Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g6680.t1
Gene name
Locationscaffold_18:205916..206597
Strand+
Gene length (bp)681
Transcript length (bp)681
Coding sequence length (bp)681
Protein length (aa) 227

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF13417 GST_N_3 Glutathione S-transferase, N-terminal domain 2.6E-11 8 87
PF13409 GST_N_2 Glutathione S-transferase, N-terminal domain 6.3E-11 13 83
PF02798 GST_N Glutathione S-transferase, N-terminal domain 2.9E-09 4 82
PF00043 GST_C Glutathione S-transferase, C-terminal domain 2.8E-06 147 192
PF14497 GST_C_3 Glutathione S-transferase, C-terminal domain 2.8E-05 134 207

GO

GO Term Description Terminal node
GO:0005515 protein binding Yes
GO:0006749 glutathione metabolic process Yes
GO:0034641 cellular nitrogen compound metabolic process No
GO:0008150 biological_process No
GO:0005488 binding No
GO:0009987 cellular process No
GO:1901564 organonitrogen compound metabolic process No
GO:0044237 cellular metabolic process No
GO:0043603 cellular amide metabolic process No
GO:0006807 nitrogen compound metabolic process No
GO:0008152 metabolic process No
GO:0006518 peptide metabolic process No
GO:0006790 sulfur compound metabolic process No
GO:0003674 molecular_function No
GO:0006575 cellular modified amino acid metabolic process No
GO:0071704 organic substance metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 18 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 26.86 11.28 42.44
5d_25C Five days - 25 degrees Celsius 49.64 24.49 74.79
7d_25C Seven days - 25 degrees Celsius 61.23 31.39 91.06
10d_25C Ten days - 25 degrees Celsius 140.06 82.67 197.44
7d_15C Seven days - 15 degrees Celsius 8.34 1.88 14.80
7d_30C Seven days - 30 degrees Celsius 76.60 42.35 110.85

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.034125 yes
3d_25C 7d_25C 0.001278 yes
3d_25C 7d_15C 0.000700 yes
3d_25C 7d_30C 0.000700 yes
3d_25C 10d_25C 0.000700 yes
5d_25C 7d_25C 0.523722 no
5d_25C 7d_15C 0.000700 yes
5d_25C 7d_30C 0.099736 no
5d_25C 10d_25C 0.000700 yes
7d_25C 7d_15C 0.000700 yes
7d_25C 7d_30C 0.456499 no
7d_25C 10d_25C 0.000700 yes
7d_15C 7d_30C 0.000700 yes
7d_15C 10d_25C 0.000700 yes
7d_30C 10d_25C 0.005626 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g6680.t1
MTDTVTLHTYFRSSCSARLRIALYLKQVPFTPVYVNLLKGEQSSPAHLAINPSGTVPALVIQHDSKAPITITQSL
AALEYLEEAFPEQGPALLPPASDPETRAAVRTLADIISCDIQPVTNLRILKRVGQLGAERADWAKDLMEDGFRVY
EAVVKKSAGKFSVGDSITIADLCLIPAAWGAQRFGVDLGQFPVTNEIVKNLEMEEAVKKGHWRSQGDTPDEFRIK
E*
Coding >Pro_DTO377G3_2|g6680.t1
ATGACCGACACAGTCACTCTCCACACCTATTTCCGCTCCTCCTGCTCTGCCAGGCTCCGGATAGCCCTGTACTTG
AAGCAAGTTCCTTTCACGCCCGTCTACGTGAATCTCCTAAAGGGCGAGCAATCCTCCCCAGCCCATCTGGCCATC
AACCCCTCAGGAACAGTGCCAGCCCTAGTAATCCAGCACGACTCAAAAGCGCCAATTACAATCACGCAATCTCTG
GCTGCACTTGAGTACCTCGAGGAAGCCTTCCCAGAGCAAGGGCCCGCCTTGCTCCCCCCAGCCTCGGATCCAGAG
ACCCGCGCGGCAGTGCGCACGTTGGCGGACATTATCTCCTGCGATATACAACCTGTTACGAACTTGAGGATTCTC
AAGCGGGTTGGACAGCTGGGGGCTGAACGTGCTGATTGGGCAAAGGATTTGATGGAGGATGGCTTTAGGGTTTAC
GAAGCTGTTGTTAAGAAATCGGCGGGGAAGTTTAGCGTTGGAGATTCCATTACCATTGCGGATTTGTGCTTGATT
CCTGCTGCCTGGGGAGCTCAGCGGTTTGGTGTTGACCTGGGTCAATTCCCGGTTACGAATGAGATTGTGAAGAAC
TTGGAGATGGAAGAGGCGGTTAAGAAGGGGCATTGGAGATCACAGGGCGATACCCCCGATGAGTTTCGTATTAAG
GAATAG
Transcript >Pro_DTO377G3_2|g6680.t1
ATGACCGACACAGTCACTCTCCACACCTATTTCCGCTCCTCCTGCTCTGCCAGGCTCCGGATAGCCCTGTACTTG
AAGCAAGTTCCTTTCACGCCCGTCTACGTGAATCTCCTAAAGGGCGAGCAATCCTCCCCAGCCCATCTGGCCATC
AACCCCTCAGGAACAGTGCCAGCCCTAGTAATCCAGCACGACTCAAAAGCGCCAATTACAATCACGCAATCTCTG
GCTGCACTTGAGTACCTCGAGGAAGCCTTCCCAGAGCAAGGGCCCGCCTTGCTCCCCCCAGCCTCGGATCCAGAG
ACCCGCGCGGCAGTGCGCACGTTGGCGGACATTATCTCCTGCGATATACAACCTGTTACGAACTTGAGGATTCTC
AAGCGGGTTGGACAGCTGGGGGCTGAACGTGCTGATTGGGCAAAGGATTTGATGGAGGATGGCTTTAGGGTTTAC
GAAGCTGTTGTTAAGAAATCGGCGGGGAAGTTTAGCGTTGGAGATTCCATTACCATTGCGGATTTGTGCTTGATT
CCTGCTGCCTGGGGAGCTCAGCGGTTTGGTGTTGACCTGGGTCAATTCCCGGTTACGAATGAGATTGTGAAGAAC
TTGGAGATGGAAGAGGCGGTTAAGAAGGGGCATTGGAGATCACAGGGCGATACCCCCGATGAGTTTCGTATTAAG
GAATAG
Gene >Pro_DTO377G3_2|g6680.t1
ATGACCGACACAGTCACTCTCCACACCTATTTCCGCTCCTCCTGCTCTGCCAGGCTCCGGATAGCCCTGTACTTG
AAGCAAGTTCCTTTCACGCCCGTCTACGTGAATCTCCTAAAGGGCGAGCAATCCTCCCCAGCCCATCTGGCCATC
AACCCCTCAGGAACAGTGCCAGCCCTAGTAATCCAGCACGACTCAAAAGCGCCAATTACAATCACGCAATCTCTG
GCTGCACTTGAGTACCTCGAGGAAGCCTTCCCAGAGCAAGGGCCCGCCTTGCTCCCCCCAGCCTCGGATCCAGAG
ACCCGCGCGGCAGTGCGCACGTTGGCGGACATTATCTCCTGCGATATACAACCTGTTACGAACTTGAGGATTCTC
AAGCGGGTTGGACAGCTGGGGGCTGAACGTGCTGATTGGGCAAAGGATTTGATGGAGGATGGCTTTAGGGTTTAC
GAAGCTGTTGTTAAGAAATCGGCGGGGAAGTTTAGCGTTGGAGATTCCATTACCATTGCGGATTTGTGCTTGATT
CCTGCTGCCTGGGGAGCTCAGCGGTTTGGTGTTGACCTGGGTCAATTCCCGGTTACGAATGAGATTGTGAAGAAC
TTGGAGATGGAAGAGGCGGTTAAGAAGGGGCATTGGAGATCACAGGGCGATACCCCCGATGAGTTTCGTATTAAG
GAATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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