© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6665.t1 |
| Gene name | |
| Location | scaffold_18:172356..174203 |
| Strand | + |
| Gene length (bp) | 1847 |
| Transcript length (bp) | 1725 |
| Coding sequence length (bp) | 1725 |
| Protein length (aa) | 575 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00171 | Aldedh | Aldehyde dehydrogenase family | 1.5E-106 | 83 | 554 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 14 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 89.16 | 54.30 | 124.03 |
| 5d_25C | Five days - 25 degrees Celsius | 67.63 | 41.37 | 93.90 |
| 7d_25C | Seven days - 25 degrees Celsius | 42.84 | 25.57 | 60.11 |
| 10d_25C | Ten days - 25 degrees Celsius | 57.26 | 34.87 | 79.65 |
| 7d_15C | Seven days - 15 degrees Celsius | 48.32 | 28.89 | 67.74 |
| 7d_30C | Seven days - 30 degrees Celsius | 74.27 | 45.23 | 103.30 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.218334 | no |
| 3d_25C | 7d_25C | 0.000700 | yes |
| 3d_25C | 7d_15C | 0.002761 | yes |
| 3d_25C | 7d_30C | 0.482767 | no |
| 3d_25C | 10d_25C | 0.033253 | yes |
| 5d_25C | 7d_25C | 0.025858 | yes |
| 5d_25C | 7d_15C | 0.125400 | no |
| 5d_25C | 7d_30C | 0.750821 | no |
| 5d_25C | 10d_25C | 0.515288 | no |
| 7d_25C | 7d_15C | 0.674016 | no |
| 7d_25C | 7d_30C | 0.005235 | yes |
| 7d_25C | 10d_25C | 0.200667 | no |
| 7d_15C | 7d_30C | 0.042614 | yes |
| 7d_15C | 10d_25C | 0.520553 | no |
| 7d_30C | 10d_25C | 0.258334 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6665.t1 MSSILRTRAPISRLACRVPSSSTRSMGTYATFKVPQINNEPNKHYIPGTPDRKGLEEALANYKQKAPLNVPLVVA GKELKGYETFTQSNPATHAPVATYSNASKADVQSAIDSALAARKSWAETPFAERASIFLKAADLIATKYRYDIMA LTMHGQGKNAWQAEIDSAAELCDFFRFGVKYAEELYAQQPSHNSAGVWNRLEYRPLEGFVYAISPFNFTAIGGNL AGAPALMGNVVIWKPSPSAIASNWLVHQILLEAGLPKDVIQFVPGDAAEVTSTVLESRDFAALHFTGSTDVFRML YGKISQGVADGKYRSYPRIVGETGGKNFHLVHKSADVRNAAVQTVRGAFEFQGQKCSATSRVYIASSIAEDFAQQ VVAEVQKIHVGEPSEFTNFCGPVIHEASFNKLSGVIEEAKNDPELELLVGGTYDSSKGWYIQPTVYRTSNPDHPL LSRELFGPILVIHSYNDATEADFTKICDKIDSTSTYALTGSIFAQDRAAIQVADEALRNAAGNFYINCKSTGAVV GQQPFGGARASGTNDKAGSANLMSRFVSLRSIKEEYVPTYTVAYPSNAN* |
| Coding | >Pro_DTO377G3_2|g6665.t1 ATGTCCTCCATTTTGCGCACCCGCGCGCCCATTTCGCGCCTCGCATGCCGCGTTCCGAGCTCTAGCACACGCTCC ATGGGCACGTACGCCACTTTCAAGGTGCCCCAAATTAACAACGAACCTAATAAACACTATATTCCTGGTACTCCA GATCGCAAGGGTCTCGAGGAGGCTTTGGCAAACTATAAGCAGAAAGCCCCTTTGAACGTGCCTCTGGTAGTTGCG GGCAAGGAGCTCAAGGGATATGAAACCTTCACTCAGTCTAACCCCGCAACCCATGCTCCTGTGGCAACTTATTCC AACGCGTCGAAGGCCGATGTTCAGTCCGCCATTGATTCTGCTCTCGCCGCTCGCAAGTCCTGGGCTGAAACTCCT TTCGCCGAGCGAGCTAGCATTTTCCTCAAGGCCGCTGATCTTATTGCGACCAAGTACCGCTACGATATTATGGCC TTGACTATGCACGGACAGGGCAAGAATGCATGGCAAGCAGAGATTGATTCCGCCGCTGAGCTCTGCGACTTCTTC CGATTCGGTGTGAAGTATGCCGAAGAGCTTTACGCGCAACAGCCTAGTCACAACTCCGCTGGTGTGTGGAACCGT CTTGAGTACCGTCCTCTCGAGGGTTTCGTGTACGCGATCAGTCCCTTCAACTTCACAGCAATCGGCGGTAACTTG GCTGGTGCACCCGCTCTGATGGGTAACGTCGTGATCTGGAAGCCCTCGCCCTCCGCAATTGCCTCCAACTGGCTC GTACACCAGATTCTACTTGAGGCCGGTCTACCCAAGGACGTCATCCAGTTCGTTCCTGGTGATGCCGCAGAAGTG ACTAGCACTGTCCTTGAAAGCCGCGATTTCGCCGCTCTTCACTTTACCGGGAGCACTGATGTCTTCCGCATGCTG TACGGTAAGATCTCACAGGGCGTGGCGGATGGTAAATACCGCAGCTACCCTCGCATTGTGGGTGAGACCGGTGGT AAGAACTTCCACTTGGTACACAAGTCTGCAGATGTCCGCAACGCCGCGGTCCAGACTGTGCGCGGTGCTTTCGAG TTCCAGGGCCAGAAGTGCAGCGCCACATCCCGTGTCTACATCGCCTCGTCGATTGCTGAGGACTTTGCCCAGCAG GTTGTCGCTGAGGTGCAGAAGATTCACGTTGGCGAGCCATCTGAGTTCACCAACTTCTGCGGTCCCGTCATCCAT GAGGCCTCATTCAACAAGCTGTCCGGTGTTATTGAGGAGGCCAAGAATGACCCCGAACTTGAGCTGCTCGTTGGT GGAACCTACGACTCTTCCAAGGGATGGTACATCCAGCCTACAGTCTACCGCACCTCCAACCCAGACCACCCTCTG CTTTCGCGCGAGCTTTTCGGTCCCATCCTTGTCATTCACTCCTACAACGACGCCACCGAAGCCGACTTCACCAAG ATTTGTGACAAGATTGATAGTACTAGCACCTACGCTCTGACCGGCTCTATCTTTGCCCAGGATCGTGCGGCTATC CAGGTCGCCGATGAGGCTCTCCGCAACGCTGCTGGCAACTTCTATATCAACTGCAAGAGCACCGGTGCCGTTGTC GGCCAGCAGCCCTTCGGTGGTGCACGTGCTAGCGGTACCAATGATAAGGCCGGAAGTGCTAATCTAATGTCCCGT TTCGTCAGCTTGCGTTCCATTAAGGAGGAGTACGTTCCAACATATACCGTTGCGTACCCCAGCAATGCCAACTAA |
| Transcript | >Pro_DTO377G3_2|g6665.t1 ATGTCCTCCATTTTGCGCACCCGCGCGCCCATTTCGCGCCTCGCATGCCGCGTTCCGAGCTCTAGCACACGCTCC ATGGGCACGTACGCCACTTTCAAGGTGCCCCAAATTAACAACGAACCTAATAAACACTATATTCCTGGTACTCCA GATCGCAAGGGTCTCGAGGAGGCTTTGGCAAACTATAAGCAGAAAGCCCCTTTGAACGTGCCTCTGGTAGTTGCG GGCAAGGAGCTCAAGGGATATGAAACCTTCACTCAGTCTAACCCCGCAACCCATGCTCCTGTGGCAACTTATTCC AACGCGTCGAAGGCCGATGTTCAGTCCGCCATTGATTCTGCTCTCGCCGCTCGCAAGTCCTGGGCTGAAACTCCT TTCGCCGAGCGAGCTAGCATTTTCCTCAAGGCCGCTGATCTTATTGCGACCAAGTACCGCTACGATATTATGGCC TTGACTATGCACGGACAGGGCAAGAATGCATGGCAAGCAGAGATTGATTCCGCCGCTGAGCTCTGCGACTTCTTC CGATTCGGTGTGAAGTATGCCGAAGAGCTTTACGCGCAACAGCCTAGTCACAACTCCGCTGGTGTGTGGAACCGT CTTGAGTACCGTCCTCTCGAGGGTTTCGTGTACGCGATCAGTCCCTTCAACTTCACAGCAATCGGCGGTAACTTG GCTGGTGCACCCGCTCTGATGGGTAACGTCGTGATCTGGAAGCCCTCGCCCTCCGCAATTGCCTCCAACTGGCTC GTACACCAGATTCTACTTGAGGCCGGTCTACCCAAGGACGTCATCCAGTTCGTTCCTGGTGATGCCGCAGAAGTG ACTAGCACTGTCCTTGAAAGCCGCGATTTCGCCGCTCTTCACTTTACCGGGAGCACTGATGTCTTCCGCATGCTG TACGGTAAGATCTCACAGGGCGTGGCGGATGGTAAATACCGCAGCTACCCTCGCATTGTGGGTGAGACCGGTGGT AAGAACTTCCACTTGGTACACAAGTCTGCAGATGTCCGCAACGCCGCGGTCCAGACTGTGCGCGGTGCTTTCGAG TTCCAGGGCCAGAAGTGCAGCGCCACATCCCGTGTCTACATCGCCTCGTCGATTGCTGAGGACTTTGCCCAGCAG GTTGTCGCTGAGGTGCAGAAGATTCACGTTGGCGAGCCATCTGAGTTCACCAACTTCTGCGGTCCCGTCATCCAT GAGGCCTCATTCAACAAGCTGTCCGGTGTTATTGAGGAGGCCAAGAATGACCCCGAACTTGAGCTGCTCGTTGGT GGAACCTACGACTCTTCCAAGGGATGGTACATCCAGCCTACAGTCTACCGCACCTCCAACCCAGACCACCCTCTG CTTTCGCGCGAGCTTTTCGGTCCCATCCTTGTCATTCACTCCTACAACGACGCCACCGAAGCCGACTTCACCAAG ATTTGTGACAAGATTGATAGTACTAGCACCTACGCTCTGACCGGCTCTATCTTTGCCCAGGATCGTGCGGCTATC CAGGTCGCCGATGAGGCTCTCCGCAACGCTGCTGGCAACTTCTATATCAACTGCAAGAGCACCGGTGCCGTTGTC GGCCAGCAGCCCTTCGGTGGTGCACGTGCTAGCGGTACCAATGATAAGGCCGGAAGTGCTAATCTAATGTCCCGT TTCGTCAGCTTGCGTTCCATTAAGGAGGAGTACGTTCCAACATATACCGTTGCGTACCCCAGCAATGCCAACTAA |
| Gene | >Pro_DTO377G3_2|g6665.t1 ATGTCCTCCATTTTGCGCACCCGCGCGCCCATTTCGCGCCTCGCATGCCGCGTTCCGAGCTCTAGCACACGCTCC ATGGGCACGTACGCCACTTTCAAGGTGCCCCAAATTAACAACGAACCTAATGTGAGCTCGGAACTGGAATTGAGA TTGTTTGATCATTTGCGCTAATTCTGAACCTTAAGAAACACTATATTCCTGGTACTCCAGATCGCAAGGGTCTCG AGGAGGCTTTGGCAAACTATAAGCAGAAAGCCCCTTTGAACGTGCCTCTGGTAGTTGCGGGCAAGGAGGTAAGAA CTCGCAAGACATATTAAATCTACCGAACTATCGATCTCTAACATTCAATCACACAGCTCAAGGGATATGAAACCT TCACTCAGTCTAACCCCGCAACCCATGCTCCTGTGGCAACTTATTCCAACGCGTCGAAGGCCGATGTTCAGTCCG CCATTGATTCTGCTCTCGCCGCTCGCAAGTCCTGGGCTGAAACTCCTTTCGCCGAGCGAGCTAGCATTTTCCTCA AGGCCGCTGATCTTATTGCGACCAAGTACCGCTACGATATTATGGCCTTGACTATGCACGGACAGGGCAAGAATG CATGGCAAGCAGAGATTGATTCCGCCGCTGAGCTCTGCGACTTCTTCCGATTCGGTGTGAAGTATGCCGAAGAGC TTTACGCGCAACAGCCTAGTCACAACTCCGCTGGTGTGTGGAACCGTCTTGAGTACCGTCCTCTCGAGGGTTTCG TGTACGCGATCAGTCCCTTCAACTTCACAGCAATCGGCGGTAACTTGGCTGGTGCACCCGCTCTGATGGGTAACG TCGTGATCTGGAAGCCCTCGCCCTCCGCAATTGCCTCCAACTGGCTCGTACACCAGATTCTACTTGAGGCCGGTC TACCCAAGGACGTCATCCAGTTCGTTCCTGGTGATGCCGCAGAAGTGACTAGCACTGTCCTTGAAAGCCGCGATT TCGCCGCTCTTCACTTTACCGGGAGCACTGATGTCTTCCGCATGCTGTACGGTAAGATCTCACAGGGCGTGGCGG ATGGTAAATACCGCAGCTACCCTCGCATTGTGGGTGAGACCGGTGGTAAGAACTTCCACTTGGTACACAAGTCTG CAGATGTCCGCAACGCCGCGGTCCAGACTGTGCGCGGTGCTTTCGAGTTCCAGGGCCAGAAGTGCAGCGCCACAT CCCGTGTCTACATCGCCTCGTCGATTGCTGAGGACTTTGCCCAGCAGGTTGTCGCTGAGGTGCAGAAGATTCACG TTGGCGAGCCATCTGAGTTCACCAACTTCTGCGGTCCCGTCATCCATGAGGCCTCATTCAACAAGCTGTCCGGTG TTATTGAGGAGGCCAAGAATGACCCCGAACTTGAGCTGCTCGTTGGTGGAACCTACGACTCTTCCAAGGGATGGT ACATCCAGCCTACAGTCTACCGCACCTCCAACCCAGACCACCCTCTGCTTTCGCGCGAGCTTTTCGGTCCCATCC TTGTCATTCACTCCTACAACGACGCCACCGAAGCCGACTTCACCAAGATTTGTGACAAGATTGATAGTACTAGCA CCTACGCTCTGACCGGCTCTATCTTTGCCCAGGATCGTGCGGCTATCCAGGTCGCCGATGAGGCTCTCCGCAACG CTGCTGGCAACTTCTATATCAACTGCAAGAGCACCGGTGCCGTTGTCGGCCAGCAGCCCTTCGGTGGTGCACGTG CTAGCGGTACCAATGATAAGGCCGGAAGTGCTAATCTAATGTCCCGTTTCGTCAGCTTGCGTTCCATTAAGGAGG AGTACGTTCCAACATATACCGTTGCGTACCCCAGCAATGCCAACTAA |