© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g6664.t1 |
| Gene name | |
| Location | scaffold_18:169807..171744 |
| Strand | + |
| Gene length (bp) | 1937 |
| Transcript length (bp) | 1650 |
| Coding sequence length (bp) | 1650 |
| Protein length (aa) | 550 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00324 | AA_permease | Amino acid permease | 2.7E-127 | 42 | 508 |
| PF13520 | AA_permease_2 | Amino acid permease | 8.2E-28 | 45 | 493 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 67 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 45 | 67 | 22 |
| 2 | 77 | 99 | 22 |
| 3 | 120 | 142 | 22 |
| 4 | 152 | 174 | 22 |
| 5 | 181 | 203 | 22 |
| 6 | 235 | 257 | 22 |
| 7 | 277 | 299 | 22 |
| 8 | 319 | 341 | 22 |
| 9 | 379 | 396 | 17 |
| 10 | 406 | 428 | 22 |
| 11 | 453 | 475 | 22 |
| 12 | 479 | 501 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6664.t1 MKDSPKSLEAAVRPESPYDDPKDMQGEIIHNSDTKRGLSSRHIQFLALGGCIGTGLFVGSGSALATVGPAPLLMG YIVMSSIVYFIMNMLGEMTTYLPVQGVSVPYLITRFTEPSLGFAVGYNYWYSFSMLIASEVTASGMVIEYWQSPV SVGVWIAIILVVILLLNIVAVAWYGEAEFWFASLKIIAIVGLIILGIVLFFGGGPNHDRLGFRYWQRPGAFVEPY LVPNINTGRFLAFWTAMIKCGFSFIFSPELITTAAGEAASPRRNIPKAAKRFIYRLFAFYILGALVIGVIVAYND KNLLQGVASGSSGAGASPFVIGIQNAGITGLNHVINAVVLISAFSSGNSWVFAGSRTLYSLAGEGQAPKIFLRCN KNGVPYNAVIVTWMIGLLSFLNLSTSGSTVFYWFTNITTIGGFISWVIVAVAYLRWRSALDFHGLLPSRPFITPI QPYGAYYVIGFISLLAITNGYTVFFPGSFTASDFLVSYIVFAIFFVLYFGHKIYYKTPWMTKVSELDIFTGKDEI DRLEEEEVEPQPRNWLERVWWWIA* |
| Coding | >Pro_DTO377G3_2|g6664.t1 ATGAAAGACTCACCTAAGAGTCTCGAGGCGGCGGTCCGTCCTGAGTCCCCATATGACGACCCAAAAGACATGCAG GGGGAGATCATTCACAACTCAGATACTAAGCGAGGCTTGAGCTCGCGCCATATTCAATTCTTGGCTCTAGGTGGT TGTATAGGCACGGGTCTTTTTGTTGGCAGTGGCTCAGCGCTGGCGACAGTTGGTCCTGCTCCGTTGCTCATGGGT TATATTGTCATGTCAAGTATTGTATACTTTATCATGAACATGCTTGGAGAAATGACCACCTATCTTCCCGTTCAA GGTGTTTCTGTGCCATATTTGATTACTCGGTTTACGGAACCTAGTCTTGGATTTGCTGTTGGATACAACTACTGG TATTCATTTTCAATGTTGATAGCATCAGAGGTCACTGCGTCAGGGATGGTCATTGAATATTGGCAGTCCCCAGTC AGCGTTGGTGTATGGATTGCGATCATTCTCGTTGTCATTCTACTTCTAAACATTGTCGCGGTGGCCTGGTATGGC GAAGCCGAATTCTGGTTCGCATCACTCAAGATCATCGCGATCGTCGGTCTGATCATCCTGGGTATTGTACTTTTC TTCGGCGGTGGTCCAAACCATGATCGTCTCGGTTTCCGGTACTGGCAACGACCAGGCGCATTTGTGGAACCTTAC TTAGTCCCAAACATCAACACAGGCCGCTTTCTAGCATTCTGGACCGCTATGATCAAGTGCGGATTCTCTTTCATT TTCTCCCCGGAACTGATCACCACTGCTGCCGGCGAGGCTGCCTCGCCACGCCGCAACATCCCCAAGGCGGCAAAG CGGTTTATCTACCGTTTATTTGCATTTTATATCTTGGGCGCATTGGTCATTGGTGTGATAGTCGCATACAATGAC AAGAACCTCCTGCAGGGTGTTGCGAGCGGCAGTTCTGGTGCTGGCGCCAGTCCATTCGTTATTGGCATCCAGAAT GCTGGTATCACTGGATTGAACCACGTTATCAATGCTGTTGTTCTTATCTCTGCCTTTTCCTCGGGTAATTCTTGG GTCTTTGCTGGGTCTCGCACACTTTACTCGCTCGCGGGTGAGGGCCAGGCTCCCAAAATCTTCCTTCGCTGCAAC AAGAATGGTGTCCCGTACAATGCTGTGATAGTCACTTGGATGATCGGTCTGCTGTCTTTCTTGAACCTATCTACT TCGGGTTCAACCGTCTTTTATTGGTTTACCAACATCACGACAATTGGAGGTTTCATCTCTTGGGTCATCGTGGCA GTGGCGTACTTGCGTTGGCGCAGCGCATTGGACTTCCACGGGCTGCTCCCGTCCAGGCCCTTCATTACCCCCATC CAGCCATACGGCGCTTACTATGTTATTGGCTTTATTTCACTCCTGGCTATTACCAATGGCTATACGGTATTCTTC CCAGGCTCTTTCACTGCGTCGGACTTCCTTGTTTCCTACATTGTCTTCGCGATTTTCTTCGTGCTGTACTTTGGC CACAAAATATACTACAAGACGCCATGGATGACCAAGGTATCAGAACTTGACATTTTCACTGGCAAGGATGAGATC GACCGACTTGAAGAGGAGGAGGTAGAGCCGCAGCCACGCAACTGGCTAGAGCGAGTGTGGTGGTGGATTGCATAG |
| Transcript | >Pro_DTO377G3_2|g6664.t1 ATGAAAGACTCACCTAAGAGTCTCGAGGCGGCGGTCCGTCCTGAGTCCCCATATGACGACCCAAAAGACATGCAG GGGGAGATCATTCACAACTCAGATACTAAGCGAGGCTTGAGCTCGCGCCATATTCAATTCTTGGCTCTAGGTGGT TGTATAGGCACGGGTCTTTTTGTTGGCAGTGGCTCAGCGCTGGCGACAGTTGGTCCTGCTCCGTTGCTCATGGGT TATATTGTCATGTCAAGTATTGTATACTTTATCATGAACATGCTTGGAGAAATGACCACCTATCTTCCCGTTCAA GGTGTTTCTGTGCCATATTTGATTACTCGGTTTACGGAACCTAGTCTTGGATTTGCTGTTGGATACAACTACTGG TATTCATTTTCAATGTTGATAGCATCAGAGGTCACTGCGTCAGGGATGGTCATTGAATATTGGCAGTCCCCAGTC AGCGTTGGTGTATGGATTGCGATCATTCTCGTTGTCATTCTACTTCTAAACATTGTCGCGGTGGCCTGGTATGGC GAAGCCGAATTCTGGTTCGCATCACTCAAGATCATCGCGATCGTCGGTCTGATCATCCTGGGTATTGTACTTTTC TTCGGCGGTGGTCCAAACCATGATCGTCTCGGTTTCCGGTACTGGCAACGACCAGGCGCATTTGTGGAACCTTAC TTAGTCCCAAACATCAACACAGGCCGCTTTCTAGCATTCTGGACCGCTATGATCAAGTGCGGATTCTCTTTCATT TTCTCCCCGGAACTGATCACCACTGCTGCCGGCGAGGCTGCCTCGCCACGCCGCAACATCCCCAAGGCGGCAAAG CGGTTTATCTACCGTTTATTTGCATTTTATATCTTGGGCGCATTGGTCATTGGTGTGATAGTCGCATACAATGAC AAGAACCTCCTGCAGGGTGTTGCGAGCGGCAGTTCTGGTGCTGGCGCCAGTCCATTCGTTATTGGCATCCAGAAT GCTGGTATCACTGGATTGAACCACGTTATCAATGCTGTTGTTCTTATCTCTGCCTTTTCCTCGGGTAATTCTTGG GTCTTTGCTGGGTCTCGCACACTTTACTCGCTCGCGGGTGAGGGCCAGGCTCCCAAAATCTTCCTTCGCTGCAAC AAGAATGGTGTCCCGTACAATGCTGTGATAGTCACTTGGATGATCGGTCTGCTGTCTTTCTTGAACCTATCTACT TCGGGTTCAACCGTCTTTTATTGGTTTACCAACATCACGACAATTGGAGGTTTCATCTCTTGGGTCATCGTGGCA GTGGCGTACTTGCGTTGGCGCAGCGCATTGGACTTCCACGGGCTGCTCCCGTCCAGGCCCTTCATTACCCCCATC CAGCCATACGGCGCTTACTATGTTATTGGCTTTATTTCACTCCTGGCTATTACCAATGGCTATACGGTATTCTTC CCAGGCTCTTTCACTGCGTCGGACTTCCTTGTTTCCTACATTGTCTTCGCGATTTTCTTCGTGCTGTACTTTGGC CACAAAATATACTACAAGACGCCATGGATGACCAAGGTATCAGAACTTGACATTTTCACTGGCAAGGATGAGATC GACCGACTTGAAGAGGAGGAGGTAGAGCCGCAGCCACGCAACTGGCTAGAGCGAGTGTGGTGGTGGATTGCATAG |
| Gene | >Pro_DTO377G3_2|g6664.t1 ATGAAAGACTCACCTAAGAGTCTCGAGGCGGCGGTCCGTCCTGAGTCCCCATATGACGACCCAAAAGACATGCAG GGGGAGATCATTCACAACTCAGATACTAAGCGAGGCTTGAGCTCGCGCCATATTCAATTCTTGGCTCTAGGTGGT TGTATAGGCACGGGTCTTTTTGTTGGCAGTGGCTCAGCGCTGGCGACAGTTGGTCCTGGTAAGAATCAGCGTGTG AAACATAAACTTGATATGGGGCTAATATGTGATAGCTCCGTTGCTCATGGGTTATATTGTCATGTCAAGTATTGT ATACTTTATCATGAACATGCTTGGAGAAATGACCACCTATCTTCCCGTTCAAGGTGTTTCTGTGCCATATTTGAT TACTCGGTTTACGGAACCTAGTCTTGGATTTGCTGTTGGTATGTGAAGACACTTTGAAAATTTTTAACAAGCCCA ATGCTGATTCAAATACTACTAGGATACAACTACTGGTAATAACCCTTCGGTCAAGGTCCGAGTTTGTCATACTAA TAAATGCCCTGTGTAGGTATTCATTTTCAATGTTGATAGCATCAGAGGTCACTGCGTCAGGGATGGTCATTGAAT ATTGGCAGTCCCCAGTCAGCGTTGGTGTATGGATTGCGATCATTCTCGTTGGTGGGTACATGCCCAACAGTGCGG TATACCTGATATCCTCTAACGCATGAACTCTAGTCATTCTACTTCTAAACATTGTCGCGGTGGCCTGGTATGGCG AAGCCGAATTCTGGTTCGCATCACTCAAGATCATCGCGATCGTCGGTCTGATCATCCTGGGTATTGTACTTTTCT TCGGCGGTGGTCCAAACCATGATCGTCTCGGTTTCCGGTACTGGCAACGACCAGGCGCATTTGTGGAACCTTACT TAGTCCCAAACATCAACACAGGCCGCTTTCTAGCATTCTGGACCGCTATGATCAAGTGCGGATTCTCTTTCATTT TCTCCCCGGAACTGATCACCACTGCTGCCGGCGAGGCTGCCTCGCCACGCCGCAACATCCCCAAGGCGGCAAAGC GGTTTATCTACCGTTTATTTGCATTTTATATCTTGGGCGCATTGGTCATTGGTGTGATAGTCGCATACAATGACA AGAACCTCCTGCAGGGTGTTGCGAGCGGCAGTTCTGGTGCTGGCGCCAGTCCATTCGTTATTGGCATCCAGAATG CTGGTATCACTGGATTGAACCACGTTATCAATGCTGTTGTTCTTATCTCTGCCTTTTCCTCGGGTAATTCTTGGG TCTTTGCTGGGTCTCGCACACTTTACTCGCTCGCGGGTGAGGGCCAGGCTCCCAAAATCTTCCTTCGCTGCAACA AGAATGGTGTCCCGTACAATGCTGTGATAGTCACTTGGATGATCGGTCTGCTGTCTTTCTTGAACCTATCTACTT CGGGTTCAACCGTCTTTTATTGGTTTACCAACATCACGACAATTGGAGGTTTCATCTCTTGGGTCATCGTGGCAG TGGCGTACTTGGTAAGTTAAATAGCCTTTTTTCCTGTCTTTTTCATGGAATAACTTGCTAACAAATTATTTTAGC GTTGGCGCAGCGCATTGGACTTCCACGGGCTGCTCCCGTCCAGGCCCTTCATTACCCCCATCCAGCCATACGGCG CTTACTATGTTATTGGCTTTATTTCACTCCTGGCTATTACCAATGGCTATACGGTATTCTTCCCAGGCTCTTTCA CTGCGTCGGACTTCCTTGTTTCCTACATTGTCTTCGCGATTTTCTTCGTGCTGTACTTTGGCCACAAAATATACT ACAAGACGCCATGGATGACCAAGGTATCAGAACTTGACATTTTCACTGGCAAGGATGAGATCGACCGACTTGAAG AGGAGGAGGTAGAGCCGCAGCCACGCAACTGGCTAGAGCGAGTGTGGTGGTGGATTGCATAG |