© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6642.t1 |
| Gene name | |
| Location | scaffold_18:117714..118622 |
| Strand | + |
| Gene length (bp) | 908 |
| Transcript length (bp) | 852 |
| Coding sequence length (bp) | 852 |
| Protein length (aa) | 284 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03061 | 4HBT | Thioesterase superfamily | 3.3E-08 | 161 | 228 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 20 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 22.22 | 9.14 | 35.29 |
| 5d_25C | Five days - 25 degrees Celsius | 20.37 | 8.00 | 32.74 |
| 7d_25C | Seven days - 25 degrees Celsius | 15.37 | 5.80 | 24.94 |
| 10d_25C | Ten days - 25 degrees Celsius | 10.43 | 3.29 | 17.56 |
| 7d_15C | Seven days - 15 degrees Celsius | 11.38 | 3.31 | 19.46 |
| 7d_30C | Seven days - 30 degrees Celsius | 19.24 | 7.86 | 30.61 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.855480 | no |
| 3d_25C | 7d_25C | 0.300794 | no |
| 3d_25C | 7d_15C | 0.062630 | no |
| 3d_25C | 7d_30C | 0.738650 | no |
| 3d_25C | 10d_25C | 0.025128 | yes |
| 5d_25C | 7d_25C | 0.471864 | no |
| 5d_25C | 7d_15C | 0.118029 | no |
| 5d_25C | 7d_30C | 0.911177 | no |
| 5d_25C | 10d_25C | 0.054411 | no |
| 7d_25C | 7d_15C | 0.478388 | no |
| 7d_25C | 7d_30C | 0.579278 | no |
| 7d_25C | 10d_25C | 0.312771 | no |
| 7d_15C | 7d_30C | 0.163150 | no |
| 7d_15C | 10d_25C | 0.880374 | no |
| 7d_30C | 10d_25C | 0.076254 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6642.t1 MSHISQTARRLFRSQPLSAFRTYSPAAPIARLHEQHPNRSAVVHDQALPSQTDGSPLLSQTQSLHNERTGLDKLV SHVPLVQKLRGTQSTYKETRPHLAIPPHLRQHHFVGGSLTGVGKLAFAPYMWLSTGKSGTGTDSADRASSVVSVF HIGQDVCGHPGFVHGGLLTVLFDEVFARCVSAAFPSGLGMTANLNVDFRKPALPDRMYVMRTKTVKVEGRKAWVE GRMTYLPLTVPLSADGHTIVPDASLLHEDSEGAVMVAEAKALFIEPKFADSMVSVYSS* |
| Coding | >Pro_DTO377G3_2|g6642.t1 ATGTCGCACATTTCACAAACAGCGCGTCGGCTGTTCCGGTCGCAACCCCTTTCAGCATTCAGAACATACTCGCCT GCGGCGCCTATTGCCCGTCTCCATGAACAACACCCAAACCGGTCGGCGGTCGTTCATGACCAAGCACTCCCTAGC CAAACCGACGGATCCCCATTACTGTCTCAGACCCAGTCATTGCACAACGAACGGACAGGCCTCGACAAACTTGTT TCCCATGTCCCTCTCGTCCAGAAATTGCGCGGAACCCAGAGCACCTACAAGGAAACACGTCCCCATCTTGCAATC CCGCCACACCTTAGACAGCATCACTTCGTGGGCGGCAGCTTGACTGGTGTAGGCAAGCTTGCATTCGCACCATAT ATGTGGCTCTCGACCGGCAAGTCTGGGACAGGGACCGACAGTGCCGACCGAGCCAGCAGCGTTGTATCAGTATTC CATATCGGCCAGGACGTCTGTGGTCACCCTGGCTTTGTCCATGGTGGTCTTCTCACTGTTCTTTTTGATGAGGTG TTTGCGCGCTGTGTCTCTGCGGCTTTCCCCAGCGGGCTGGGCATGACGGCGAATCTTAATGTGGATTTCCGAAAG CCAGCTCTTCCCGACCGAATGTATGTGATGCGCACAAAGACGGTTAAGGTCGAGGGCAGGAAGGCCTGGGTTGAG GGCCGCATGACTTATCTTCCTTTGACCGTGCCCCTGTCTGCGGACGGGCATACCATTGTTCCTGATGCTAGTCTG CTGCATGAGGACAGTGAAGGCGCGGTAATGGTTGCTGAGGCTAAGGCTTTGTTTATTGAGCCCAAGTTTGCAGAC TCTATGGTGTCGGTTTATTCGAGCTAG |
| Transcript | >Pro_DTO377G3_2|g6642.t1 ATGTCGCACATTTCACAAACAGCGCGTCGGCTGTTCCGGTCGCAACCCCTTTCAGCATTCAGAACATACTCGCCT GCGGCGCCTATTGCCCGTCTCCATGAACAACACCCAAACCGGTCGGCGGTCGTTCATGACCAAGCACTCCCTAGC CAAACCGACGGATCCCCATTACTGTCTCAGACCCAGTCATTGCACAACGAACGGACAGGCCTCGACAAACTTGTT TCCCATGTCCCTCTCGTCCAGAAATTGCGCGGAACCCAGAGCACCTACAAGGAAACACGTCCCCATCTTGCAATC CCGCCACACCTTAGACAGCATCACTTCGTGGGCGGCAGCTTGACTGGTGTAGGCAAGCTTGCATTCGCACCATAT ATGTGGCTCTCGACCGGCAAGTCTGGGACAGGGACCGACAGTGCCGACCGAGCCAGCAGCGTTGTATCAGTATTC CATATCGGCCAGGACGTCTGTGGTCACCCTGGCTTTGTCCATGGTGGTCTTCTCACTGTTCTTTTTGATGAGGTG TTTGCGCGCTGTGTCTCTGCGGCTTTCCCCAGCGGGCTGGGCATGACGGCGAATCTTAATGTGGATTTCCGAAAG CCAGCTCTTCCCGACCGAATGTATGTGATGCGCACAAAGACGGTTAAGGTCGAGGGCAGGAAGGCCTGGGTTGAG GGCCGCATGACTTATCTTCCTTTGACCGTGCCCCTGTCTGCGGACGGGCATACCATTGTTCCTGATGCTAGTCTG CTGCATGAGGACAGTGAAGGCGCGGTAATGGTTGCTGAGGCTAAGGCTTTGTTTATTGAGCCCAAGTTTGCAGAC TCTATGGTGTCGGTTTATTCGAGCTAG |
| Gene | >Pro_DTO377G3_2|g6642.t1 ATGTCGCACATTTCACAAACAGCGCGTCGGCTGTTCCGGTCGCAACCCCTTTCAGCATTCAGAACATACTCGCCT GCGGCGCCTATTGCCCGTCTCCATGAACAACACCCAAACCGGTCGGCGGTCGTTCATGACCAAGCACTCCCTAGC CAAACCGACGGATCCCCATTACTGTCTCAGACCCAGTCATTGCACAACGAACGGACAGGCCTCGACAAACTTGTT TCCCATGTCCCTCTCGTCCAGAAATTGCGCGGAACCCAGAGCACCTACAAGGAAACACGTCCCCATCTTGCAATC CCGCCACACCTTAGACAGCATCACTTCGTGGGCGGCAGCTTGACTGGTGTAGGCAAGCTTGCATTCGCACCATAT ATGTGGCTCTCGACCGGCAAGTCTGGGACAGGGACCGACAGTGCCGACCGAGCCAGCAGCGTTGTATCAGTATTC CATATCGGCCAGGACGTCTGTGGTCACCCTGGCTTTGTCCATGGTGGTCTTCTCACTGTTCTTTTTGATGAGGTG TTTGCGCGCTGTGTCTCTGCGGCTTTCCCCAGCGGGCTGGGCATGACGGCGAATCTTAATGTGGATTTCCGAAAG CCAGCTCTTCCCGACCGAATGTATGTGATGCGCACAAAGACGGTTAAGGTCGAGGGCAGGAAGGCCTGGGTTGAG GGCCGCATGACTTATCTTCCTTTGACCGTGCCCCTGTCTGCGGACGGGCATACCATTGTTCCTGATGCTAGTCTG CTGCATGAGGACAGTGAAGGCGCGGTAATGGTTGCTGAGGCTAAGGCTTTGTTTATTGAGCCCAAGTTTGCAGAC GTGAGTTCCCCTTTATTCTACCCGTATGTGGTAGATTTAGCTAACAGTTTTCACAGTCTATGGTGTCGGTTTATT CGAGCTAG |