAAATACAATATTAATAGAACGGATCCGCAAACCTTTACCATCGAACTGGTCAATCAGAATGTCTACC CTCCGACAACGACAATTGTGGCAGATGATGTAGACTCTTCCAAGGGCTCCTACACTGTCAAAGCAAAAACGTTCG CGGATGTAGATGATGGGTAAGTTCAATTTCATTGCATTCTATTTGAATTACTGACTGATGAGCAATTTAGGAAGG GATATCAGATCAACTTCCTCTCTCCGACTAGCGGCATTCTGGCTCAGTCTCAGCAATTCCTAGTCACTGAGCCTG GTGAAATCGCTAGTAGTGCTAGTAGCTCTGGTAAGGAAACCAGTACTGCGCTTGAAACTTCGTCTGCCTCGTCCT TGATTTCTTCCACCGCGTGGACCAGTGATCTTACTTCTTCGACTCCTTCTTCCTCGACTACTTCCTCTTACCTGT CTTCGACTGCTACTCACACCTCCATCAGTGCGTCTAGCCCTACCTCGTCCTATTACTCTACTGCTTCATCTTCTA TTTCTACCCCTACAACATCTTCTTTTATAACTAGCTCTTCTGCAAGTGCGTCTACCTCTTCCGTTTATTCTTCTA TTACTTCAACCTATACTTCCACCCCTGAAGGACCATCTTATTTCCCCTCAACACCCTCTACTTTGACAGTTACAA CTTCTTACACCGAGACCTTGACTACTACCTTGATGCTTACCACCCTCACTTCTTCCTCAGTTACTTCTATTTCTA CAATTGCAACTTCTTCTTCTATTACACCAACTCCATCCTCCATTATATCTACCTTTACTACCCCGACTACTTCTA TTTCCATTACCACGTCGTCTATCCCACCTACTACATCCACACATCTTCCTACCTCGACTTTCATCACATCAAGCA CTATCTCATCTACCACATATCTTTCTACCCACACATCCACTACCCCTGGTTAGTAAAGGCGGAAAGCGTAGCTTC CGAGACAGCATTTTGTTTTTACCCACTTCATGAAAGAAACAGGGACTGACTTATCCATAGAATGGACCTCATCTT CAACCATCACCTCGAGTAGTCTGTCCACCGCAACCCATTCGAGCACTACTTCGACCACCACTCACAAGACTACTT CGACCACAACATCGACTGCTACGGAGTCGGCAAGTACCACCTCGAACGCTGCTGCCGTCCTCATGCCCCCTTCTG GCAGTCTGCTTCTGGGTCTGTTTGCGCTGGTCCTTTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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