© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g665.t1 |
| Gene name | |
| Location | scaffold_01:1715611..1716224 |
| Strand | + |
| Gene length (bp) | 613 |
| Transcript length (bp) | 561 |
| Coding sequence length (bp) | 561 |
| Protein length (aa) | 187 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF11578 | DUF3237 | Protein of unknown function (DUF3237) | 1.7E-31 | 12 | 171 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 4.63 | 0.55 | 8.70 |
| 5d_25C | Five days - 25 degrees Celsius | 4.42 | 0.38 | 8.46 |
| 7d_25C | Seven days - 25 degrees Celsius | 7.84 | 1.12 | 14.56 |
| 10d_25C | Ten days - 25 degrees Celsius | 4.70 | 0.42 | 8.99 |
| 7d_15C | Seven days - 15 degrees Celsius | 13.47 | 1.21 | 25.73 |
| 7d_30C | Seven days - 30 degrees Celsius | 8.43 | 1.76 | 15.11 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.953921 | no |
| 3d_25C | 7d_25C | 0.322073 | no |
| 3d_25C | 7d_15C | 0.028409 | yes |
| 3d_25C | 7d_30C | 0.225672 | no |
| 3d_25C | 10d_25C | 0.982118 | no |
| 5d_25C | 7d_25C | 0.272632 | no |
| 5d_25C | 7d_15C | 0.022940 | yes |
| 5d_25C | 7d_30C | 0.183143 | no |
| 5d_25C | 10d_25C | 0.936012 | no |
| 7d_25C | 7d_15C | 0.313253 | no |
| 7d_25C | 7d_30C | 0.917212 | no |
| 7d_25C | 10d_25C | 0.329336 | no |
| 7d_15C | 7d_30C | 0.382028 | no |
| 7d_15C | 10d_25C | 0.026832 | yes |
| 7d_30C | 10d_25C | 0.233813 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g665.t1 MEPQTKDPDPLPRLVHIGEIQFNLGEVTTGGVTPRGTFIFCPITGGHFTTVFPLPDGFGIHSEAIEGLRAEVLPG GGDYPLIHNNELAELNVSVVAKGLNNDHIFRITSFGICEWNKLIFDMMGQTAAARSTEMGEINAWQVFRINTDSP EYAWLNWACIIGQERLIYEDSRMAKTHMKLFQFLVK* |
| Coding | >Pro_DTO377G3_2|g665.t1 ATGGAACCTCAAACGAAAGACCCCGACCCCCTACCGCGTCTGGTGCACATAGGCGAAATACAGTTCAACCTGGGC GAAGTGACCACGGGCGGAGTGACGCCGCGAGGAACTTTCATTTTCTGCCCCATAACTGGCGGACACTTTACCACC GTCTTTCCATTACCGGACGGATTCGGCATTCACTCAGAGGCAATCGAAGGTCTGAGGGCAGAGGTGCTTCCAGGT GGCGGCGATTATCCGCTGATACATAACAATGAACTTGCGGAACTGAATGTCAGCGTCGTCGCCAAAGGTCTCAAC AACGATCATATATTCCGTATCACCTCTTTCGGTATATGCGAATGGAACAAACTCATATTCGATATGATGGGCCAG ACAGCCGCCGCACGCTCGACGGAGATGGGGGAAATCAACGCATGGCAGGTTTTTCGTATCAACACTGATAGCCCG GAGTATGCCTGGCTAAACTGGGCATGCATCATTGGGCAGGAGAGACTGATTTACGAAGACAGTCGCATGGCTAAG ACTCACATGAAATTGTTCCAGTTTCTGGTAAAATAG |
| Transcript | >Pro_DTO377G3_2|g665.t1 ATGGAACCTCAAACGAAAGACCCCGACCCCCTACCGCGTCTGGTGCACATAGGCGAAATACAGTTCAACCTGGGC GAAGTGACCACGGGCGGAGTGACGCCGCGAGGAACTTTCATTTTCTGCCCCATAACTGGCGGACACTTTACCACC GTCTTTCCATTACCGGACGGATTCGGCATTCACTCAGAGGCAATCGAAGGTCTGAGGGCAGAGGTGCTTCCAGGT GGCGGCGATTATCCGCTGATACATAACAATGAACTTGCGGAACTGAATGTCAGCGTCGTCGCCAAAGGTCTCAAC AACGATCATATATTCCGTATCACCTCTTTCGGTATATGCGAATGGAACAAACTCATATTCGATATGATGGGCCAG ACAGCCGCCGCACGCTCGACGGAGATGGGGGAAATCAACGCATGGCAGGTTTTTCGTATCAACACTGATAGCCCG GAGTATGCCTGGCTAAACTGGGCATGCATCATTGGGCAGGAGAGACTGATTTACGAAGACAGTCGCATGGCTAAG ACTCACATGAAATTGTTCCAGTTTCTGGTAAAATAG |
| Gene | >Pro_DTO377G3_2|g665.t1 ATGGAACCTCAAACGAAAGACCCCGACCCCCTACCGCGTCTGGTGCACATAGGCGAAATACAGTTCAACCTGGGC GAAGTGACCACGGGCGGAGTGACGCCGCGAGGAACTTTCATTTTCTGCCCCATAACTGGCGGTGAGTTGAAATAT AGAAACACACATTGGACCTGGGGCTGACCCAAAGGCAGGACACTTTACCACCGTCTTTCCATTACCGGACGGATT CGGCATTCACTCAGAGGCAATCGAAGGTCTGAGGGCAGAGGTGCTTCCAGGTGGCGGCGATTATCCGCTGATACA TAACAATGAACTTGCGGAACTGAATGTCAGCGTCGTCGCCAAAGGTCTCAACAACGATCATATATTCCGTATCAC CTCTTTCGGTATATGCGAATGGAACAAACTCATATTCGATATGATGGGCCAGACAGCCGCCGCACGCTCGACGGA GATGGGGGAAATCAACGCATGGCAGGTTTTTCGTATCAACACTGATAGCCCGGAGTATGCCTGGCTAAACTGGGC ATGCATCATTGGGCAGGAGAGACTGATTTACGAAGACAGTCGCATGGCTAAGACTCACATGAAATTGTTCCAGTT TCTGGTAAAATAG |