© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g661.t1 |
| Gene name | |
| Location | scaffold_01:1706894..1708610 |
| Strand | + |
| Gene length (bp) | 1716 |
| Transcript length (bp) | 1539 |
| Coding sequence length (bp) | 1539 |
| Protein length (aa) | 513 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01565 | FAD_binding_4 | FAD binding domain | 1.5E-19 | 67 | 201 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0050660 | flavin adenine dinucleotide binding | Yes |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0043168 | anion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0036094 | small molecule binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 20 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 2.08 | 0.42 | 3.74 |
| 5d_25C | Five days - 25 degrees Celsius | 0.86 | 0.00 | 1.80 |
| 7d_25C | Seven days - 25 degrees Celsius | 2.60 | 0.39 | 4.81 |
| 10d_25C | Ten days - 25 degrees Celsius | 1.53 | 0.08 | 2.98 |
| 7d_15C | Seven days - 15 degrees Celsius | 6.16 | 1.44 | 10.88 |
| 7d_30C | Seven days - 30 degrees Celsius | 4.08 | 1.02 | 7.14 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.128009 | no |
| 3d_25C | 7d_25C | 0.707091 | no |
| 3d_25C | 7d_15C | 0.008133 | yes |
| 3d_25C | 7d_30C | 0.123554 | no |
| 3d_25C | 10d_25C | 0.614093 | no |
| 5d_25C | 7d_25C | 0.054411 | no |
| 5d_25C | 7d_15C | 0.000700 | yes |
| 5d_25C | 7d_30C | 0.009124 | yes |
| 5d_25C | 10d_25C | 0.389166 | no |
| 7d_25C | 7d_15C | 0.052179 | no |
| 7d_25C | 7d_30C | 0.375549 | no |
| 7d_25C | 10d_25C | 0.359096 | no |
| 7d_15C | 7d_30C | 0.384047 | no |
| 7d_15C | 10d_25C | 0.004045 | yes |
| 7d_30C | 10d_25C | 0.049004 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g661.t1 MLSLKAFLALSLSIHLSQGLVASVSHRRANACTELSRSYPDSTIHPGSSVFAEDVIEPWSQTCQTTPTCVFAPAS AEEVAGGLAILRKADQTFAVRTQGHMPIPGAADISNGVLMVTTSLNSVQYADDSKSVVQIGAGNRWLDVYKVLAK DNLAVVGGRFGQVGVSGLLLGGGISYFNSDHGWGANSVVNYEVVLANGTVCAANAQQNSDLYWALKGGSFNFGIV TRFDLATFSVPYMWGGSAFYDASALDPLVNAYASYAVASGGSSDPAAHSDPSILYNVTTGEVSGYGIYMHRGDDP APAALKNFTDIPSTFQDFRVGKTILGLENDTTPVNFGVGNRRQLFSSTALASSAEAVYLVNQTFFDVIAANPQIK TTTDLSVTNTYQLFTPGMIRAAKASGGDPIGLYDPLGNGVLAVLYGGNWADAKDDEIIYKFFQDMIDELDNRAKK LGLYYDFVYLNDAAPTQTKDIFQKFSNGTALPKLREIAESYDPDQVFQTLTPGGFKLINSPA* |
| Coding | >Pro_DTO377G3_2|g661.t1 ATGCTTTCTCTTAAAGCTTTTTTGGCCCTTTCTCTGTCTATTCATCTTAGCCAGGGTCTTGTGGCTAGCGTCTCG CACCGTCGCGCTAATGCATGCACTGAGCTCTCACGAAGCTACCCTGACAGTACCATTCACCCTGGATCTTCAGTC TTTGCCGAAGATGTAATTGAGCCCTGGTCTCAGACTTGTCAAACTACGCCCACGTGTGTTTTTGCCCCAGCTTCG GCCGAGGAAGTAGCCGGTGGCTTGGCTATCCTTCGTAAAGCCGACCAGACCTTTGCTGTTCGCACCCAAGGGCAT ATGCCCATTCCTGGCGCTGCCGACATCAGCAATGGCGTGCTCATGGTTACCACTAGCCTGAATAGCGTACAGTAC GCAGACGACTCTAAATCTGTTGTCCAGATTGGCGCAGGAAACCGTTGGCTGGACGTTTACAAAGTGCTTGCCAAA GACAACCTTGCCGTTGTCGGTGGACGCTTTGGACAGGTCGGAGTGTCTGGCCTTCTGCTTGGTGGAGGTATCTCT TATTTCAACAGCGACCACGGTTGGGGAGCGAACAGTGTCGTCAATTACGAAGTTGTGCTCGCCAACGGTACTGTA TGCGCGGCAAATGCGCAACAGAACTCCGACTTGTACTGGGCCTTAAAGGGCGGTTCTTTCAACTTTGGTATTGTC ACACGTTTCGATTTGGCAACCTTTTCGGTTCCATACATGTGGGGGGGTAGCGCTTTCTACGACGCCTCGGCTTTG GATCCCTTGGTCAACGCATACGCAAGCTACGCTGTCGCATCCGGTGGTTCCAGCGATCCTGCAGCTCATTCTGAT CCCTCGATCCTGTACAACGTGACTACTGGCGAGGTATCGGGCTATGGTATCTATATGCACAGAGGTGACGACCCG GCACCTGCTGCTCTCAAGAACTTCACCGATATACCTTCTACATTCCAGGACTTCCGTGTTGGAAAGACAATTCTG GGCCTGGAGAACGACACGACTCCTGTGAACTTTGGAGTAGGAAATCGGAGACAGCTTTTTTCGTCCACTGCTTTG GCTTCCAGCGCTGAGGCAGTGTACTTGGTCAACCAGACTTTCTTCGACGTGATTGCAGCAAACCCACAGATCAAG ACCACGACGGATCTCAGCGTCACCAATACCTATCAGCTTTTCACCCCTGGTATGATCAGAGCCGCAAAAGCCTCG GGTGGAGATCCGATAGGGCTCTACGACCCACTCGGCAACGGGGTTCTGGCTGTTCTGTACGGCGGTAACTGGGCC GATGCCAAGGATGATGAGATAATCTACAAGTTCTTCCAAGACATGATCGATGAGCTCGACAACAGGGCGAAGAAG TTGGGCCTTTACTATGATTTTGTTTACTTGAACGACGCAGCACCCACTCAGACCAAGGACATCTTCCAGAAGTTC TCGAACGGAACAGCTTTGCCGAAACTGCGGGAGATCGCTGAGAGCTATGATCCAGACCAGGTCTTCCAAACTTTG ACTCCTGGCGGCTTCAAGCTCATCAACAGCCCAGCATGA |
| Transcript | >Pro_DTO377G3_2|g661.t1 ATGCTTTCTCTTAAAGCTTTTTTGGCCCTTTCTCTGTCTATTCATCTTAGCCAGGGTCTTGTGGCTAGCGTCTCG CACCGTCGCGCTAATGCATGCACTGAGCTCTCACGAAGCTACCCTGACAGTACCATTCACCCTGGATCTTCAGTC TTTGCCGAAGATGTAATTGAGCCCTGGTCTCAGACTTGTCAAACTACGCCCACGTGTGTTTTTGCCCCAGCTTCG GCCGAGGAAGTAGCCGGTGGCTTGGCTATCCTTCGTAAAGCCGACCAGACCTTTGCTGTTCGCACCCAAGGGCAT ATGCCCATTCCTGGCGCTGCCGACATCAGCAATGGCGTGCTCATGGTTACCACTAGCCTGAATAGCGTACAGTAC GCAGACGACTCTAAATCTGTTGTCCAGATTGGCGCAGGAAACCGTTGGCTGGACGTTTACAAAGTGCTTGCCAAA GACAACCTTGCCGTTGTCGGTGGACGCTTTGGACAGGTCGGAGTGTCTGGCCTTCTGCTTGGTGGAGGTATCTCT TATTTCAACAGCGACCACGGTTGGGGAGCGAACAGTGTCGTCAATTACGAAGTTGTGCTCGCCAACGGTACTGTA TGCGCGGCAAATGCGCAACAGAACTCCGACTTGTACTGGGCCTTAAAGGGCGGTTCTTTCAACTTTGGTATTGTC ACACGTTTCGATTTGGCAACCTTTTCGGTTCCATACATGTGGGGGGGTAGCGCTTTCTACGACGCCTCGGCTTTG GATCCCTTGGTCAACGCATACGCAAGCTACGCTGTCGCATCCGGTGGTTCCAGCGATCCTGCAGCTCATTCTGAT CCCTCGATCCTGTACAACGTGACTACTGGCGAGGTATCGGGCTATGGTATCTATATGCACAGAGGTGACGACCCG GCACCTGCTGCTCTCAAGAACTTCACCGATATACCTTCTACATTCCAGGACTTCCGTGTTGGAAAGACAATTCTG GGCCTGGAGAACGACACGACTCCTGTGAACTTTGGAGTAGGAAATCGGAGACAGCTTTTTTCGTCCACTGCTTTG GCTTCCAGCGCTGAGGCAGTGTACTTGGTCAACCAGACTTTCTTCGACGTGATTGCAGCAAACCCACAGATCAAG ACCACGACGGATCTCAGCGTCACCAATACCTATCAGCTTTTCACCCCTGGTATGATCAGAGCCGCAAAAGCCTCG GGTGGAGATCCGATAGGGCTCTACGACCCACTCGGCAACGGGGTTCTGGCTGTTCTGTACGGCGGTAACTGGGCC GATGCCAAGGATGATGAGATAATCTACAAGTTCTTCCAAGACATGATCGATGAGCTCGACAACAGGGCGAAGAAG TTGGGCCTTTACTATGATTTTGTTTACTTGAACGACGCAGCACCCACTCAGACCAAGGACATCTTCCAGAAGTTC TCGAACGGAACAGCTTTGCCGAAACTGCGGGAGATCGCTGAGAGCTATGATCCAGACCAGGTCTTCCAAACTTTG ACTCCTGGCGGCTTCAAGCTCATCAACAGCCCAGCATGA |
| Gene | >Pro_DTO377G3_2|g661.t1 ATGCTTTCTCTTAAAGCTTTTTTGGCCCTTTCTCTGTCTATTCATCTTAGCCAGGGTCTTGTGGCTAGCGTCTCG CACCGTCGCGCTAATGCATGCACTGAGCTCTCACGAAGCTACCCTGACAGTACCATTCACCCTGGATCTTCAGTC TTTGCCGAAGATGTAATTGGTAATGATCTTCTCTCTATGCATGTCAAGCCCCCCACGCGGAAAGGAGGCTAACAC TTGATGGTGTAGAGCCCTGGTCTCAGACTTGTCAAACTACGCCCACGTGTGTTTTTGCCCCAGCTTCGGCCGAGG AAGTAGCCGGTGGCTTGGCTATCCTTCGTAAAGCCGACCAGACCTTTGCTGTTCGCACCCAAGGGCATATGCCCA TTCCTGGCGCTGCCGACATCAGCAATGGCGTGCTCATGGTTACCACTAGCCTGAATAGCGTACAGTACGCAGACG ACTCTAAATCTGTTGTCCAGATTGGCGCAGGAAACCGTTGGCTGGACGTTTACAAAGTGCTTGCCAAAGACAACC TTGCCGTTGTCGGTGGACGCTTTGGACAGGTCGGAGTGTCTGGCCTTCTGCTTGGTGGAGGTATCTCTTATTTCA ACAGCGGTATGTTAACGACCGGTCACTTCCATGAAAAATTGAACTAATTGAGCAAGACCACGGTTGGGGAGCGAA CAGTGTCGTCAATTACGAAGTTGTGCTCGCCAACGGTACTGTATGCGCGGCAAATGCGCAACAGAACTCCGACTT GTACTGGGCCTTAAAGGGCGGTTCTTTCAACTTTGGTATTGTCACACGTTTCGATTTGGCAACCTTTTCGGTTCC ATACATGTGGGGGGGTAGCGCTTTCTACGACGCCTCGGCTTTGGATCCCTTGGTCAACGCATACGCAAGCTACGC TGTCGCATCCGGTGGTTCCAGCGATCCTGCAGCTCATTCTGATCCCTCGATCCTGTACAACGTGACTACTGGCGA GGTATCGGGCTATGGTATCTATATGCACAGAGGTGACGACCCGGCACCTGCTGCTCTCAAGAACTTCACCGATAT ACCTTCTACATTCCAGGACTTCCGTGTTGGAAAGACAATTCTGGGCCTGGAGAACGACACGACTCCTGTGAACTT TGGAGTAGGAAATCGGAGACAGCTTTTTTCGTCCACTGCTTTGGCTTCCAGCGCTGAGGCAGTGTACTTGGTCAA CCAGACTTTCTTCGACGTGATTGCAGCAAACCCACAGATCAAGACCACGACGGATCTCAGCGTCACCAATACCTA TCAGCTTTTCACCCCTGGTATGATCAGAGCCGCAAAAGCCTCGGGTGGAGATCCGATAGGGCTCTACGACCCACT CGGCAACGGGGTTCTGGGTAAGCATCTTGCGACTGTGTCTAAAATTACCCAGTTCATGAACTAACTTCTTCACTA GCTGTTCTGTACGGCGGTAACTGGGCCGATGCCAAGGATGATGAGATAATCTACAAGTTCTTCCAAGACATGATC GATGAGCTCGACAACAGGGCGAAGAAGTTGGGCCTTTACTATGATTTTGTTTACTTGAACGACGCAGCACCCACT CAGACCAAGGACATCTTCCAGAAGTTCTCGAACGGAACAGCTTTGCCGAAACTGCGGGAGATCGCTGAGAGCTAT GATCCAGACCAGGTCTTCCAAACTTTGACTCCTGGCGGCTTCAAGCTCATCAACAGCCCAGCATGA |