© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6636.t1 |
| Gene name | |
| Location | scaffold_18:102588..104094 |
| Strand | - |
| Gene length (bp) | 1506 |
| Transcript length (bp) | 1326 |
| Coding sequence length (bp) | 1326 |
| Protein length (aa) | 442 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00441 | Acyl-CoA_dh_1 | Acyl-CoA dehydrogenase, C-terminal domain | 8.2E-32 | 267 | 424 |
| PF02770 | Acyl-CoA_dh_M | Acyl-CoA dehydrogenase, middle domain | 1.5E-23 | 159 | 255 |
| PF02771 | Acyl-CoA_dh_N | Acyl-CoA dehydrogenase, N-terminal domain | 1.0E-15 | 26 | 155 |
| PF08028 | Acyl-CoA_dh_2 | Acyl-CoA dehydrogenase, C-terminal domain | 5.5E-06 | 291 | 403 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | Yes |
| GO:0050660 | flavin adenine dinucleotide binding | Yes |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0043168 | anion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0036094 | small molecule binding | No |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 11.88 | 4.99 | 18.77 |
| 5d_25C | Five days - 25 degrees Celsius | 10.79 | 4.38 | 17.21 |
| 7d_25C | Seven days - 25 degrees Celsius | 12.35 | 5.27 | 19.43 |
| 10d_25C | Ten days - 25 degrees Celsius | 12.91 | 5.66 | 20.16 |
| 7d_15C | Seven days - 15 degrees Celsius | 18.14 | 8.71 | 27.57 |
| 7d_30C | Seven days - 30 degrees Celsius | 14.74 | 6.67 | 22.82 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.838748 | no |
| 3d_25C | 7d_25C | 0.940717 | no |
| 3d_25C | 7d_15C | 0.187531 | no |
| 3d_25C | 7d_30C | 0.562376 | no |
| 3d_25C | 10d_25C | 0.858676 | no |
| 5d_25C | 7d_25C | 0.758271 | no |
| 5d_25C | 7d_15C | 0.092370 | no |
| 5d_25C | 7d_30C | 0.362361 | no |
| 5d_25C | 10d_25C | 0.651564 | no |
| 7d_25C | 7d_15C | 0.235261 | no |
| 7d_25C | 7d_30C | 0.652739 | no |
| 7d_25C | 10d_25C | 0.928913 | no |
| 7d_15C | 7d_30C | 0.560197 | no |
| 7d_15C | 10d_25C | 0.293757 | no |
| 7d_30C | 10d_25C | 0.746625 | no |
| Orthofinder run ID | 2 |
| Orthogroup | 2518 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6636.t1 MAYNSPNPIPFSEPPYIRGLPSPYITPAHCRFQQACRKFATENLIQYALEWEREGTVPEHVFHTFCKHNMLLPNM PAPLPVDWLKRLGIHDIMGVKVEDWDYIYTGIYCDEMARSGLSGPSGSLNAGFAFGIAPIYKFGSTELQERFLPA LLTGKKRGCIAITEPEAGSDVANITTTAVKSSDGQHYILNGSKKWITNGIWSDYATMAVRTGGPGAAGLSVLVVP LKGHPGVSMRRLKVSGQITGGTTYIELDDVKVPVSNIIGQEGDGMRIIMTNFNHERLVIAVGVTRQARVALSAAF SYCLKREAFGKTLMDQPVVRHRLAKAGAELESMWAWIEQILYQLVHLSKEEGDRQLGGLTALAKAKSAMVLNECA QTAVLLFGGSGFTKSGQGELVEAILRDVPGARIPGGSEDVLLDLSVRQLVKLYQAEEKKLSPDAKI* |
| Coding | >Pro_DTO377G3_2|g6636.t1 ATGGCATATAACTCACCAAATCCCATCCCGTTCTCAGAGCCGCCTTACATTCGTGGCCTCCCTTCTCCCTACATT ACGCCTGCCCACTGCCGCTTTCAACAAGCATGTCGTAAATTTGCAACAGAAAACTTGATTCAGTATGCGTTGGAG TGGGAGCGTGAAGGAACAGTCCCCGAGCATGTCTTCCACACATTCTGCAAGCATAATATGCTGTTGCCCAACATG CCAGCCCCATTACCCGTGGACTGGCTGAAGCGACTGGGAATCCACGATATCATGGGTGTCAAGGTTGAAGACTGG GACTATATCTACACTGGAATTTACTGTGATGAGATGGCCCGTTCCGGTCTCAGTGGCCCCTCCGGCTCTCTGAAT GCTGGCTTCGCTTTTGGAATTGCACCAATCTATAAATTTGGCAGTACTGAGCTGCAAGAGCGGTTCTTGCCTGCG CTCCTCACAGGTAAGAAGCGAGGCTGCATTGCTATCACAGAGCCCGAGGCTGGTAGTGATGTCGCAAATATCACC ACAACAGCTGTCAAGAGTTCCGATGGACAGCACTACATCCTGAACGGATCAAAGAAATGGATCACGAATGGTATC TGGTCGGATTATGCGACCATGGCCGTGCGAACCGGTGGACCAGGAGCCGCGGGCCTTTCGGTTTTGGTTGTACCT CTAAAGGGCCACCCCGGTGTCTCAATGCGCCGACTCAAAGTCTCAGGTCAGATCACAGGCGGGACCACATACATT GAGCTCGACGACGTCAAGGTTCCTGTATCAAACATTATTGGTCAAGAAGGAGACGGCATGCGTATCATAATGACC AACTTCAACCATGAGCGACTTGTTATTGCCGTTGGAGTTACTCGGCAGGCTCGTGTGGCCCTTTCTGCGGCTTTT TCATACTGCCTCAAGCGTGAGGCTTTTGGAAAGACACTCATGGACCAACCCGTGGTCCGCCACCGTCTAGCTAAG GCAGGCGCCGAGCTGGAATCCATGTGGGCGTGGATTGAGCAGATCTTGTACCAATTGGTCCATCTCAGCAAAGAG GAAGGTGACCGCCAACTTGGTGGTTTGACGGCCCTGGCTAAAGCAAAGTCTGCTATGGTTTTGAATGAGTGTGCC CAAACAGCCGTGTTGTTGTTTGGGGGGAGTGGATTTACCAAATCTGGTCAGGGTGAATTGGTCGAAGCCATTCTT CGCGATGTTCCTGGTGCCCGTATTCCGGGTGGATCAGAAGATGTGCTGCTTGATTTGTCTGTGCGTCAATTGGTC AAGCTCTATCAGGCTGAAGAGAAGAAGTTGTCACCAGACGCCAAGATTTGA |
| Transcript | >Pro_DTO377G3_2|g6636.t1 ATGGCATATAACTCACCAAATCCCATCCCGTTCTCAGAGCCGCCTTACATTCGTGGCCTCCCTTCTCCCTACATT ACGCCTGCCCACTGCCGCTTTCAACAAGCATGTCGTAAATTTGCAACAGAAAACTTGATTCAGTATGCGTTGGAG TGGGAGCGTGAAGGAACAGTCCCCGAGCATGTCTTCCACACATTCTGCAAGCATAATATGCTGTTGCCCAACATG CCAGCCCCATTACCCGTGGACTGGCTGAAGCGACTGGGAATCCACGATATCATGGGTGTCAAGGTTGAAGACTGG GACTATATCTACACTGGAATTTACTGTGATGAGATGGCCCGTTCCGGTCTCAGTGGCCCCTCCGGCTCTCTGAAT GCTGGCTTCGCTTTTGGAATTGCACCAATCTATAAATTTGGCAGTACTGAGCTGCAAGAGCGGTTCTTGCCTGCG CTCCTCACAGGTAAGAAGCGAGGCTGCATTGCTATCACAGAGCCCGAGGCTGGTAGTGATGTCGCAAATATCACC ACAACAGCTGTCAAGAGTTCCGATGGACAGCACTACATCCTGAACGGATCAAAGAAATGGATCACGAATGGTATC TGGTCGGATTATGCGACCATGGCCGTGCGAACCGGTGGACCAGGAGCCGCGGGCCTTTCGGTTTTGGTTGTACCT CTAAAGGGCCACCCCGGTGTCTCAATGCGCCGACTCAAAGTCTCAGGTCAGATCACAGGCGGGACCACATACATT GAGCTCGACGACGTCAAGGTTCCTGTATCAAACATTATTGGTCAAGAAGGAGACGGCATGCGTATCATAATGACC AACTTCAACCATGAGCGACTTGTTATTGCCGTTGGAGTTACTCGGCAGGCTCGTGTGGCCCTTTCTGCGGCTTTT TCATACTGCCTCAAGCGTGAGGCTTTTGGAAAGACACTCATGGACCAACCCGTGGTCCGCCACCGTCTAGCTAAG GCAGGCGCCGAGCTGGAATCCATGTGGGCGTGGATTGAGCAGATCTTGTACCAATTGGTCCATCTCAGCAAAGAG GAAGGTGACCGCCAACTTGGTGGTTTGACGGCCCTGGCTAAAGCAAAGTCTGCTATGGTTTTGAATGAGTGTGCC CAAACAGCCGTGTTGTTGTTTGGGGGGAGTGGATTTACCAAATCTGGTCAGGGTGAATTGGTCGAAGCCATTCTT CGCGATGTTCCTGGTGCCCGTATTCCGGGTGGATCAGAAGATGTGCTGCTTGATTTGTCTGTGCGTCAATTGGTC AAGCTCTATCAGGCTGAAGAGAAGAAGTTGTCACCAGACGCCAAGATTTGA |
| Gene | >Pro_DTO377G3_2|g6636.t1 ATGGCATATAACTCACCAAATCCCATCCCGTTCTCAGAGCCGCCTTACATTCGTGGCCTCCCTTCTCCCTACATT ACGCCTGCCCACTGCCGCTTTCAACAAGCATGTCGTAAATTTGCAACAGAAAACTTGATTCAGTATGCGTTGGAG TGGGAGCGTGAAGGAACAGTCCCCGAGCATGTCTTCCACACATTCTGCAAGCATAATATGCTGTTGCCCAACATG CCAGCCCCATTACCCGTGGACTGGCTGAAGCGACTGGGAATCCACGATATCATGGGTGTCAAGGTTGAAGACTGG GACTATATCTACACTGGAATTTACTGTGATGAGGTACGCCATGAGCATCAGCTATCTAACTACGCTTTATAATTG CTAGGTAATTGACCGATGGTTTGCCAATAGATGGCCCGTTCCGGTCTCAGTGGCCCCTCCGGCTCTCTGAATGCT GGCTTCGCTTTTGGAATTGCACCAATCTATAAATTTGGCAGTACTGAGCTGCAAGAGCGGTTCTTGCCTGCGCTC CTCACAGGTAAGAAGCGAGGCTGCATTGCTATCACAGAGCCCGAGGCTGGTAGTGATGTCGCAAATATCACCACA ACAGCTGTCAAGAGTTCCGATGGACAGCACTACATCCTGAACGGATCAAAGAAATGGCAAGAGACAACTCTACAG TAATAATAGAGCTATGAGCTGACACCAATAACCAGGATCACGAATGGTATCTGGTCGGATTATGCGACCATGGCC GTGCGAACCGGTGGACCAGGAGCCGCGGGCCTTTCGGTTTTGGTTGTACCTCTAAAGGGCCACCCCGGTGTCTCA ATGCGCCGACTCAAAGTCTCAGGTCAGATCACAGGCGGGACCACATACATTGAGCTCGACGACGTCAAGGTTCCT GTATCAAACATTATTGGTCAAGAAGGAGACGGCATGCGTATCATAATGACCAACTTCAACCATGAGCGACTTGTT ATTGCCGTTGGAGTTACTCGGCAGGCTCGTGTGGCCCTTTCTGCGGCTTTTTCATACTGCCTCAAGCGTGAGGCT TTTGGAAAGACACTCATGGACCAACCCGTGGTCCGCCACCGTCTAGCTAAGGCAGGCGCCGAGCTGGAATCCATG TGGGCGTGGATTGAGCAGATCTTGTACCAATTGGTCCATCTCAGCAAAGAGGAAGGTGACCGCCAACTTGGTGGT TTGACGGCCCTGGCTAAAGCAAAGTCTGCTATGGTTTTGAATGAGTGTGCCCAAACAGCCGTGTTGTTGTTTGGG GGGAGTGGATTTACCAAATCTGGTCAGGGTGAATTGGTCGAAGGTATGTTCGCCGGAGTATTGGTATGTACTTGG AACAAGCTAACTATGCCTCTAGCCATTCTTCGCGATGTTCCTGGTGCCCGTATTCCGGGTGGATCAGAAGATGTG CTGCTTGATTTGTCTGTGCGTCAATTGGTCAAGCTCTATCAGGCTGAAGAGAAGAAGTTGTCACCAGACGCCAAG ATTTGA |