Penicillium roqueforti LCP96 04111

General Properties

Protein ID	Pro_DTO377G3_2\|g6696.t1
Gene name
Location	scaffold_18:260853..262906
Strand	+
Gene length (bp)	2053
Transcript length (bp)	1818
Coding sequence length (bp)	1818
Protein length (aa)	606

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00152	tRNA-synt_2	tRNA synthetases class II (D, K and N)	7.7E-77	228	576
PF01336	tRNA_anti-codon	OB-fold nucleic acid binding domain	1.8E-12	127	210

GO

GO Term	Description	Terminal node
GO:0005524	ATP binding	Yes
GO:0004812	aminoacyl-tRNA ligase activity	Yes
GO:0000166	nucleotide binding	Yes
GO:0006418	tRNA aminoacylation for protein translation	Yes
GO:0003676	nucleic acid binding	Yes
GO:0043039	tRNA aminoacylation	No
GO:0005488	binding	No
GO:0016875	ligase activity, forming carbon-oxygen bonds	No
GO:0006520	cellular amino acid metabolic process	No
GO:0008152	metabolic process	No
GO:0006399	tRNA metabolic process	No
GO:0043170	macromolecule metabolic process	No
GO:0030554	adenyl nucleotide binding	No
GO:0006082	organic acid metabolic process	No
GO:0071704	organic substance metabolic process	No
GO:0036094	small molecule binding	No
GO:1901360	organic cyclic compound metabolic process	No
GO:0097367	carbohydrate derivative binding	No
GO:0017076	purine nucleotide binding	No
GO:0008150	biological_process	No
GO:0006725	cellular aromatic compound metabolic process	No
GO:0043167	ion binding	No
GO:0019752	carboxylic acid metabolic process	No
GO:0016070	RNA metabolic process	No
GO:0032559	adenyl ribonucleotide binding	No
GO:0035639	purine ribonucleoside triphosphate binding	No
GO:0003824	catalytic activity	No
GO:0043038	amino acid activation	No
GO:0140640	catalytic activity, acting on a nucleic acid	No
GO:0044238	primary metabolic process	No
GO:0034660	ncRNA metabolic process	No
GO:0009987	cellular process	No
GO:1901564	organonitrogen compound metabolic process	No
GO:0044237	cellular metabolic process	No
GO:0090304	nucleic acid metabolic process	No
GO:0043168	anion binding	No
GO:1901363	heterocyclic compound binding	No
GO:0140101	catalytic activity, acting on a tRNA	No
GO:0043436	oxoacid metabolic process	No
GO:0034641	cellular nitrogen compound metabolic process	No
GO:0140098	catalytic activity, acting on RNA	No
GO:0032555	purine ribonucleotide binding	No
GO:0032553	ribonucleotide binding	No
GO:0097159	organic cyclic compound binding	No
GO:0006139	nucleobase-containing compound metabolic process	No
GO:0016874	ligase activity	No
GO:0006807	nitrogen compound metabolic process	No
GO:0044281	small molecule metabolic process	No
GO:0003674	molecular_function	No
GO:0046483	heterocycle metabolic process	No
GO:1901265	nucleoside phosphate binding	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 25	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
3d_25C	Three days - 25 degrees Celsius	134.95	81.99	187.91
5d_25C	Five days - 25 degrees Celsius	114.10	69.72	158.47
7d_25C	Seven days - 25 degrees Celsius	108.54	66.37	150.71
10d_25C	Ten days - 25 degrees Celsius	93.83	57.62	130.05
7d_15C	Seven days - 15 degrees Celsius	152.22	92.01	212.43
7d_30C	Seven days - 30 degrees Celsius	97.36	59.70	135.03

Differential expression

Label1	Label2	Q-value	Significant difference
3d_25C	5d_25C	0.511237	no
3d_25C	7d_25C	0.369021	no
3d_25C	7d_15C	0.667290	no
3d_25C	7d_30C	0.134199	no
3d_25C	10d_25C	0.089882	no
5d_25C	7d_25C	0.876469	no
5d_25C	7d_15C	0.211194	no
5d_25C	7d_30C	0.535114	no
5d_25C	10d_25C	0.424958	no
7d_25C	7d_15C	0.125039	no
7d_25C	7d_30C	0.698271	no
7d_25C	10d_25C	0.584180	no
7d_15C	7d_30C	0.031095	yes
7d_15C	10d_25C	0.018560	yes
7d_30C	10d_25C	0.912723	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Pro_DTO377G3_2\|g6696.t1 MADSNPVQEATASIANLLLDDVTGEKVSKTELKRRQKQREKDAKKKEKEAAAPPKPKAEKKSSAEDDEANLTPNQ YFEIRSKRINKLRETKQPDPYPHKFHVDTDLRKFVKDYEGLQKGEQKPDVTVRVAGRIYTKRTSGNKLNFYDIRS EGVKIQVMCQAQFSTGKPFEEQHELLRRGDIVGIVGFPGRTNPKNRDDGELSIFATEVILLAPCLHAIPSEHYGF QDKEQRFRQRYLDLIMNDRSRDILRKRSKIVSYIRQYFENLDFIEVETPMMNAIAGGATAKPFVTHHNDLDMDLF MRVAPELYLKMLVVGGLERVFELSRVFRNEGIDLTHNPEFTTCEFYQAYADVYDLMDLTEDLVSNLVKHVTGGYE TVFHTQSGETYNVNWKAPWRRVEMMPALEEACGEKFPPSDQLHTQETNEFLKRVLKKMNVDCSAPQTNARMLDKL VGEFIENTCINPTFITGHPQMMSPLAKKHRQMAGLCERFEAFVCTKEIINAYTELNDPFDQRMRFEEQANQKDQG DDEAQMIDETFCQSLEYGLPPTAGWGLGIDRIVMFLTDNYSIKEVLTFPMMKDDKTAADPKTAAEVVGIEPSPEE GIPHK*
Coding	>Pro_DTO377G3_2\|g6696.t1 ATGGCGGATTCCAATCCTGTTCAAGAGGCCACTGCCTCCATTGCCAACCTTCTTCTCGATGATGTCACCGGCGAG AAAGTCTCCAAAACTGAATTGAAGAGACGCCAGAAGCAGCGTGAGAAGGACGCCAAGAAGAAGGAGAAGGAGGCA GCTGCTCCCCCTAAGCCCAAGGCCGAGAAGAAATCGTCTGCCGAGGATGACGAGGCCAACTTGACTCCTAACCAA TACTTCGAGATTCGTAGCAAGAGGATCAACAAGCTGCGCGAAACTAAGCAGCCGGATCCCTACCCACACAAATTC CACGTCGATACCGATCTCCGCAAATTCGTTAAGGATTATGAGGGTCTCCAGAAGGGCGAACAGAAGCCCGATGTT ACCGTCCGCGTTGCTGGCCGTATCTATACCAAGCGTACCTCCGGCAACAAGCTGAACTTTTATGACATCCGCTCA GAGGGTGTTAAGATCCAGGTAATGTGCCAGGCACAATTCTCGACCGGAAAGCCCTTCGAAGAGCAGCACGAGCTA CTTCGCAGAGGTGATATTGTGGGCATTGTGGGTTTCCCTGGTCGGACCAACCCCAAGAACCGTGACGATGGTGAA CTTTCTATCTTCGCCACTGAGGTTATTCTTCTGGCCCCTTGCTTGCATGCGATTCCTTCGGAGCACTACGGCTTC CAGGATAAAGAGCAGCGTTTCCGCCAGCGCTACCTAGATCTCATCATGAACGACCGGTCACGTGATATCCTTCGT AAACGATCTAAGATTGTTTCCTACATCCGCCAGTACTTTGAAAACCTTGATTTCATTGAGGTTGAGACTCCTATG ATGAATGCCATTGCTGGTGGTGCTACAGCCAAGCCCTTCGTTACCCACCATAATGACCTCGACATGGACCTCTTC ATGCGTGTCGCCCCCGAGCTCTACCTCAAGATGCTGGTTGTTGGAGGGCTCGAGCGTGTGTTCGAATTGTCCCGC GTGTTCCGAAATGAGGGAATTGACCTGACTCACAACCCCGAGTTCACAACCTGCGAATTCTACCAAGCTTACGCG GATGTGTACGACCTGATGGACTTGACTGAGGATCTCGTCTCGAATCTGGTTAAGCACGTTACTGGTGGTTACGAG ACCGTATTCCACACTCAGTCTGGCGAAACTTACAATGTGAACTGGAAGGCTCCCTGGAGGCGGGTGGAGATGATG CCTGCTCTCGAGGAGGCTTGCGGCGAGAAGTTCCCCCCTAGTGACCAGCTTCACACTCAGGAGACCAACGAATTC CTTAAGCGCGTCCTCAAGAAGATGAACGTGGATTGCTCGGCTCCTCAGACCAATGCCCGCATGCTCGACAAGCTA GTTGGCGAGTTCATCGAGAACACTTGCATTAACCCCACTTTTATCACCGGTCACCCCCAGATGATGTCGCCACTA GCTAAGAAGCACCGTCAAATGGCCGGTCTTTGCGAGCGTTTCGAGGCCTTCGTTTGCACCAAGGAAATCATCAAC GCTTACACGGAGTTGAACGATCCCTTCGACCAGCGTATGCGCTTCGAGGAGCAGGCCAATCAGAAGGATCAAGGT GACGACGAAGCTCAGATGATTGATGAGACTTTCTGCCAATCCCTCGAGTACGGTCTGCCCCCGACTGCTGGTTGG GGTCTGGGTATTGACCGCATCGTCATGTTCCTTACCGACAACTACAGCATCAAGGAAGTGTTGACCTTCCCCATG ATGAAAGACGATAAGACTGCTGCCGACCCCAAGACTGCTGCCGAAGTCGTCGGTATCGAGCCTAGCCCCGAAGAA GGAATCCCCCACAAATGA
Transcript	>Pro_DTO377G3_2\|g6696.t1 ATGGCGGATTCCAATCCTGTTCAAGAGGCCACTGCCTCCATTGCCAACCTTCTTCTCGATGATGTCACCGGCGAG AAAGTCTCCAAAACTGAATTGAAGAGACGCCAGAAGCAGCGTGAGAAGGACGCCAAGAAGAAGGAGAAGGAGGCA GCTGCTCCCCCTAAGCCCAAGGCCGAGAAGAAATCGTCTGCCGAGGATGACGAGGCCAACTTGACTCCTAACCAA TACTTCGAGATTCGTAGCAAGAGGATCAACAAGCTGCGCGAAACTAAGCAGCCGGATCCCTACCCACACAAATTC CACGTCGATACCGATCTCCGCAAATTCGTTAAGGATTATGAGGGTCTCCAGAAGGGCGAACAGAAGCCCGATGTT ACCGTCCGCGTTGCTGGCCGTATCTATACCAAGCGTACCTCCGGCAACAAGCTGAACTTTTATGACATCCGCTCA GAGGGTGTTAAGATCCAGGTAATGTGCCAGGCACAATTCTCGACCGGAAAGCCCTTCGAAGAGCAGCACGAGCTA CTTCGCAGAGGTGATATTGTGGGCATTGTGGGTTTCCCTGGTCGGACCAACCCCAAGAACCGTGACGATGGTGAA CTTTCTATCTTCGCCACTGAGGTTATTCTTCTGGCCCCTTGCTTGCATGCGATTCCTTCGGAGCACTACGGCTTC CAGGATAAAGAGCAGCGTTTCCGCCAGCGCTACCTAGATCTCATCATGAACGACCGGTCACGTGATATCCTTCGT AAACGATCTAAGATTGTTTCCTACATCCGCCAGTACTTTGAAAACCTTGATTTCATTGAGGTTGAGACTCCTATG ATGAATGCCATTGCTGGTGGTGCTACAGCCAAGCCCTTCGTTACCCACCATAATGACCTCGACATGGACCTCTTC ATGCGTGTCGCCCCCGAGCTCTACCTCAAGATGCTGGTTGTTGGAGGGCTCGAGCGTGTGTTCGAATTGTCCCGC GTGTTCCGAAATGAGGGAATTGACCTGACTCACAACCCCGAGTTCACAACCTGCGAATTCTACCAAGCTTACGCG GATGTGTACGACCTGATGGACTTGACTGAGGATCTCGTCTCGAATCTGGTTAAGCACGTTACTGGTGGTTACGAG ACCGTATTCCACACTCAGTCTGGCGAAACTTACAATGTGAACTGGAAGGCTCCCTGGAGGCGGGTGGAGATGATG CCTGCTCTCGAGGAGGCTTGCGGCGAGAAGTTCCCCCCTAGTGACCAGCTTCACACTCAGGAGACCAACGAATTC CTTAAGCGCGTCCTCAAGAAGATGAACGTGGATTGCTCGGCTCCTCAGACCAATGCCCGCATGCTCGACAAGCTA GTTGGCGAGTTCATCGAGAACACTTGCATTAACCCCACTTTTATCACCGGTCACCCCCAGATGATGTCGCCACTA GCTAAGAAGCACCGTCAAATGGCCGGTCTTTGCGAGCGTTTCGAGGCCTTCGTTTGCACCAAGGAAATCATCAAC GCTTACACGGAGTTGAACGATCCCTTCGACCAGCGTATGCGCTTCGAGGAGCAGGCCAATCAGAAGGATCAAGGT GACGACGAAGCTCAGATGATTGATGAGACTTTCTGCCAATCCCTCGAGTACGGTCTGCCCCCGACTGCTGGTTGG GGTCTGGGTATTGACCGCATCGTCATGTTCCTTACCGACAACTACAGCATCAAGGAAGTGTTGACCTTCCCCATG ATGAAAGACGATAAGACTGCTGCCGACCCCAAGACTGCTGCCGAAGTCGTCGGTATCGAGCCTAGCCCCGAAGAA GGAATCCCCCACAAATGA
Gene	>Pro_DTO377G3_2\|g6696.t1 ATGGCGGATTCCAATCCTGTTCAAGAGGCCACTGCCTCCATTGCCAACCTTCTTCTCGATGATGTCACCGGCGAG AAAGTCTCCAAAACTGAATTGAAGAGACGCCAGAAGCAGCGTGAGAAGGACGCCAAGAAGAAGGAGAAGGAGGCA GCTGCTCCCCCTAAGCCCAAGGCCGAGAAGAAATCGTCTGCCGAGGATGACGAGGCCAACTTGACTCCTAACGTT AGTGATCTTACTCCTGGGTCGATTCCTAGGTCCTGCGACGCTAATTAATGTGTCGTTCTAGCAATACTTCGAGAT TCGTAGCAAGAGGATCAACAAGCTGCGCGAAACTAAGCAGCCGGATCCCTACCCACACAAATTCCACGTCGATAC CGATCTCCGCAAATTCGTTAAGGATTATGAGGGTCTCCAGAAGGGCGAACAGAAGCCCGATGTTACCGTCCGCGT TGCTGGCCGTATCTATACCAAGCGTACCTCCGGCAACAAGCTGAACTTTTATGACATCCGCTCAGAGGGTGTTAA GATCCAGGTAATGTGCCAGGCACAATTCTCGACCGGAAAGCCCTTCGAAGAGCAGCACGAGCTACTTCGCAGAGG TGATATTGTGGGCATTGTGGGTTTCCCTGGTCGGACCAACCCCAAGAACCGTGACGATGGTGAACTTTCTATCTT CGCCACTGAGGTTATTCTTCTGGCCCCTTGCTTGCATGCGATTCCTTCGGAGCACTACGGCTTCCAGGATAAAGA GCAGCGTTTCCGCCAGCGCTACCTAGATCTCATCATGAACGACCGGTCACGTGATATCCTTCGTAAACGATCTAA GATTGTTTCCTACATCCGCCAGTACTTTGAAAACCTTGATTTCATTGAGGTTGAGACTCCTATGATGAATGCCAT TGCTGGTGGTGCTACAGCCAAGCCCTTCGTTACCCACCATAATGACCTCGACATGGACCTCTTCATGCGTGTCGC CCCCGAGCTCTACCTCAAGATGCTGGTTGTTGGAGGGCTCGAGCGTGTGTTCGAATTGTCCCGCGTGTTCCGAAA TGAGGGAATTGACCTGACTCACAACCCCGAGTTCACAACCTGCGAATTCTACCAAGCTTACGCGGATGTGTACGA CCTGATGGACTTGACTGAGGATCTCGTCTCGAATCTGGTTAAGCACGTTACTGGTGGTTACGAGACCGTATTCCA CACTCAGTCTGGCGAAACTTACAATGTGAACTGGAAGGCTCCCTGGAGGCGGGTGGAGATGATGCCTGCTCTCGA GGAGGCTTGCGGCGAGAAGTTCCCCCCTAGTGACCAGCTTCACACTCAGGAGACCAACGAATTCCTTAAGCGCGT CCTCAAGAAGATGAACGTGGATTGCTCGGCTCCTCAGACCAATGCCCGCATGCTCGACAAGCTAGTTGGCGAGTT CATCGAGAACACTTGCATTAACCCCACTTTTATCACCGGTCACCCCCAGATGATGTCGCCACTAGCTAAGAAGCA CCGTCAAATGGCCGGTCTTTGCGAGCGTTTCGAGGCCTTCGTTTGGTAAGTTCTCACCCAACTTCTAGTTGCTTG AAAACCCCCCGTTCTTTCCAAATTCGCTCTGCCTATAATTGGCCTATCAGTCTTCGCGGAATTTTAGCTAACCAA ATTACAGCACCAAGGAAATCATCAACGCTTACACGGAGTTGAACGATCCCTTCGACCAGCGTATGCGCTTCGAGG AGCAGGCCAATCAGAAGGATCAAGGTGACGACGAAGCTCAGATGATTGATGAGACTTTCTGCCAATCCCTCGAGT ACGGTCTGCCCCCGACTGCTGGTTGGGGTCTGGGTATTGACCGCATCGTCATGTTCCTTACCGACAACTACAGCA TCAAGGAAGTGTTGACCTTCCCCATGATGAAAGACGATAAGACTGCTGCCGACCCCAAGACTGCTGCCGAAGTCG TCGGTATCGAGCCTAGCCCCGAAGAAGGAATCCGTATGTTATTAATATCAGCAAATTTCCACGAGCCGATATCAC TGACGATGAATATACAGCCCACAAATGA

Fungal Genomics

General Properties

PFAM Domains

GO

SignalP

Transmembrane Domains

Transcription Factor Class

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Sequences