Protein ID | Pro_DTO377G3_2|g6595.t1 |
Gene name | |
Location | scaffold_18:15836..18325 |
Strand | - |
Gene length (bp) | 2489 |
Transcript length (bp) | 1806 |
Coding sequence length (bp) | 1806 |
Protein length (aa) | 602 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF02776 | TPP_enzyme_N | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 9.2E-41 | 31 | 211 |
PF02775 | TPP_enzyme_C | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 3.1E-22 | 439 | 592 |
PF00205 | TPP_enzyme_M | Thiamine pyrophosphate enzyme, central domain | 1.2E-07 | 235 | 338 |
GO Term | Description | Terminal node |
---|---|---|
GO:0000287 | magnesium ion binding | Yes |
GO:0003824 | catalytic activity | Yes |
GO:0030976 | thiamine pyrophosphate binding | Yes |
GO:0097159 | organic cyclic compound binding | No |
GO:0005488 | binding | No |
GO:0043167 | ion binding | No |
GO:1901681 | sulfur compound binding | No |
GO:0050997 | quaternary ammonium group binding | No |
GO:0019842 | vitamin binding | No |
GO:0046872 | metal ion binding | No |
GO:0043168 | anion binding | No |
GO:1901363 | heterocyclic compound binding | No |
GO:0043169 | cation binding | No |
GO:0003674 | molecular_function | No |
GO:0036094 | small molecule binding | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 70 | 0.45 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
3d_25C | Three days - 25 degrees Celsius | 33.53 | 19.37 | 47.70 |
5d_25C | Five days - 25 degrees Celsius | 24.14 | 13.07 | 35.20 |
7d_25C | Seven days - 25 degrees Celsius | 23.56 | 12.35 | 34.76 |
10d_25C | Ten days - 25 degrees Celsius | 11.01 | 4.80 | 17.22 |
7d_15C | Seven days - 15 degrees Celsius | 16.55 | 7.42 | 25.68 |
7d_30C | Seven days - 30 degrees Celsius | 36.66 | 20.74 | 52.58 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
3d_25C | 5d_25C | 0.202164 | no |
3d_25C | 7d_25C | 0.168081 | no |
3d_25C | 7d_15C | 0.006000 | yes |
3d_25C | 7d_30C | 0.782278 | no |
3d_25C | 10d_25C | 0.000700 | yes |
5d_25C | 7d_25C | 0.952800 | no |
5d_25C | 7d_15C | 0.196290 | no |
5d_25C | 7d_30C | 0.084264 | no |
5d_25C | 10d_25C | 0.005235 | yes |
7d_25C | 7d_15C | 0.237706 | no |
7d_25C | 7d_30C | 0.069866 | no |
7d_25C | 10d_25C | 0.007779 | yes |
7d_15C | 7d_30C | 0.001278 | yes |
7d_15C | 10d_25C | 0.212879 | no |
7d_30C | 10d_25C | 0.000700 | yes |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Pro_DTO377G3_2|g6595.t1 MKSTTTVPQKRKKEDSDDEDDIVKDGSLTSAADNFFEALFEAGITYCFVNLGSDHPAMLEAMIKAKQENKPNFPR IITCPSELVALSAALGYAQATGVPQCVIVHVDCGTLAMGQSIHNASVSRVPVLCFAGLSPFTQNGELLGSRTEFI HWLQDVPDQAAIVRQYCRYTGEIKTGRNIKQMVSRALQFATSDPKGPAYLMAAREVLEERVGNESLDGEILSSIT PSALPEQEVELIAKSLMSAKRPLVITSYLGRNLKAPALLAELCDKLPITVVEMVGSDVCLRSDHEAYRGVTVTTH PEVLQADVILILDCDVPWIPTAGKPRSGARVFHLDVDPLKQQMPLFSINATRKLKVGCGIALGQINAFLDKQDID RAKYTLEFEERSTNYKTWRETLQALESPSKDGVVSVPYLASRLRKSLPQNTIYVLEAVTNAGHLIHHLNLTKPGS LIASGAGGLGWGGGAALGVKLGKPGSFICAIVGDGVYLFSQMESVYWIARRYNIPFLLVVLNNGGWNAPKVSALL VHKDGLSSKSNRRDLNISFDPSPDYPGIAAAAGKAWGATVTTRSELDPAIKQATEVVQSGKCAVVEVSVPSMWKE N* |
Coding | >Pro_DTO377G3_2|g6595.t1 ATGAAGTCGACAACTACAGTACCCCAGAAACGAAAGAAGGAAGACAGCGATGATGAGGATGATATTGTCAAAGAT GGCAGCCTCACATCCGCTGCTGACAATTTCTTCGAGGCACTGTTTGAGGCCGGTATCACATACTGCTTCGTCAAC CTAGGGAGCGACCATCCCGCGATGTTGGAAGCAATGATCAAGGCTAAGCAAGAAAACAAACCCAATTTTCCGAGA ATCATTACCTGCCCTTCTGAGCTAGTTGCCCTATCAGCTGCACTGGGATATGCTCAAGCTACAGGGGTTCCGCAA TGCGTAATTGTGCATGTCGACTGCGGCACTCTTGCTATGGGACAGTCCATACATAATGCCTCCGTCAGCAGAGTT CCTGTTTTGTGCTTTGCTGGTTTGAGCCCTTTTACTCAGAATGGCGAGTTGTTGGGTTCCAGAACTGAGTTCATC CATTGGCTACAAGACGTACCTGATCAAGCAGCGATTGTTCGACAATACTGCAGATACACGGGTGAAATAAAGACC GGACGCAATATCAAACAAATGGTCTCGCGAGCTTTGCAGTTTGCTACATCTGATCCCAAAGGTCCGGCATATCTA ATGGCTGCGAGAGAGGTACTCGAGGAACGTGTGGGAAATGAATCTCTAGACGGTGAAATTCTCAGTTCGATCACC CCAAGTGCATTGCCAGAGCAAGAGGTAGAATTGATTGCCAAGTCGCTGATGAGCGCAAAGCGACCGCTTGTCATT ACAAGTTATCTTGGTCGGAATCTCAAAGCGCCAGCCCTCTTAGCCGAACTTTGTGATAAACTTCCAATTACCGTC GTGGAGATGGTCGGCTCTGACGTTTGCCTCCGGAGTGACCACGAAGCATATCGCGGCGTTACCGTCACTACTCAT CCGGAAGTTCTTCAAGCTGATGTTATTCTTATTCTTGATTGTGATGTGCCCTGGATTCCTACTGCTGGAAAGCCT CGGAGTGGGGCAAGGGTATTCCATCTAGATGTCGATCCGTTGAAGCAACAGATGCCACTCTTTTCAATCAATGCC ACTCGCAAGCTCAAGGTTGGCTGTGGAATTGCGCTTGGGCAAATCAATGCCTTCTTGGATAAACAGGATATCGAC CGGGCTAAGTATACCCTGGAGTTTGAGGAGCGGTCAACTAACTACAAAACCTGGAGGGAAACTTTACAAGCACTT GAATCACCGTCGAAAGATGGTGTAGTCAGTGTGCCATATCTGGCATCGAGACTGCGAAAGTCTCTCCCCCAAAAC ACTATTTACGTTTTGGAGGCTGTAACCAATGCAGGACACCTCATCCACCATTTGAACTTGACTAAGCCGGGAAGT CTGATTGCCAGCGGCGCAGGTGGTCTAGGATGGGGAGGTGGTGCAGCACTGGGCGTCAAGCTAGGCAAGCCCGGC TCATTCATATGTGCAATCGTCGGCGACGGAGTCTATCTATTCTCGCAGATGGAAAGCGTATATTGGATCGCCAGA CGCTACAATATCCCCTTCCTCCTCGTTGTGCTTAACAATGGCGGATGGAACGCACCAAAGGTGTCCGCACTTCTG GTTCACAAGGACGGGTTATCATCGAAGTCGAATAGACGAGATCTCAATATCTCGTTCGACCCTTCTCCCGATTAC CCCGGTATCGCTGCTGCAGCAGGTAAGGCGTGGGGTGCGACAGTTACCACGCGAAGCGAGCTTGATCCTGCTATC AAACAGGCAACAGAAGTTGTTCAAAGTGGGAAATGTGCTGTGGTTGAGGTTTCTGTTCCGTCTATGTGGAAAGAG AACTAG |
Transcript | >Pro_DTO377G3_2|g6595.t1 ATGAAGTCGACAACTACAGTACCCCAGAAACGAAAGAAGGAAGACAGCGATGATGAGGATGATATTGTCAAAGAT GGCAGCCTCACATCCGCTGCTGACAATTTCTTCGAGGCACTGTTTGAGGCCGGTATCACATACTGCTTCGTCAAC CTAGGGAGCGACCATCCCGCGATGTTGGAAGCAATGATCAAGGCTAAGCAAGAAAACAAACCCAATTTTCCGAGA ATCATTACCTGCCCTTCTGAGCTAGTTGCCCTATCAGCTGCACTGGGATATGCTCAAGCTACAGGGGTTCCGCAA TGCGTAATTGTGCATGTCGACTGCGGCACTCTTGCTATGGGACAGTCCATACATAATGCCTCCGTCAGCAGAGTT CCTGTTTTGTGCTTTGCTGGTTTGAGCCCTTTTACTCAGAATGGCGAGTTGTTGGGTTCCAGAACTGAGTTCATC CATTGGCTACAAGACGTACCTGATCAAGCAGCGATTGTTCGACAATACTGCAGATACACGGGTGAAATAAAGACC GGACGCAATATCAAACAAATGGTCTCGCGAGCTTTGCAGTTTGCTACATCTGATCCCAAAGGTCCGGCATATCTA ATGGCTGCGAGAGAGGTACTCGAGGAACGTGTGGGAAATGAATCTCTAGACGGTGAAATTCTCAGTTCGATCACC CCAAGTGCATTGCCAGAGCAAGAGGTAGAATTGATTGCCAAGTCGCTGATGAGCGCAAAGCGACCGCTTGTCATT ACAAGTTATCTTGGTCGGAATCTCAAAGCGCCAGCCCTCTTAGCCGAACTTTGTGATAAACTTCCAATTACCGTC GTGGAGATGGTCGGCTCTGACGTTTGCCTCCGGAGTGACCACGAAGCATATCGCGGCGTTACCGTCACTACTCAT CCGGAAGTTCTTCAAGCTGATGTTATTCTTATTCTTGATTGTGATGTGCCCTGGATTCCTACTGCTGGAAAGCCT CGGAGTGGGGCAAGGGTATTCCATCTAGATGTCGATCCGTTGAAGCAACAGATGCCACTCTTTTCAATCAATGCC ACTCGCAAGCTCAAGGTTGGCTGTGGAATTGCGCTTGGGCAAATCAATGCCTTCTTGGATAAACAGGATATCGAC CGGGCTAAGTATACCCTGGAGTTTGAGGAGCGGTCAACTAACTACAAAACCTGGAGGGAAACTTTACAAGCACTT GAATCACCGTCGAAAGATGGTGTAGTCAGTGTGCCATATCTGGCATCGAGACTGCGAAAGTCTCTCCCCCAAAAC ACTATTTACGTTTTGGAGGCTGTAACCAATGCAGGACACCTCATCCACCATTTGAACTTGACTAAGCCGGGAAGT CTGATTGCCAGCGGCGCAGGTGGTCTAGGATGGGGAGGTGGTGCAGCACTGGGCGTCAAGCTAGGCAAGCCCGGC TCATTCATATGTGCAATCGTCGGCGACGGAGTCTATCTATTCTCGCAGATGGAAAGCGTATATTGGATCGCCAGA CGCTACAATATCCCCTTCCTCCTCGTTGTGCTTAACAATGGCGGATGGAACGCACCAAAGGTGTCCGCACTTCTG GTTCACAAGGACGGGTTATCATCGAAGTCGAATAGACGAGATCTCAATATCTCGTTCGACCCTTCTCCCGATTAC CCCGGTATCGCTGCTGCAGCAGGTAAGGCGTGGGGTGCGACAGTTACCACGCGAAGCGAGCTTGATCCTGCTATC AAACAGGCAACAGAAGTTGTTCAAAGTGGGAAATGTGCTGTGGTTGAGGTTTCTGTTCCGTCTATGTGGAAAGAG AACTAG |
Gene | >Pro_DTO377G3_2|g6595.t1 ATGAAGTCGACAACTACAGTACCCCAGAAACGAAAGAAGGAAGACAGCGATGATGAGGATGATATTGTCAAAGAT GGCAGCCTCACATCCGCTGCTGACAATTTCTTCGAGGCACTGTGTATGTGATCGAAGCTTCACGCAGTCCATTGG AAAGGCTAACCTTCTTTCCAGTTGAGGCCGGTATCACATACTGCTTCGTCAACCTGTTAGTGACTGTATTAGCCA CTAATTCTATGTGTTCTGACCGGTCTGATAGAGGGAGCGACCATCCCGCGATGTTGGAAGCAATGATCAAGGCTA AGCAAGGTGAGTACCGGATATGTTACCAGCAACCAGGGCTTATTTATGATAGAAAACAAACCCAATTTTCCGAGA ATCATTACCTGCCCTTCTGAGCTAGTTGCCCTATCAGCTGCACTGGGATATGCTCAAGCTACAGGGGTTCCGGTA GATGACTACGCCCATCATATCAATTCTTTCGCTAACTTCTTGCAAGCAATGCGTAATTGTGCATGTCGACTGCGG CACTCTTGCTATGGGACAGTCCATACATAATGCCTCCGTCAGCAGAGTTCCTGTTTTGTGCTTTGCTGGTTTGAG CCCTTTTACTCAGAATGGCGAGTTGTTGGGTTCCAGAACTGAGTTAGCAAGCCAAACGAAGTAGGTTTACATGGA GCCAGCTGACTGATACTGAAGTACAGGTTCATCCATTGGCTACAAGACGTACCTGATCAAGCAGCGATTGTTCGA CAATACTGCAGATACACGGGTGAAATAAAGACCGGACGCAATATCAAACAAATGGTCTCGCGAGCTTTGCAGTTT GCTACATCTGATCCCAAAGGTCCGGCATATCTAATGGCTGCGAGAGAGGTACTCGAGGAAGTAAGTATTCGAAGT TATCGCAATAAGCCAAAATTGTCTCTAACCATATCTTATGCAGCGTGTGGGAAATGAATCTCTAGACGGTGAAAT TCTCAGTTCGATCACCCCAAGTGCATTGCCAGAGCAAGGTAGGGTGATAATTTGAGATTTGAGATTTCATATCGC TGACAGCAATAGAGGTAGAATTGATTGCCAAGTCGCTGATGAGCGCAAAGCGACCGCTTGTCATTACAAGTTATC TTGGTCGGAATCTCAAAGCGCCAGCCCTCTTAGCCGAACTTTGTGATAAACTTCCAATTACCGTCGTGGAGATGG TCGGCTCTGACGTTTGCCTCCGGAGTGACCACGAAGCATATCGCGGCGTTACCGTCACTACTCATCCGGAAGTTC TTCAAGCTGATGTTATTCTTATTCTTGATTGTGATGTGCCCTGGATTCCTACTGCTGGAAAGCCTCGGAGTGGTA AGAATGTCCAAAAAACCATGTTTCAGTGCTGTTCTGACACACACTGCAGGGGCAAGGGTATTCCATCTAGATGTC GATCCGTTGAAGCAACAGATGCCACGTAAGTTCATATATCGACCGTATTGCTGACTTTTCTCTGCTTTTTTATTA ACGATTACATATCAGTCTTTTCAATCAATGCCACTCGCAAGCTCAAGGTTGGCTGTGGAATTGCGCTTGGGCAAA TCAATGCCTTCTTGGATAAACAGGATATCGACCGGGCTAAGTATACCCTGGAGTTTGAGGAGCGGTCAACTAACT ACAAAACCTGGAGGGAAACTTTACAAGCACTTGAATCACCGTCGAAAGATGGTGTAGTCAGTGTGCCATATCTGG CATCGAGACTGCGAAAGTCTCTCCCCCAAAACACTATTTACGTTTTGGAGGCTGTAACCAATGCAGGACACCTCA TCCACCATTTGAACTTGACTAAGGTATGTATTCATGCCAATGTGCTGATTCTATGCTAATCAAATTCCAGCCGGG AAGTCTGATTGCCAGCGGCGCAGGTGGTCTAGGATGGGGAGGTGGTGCAGCACTGGGCGTCAAGCTAGGCAAGCC CGGCTCATTCATATGTGCAATGTAAGTGTTCACCAGCGCGGGAGCTCTTCCACAATATCTAATAAGCATCAGCGT CGGCGACGGAGTCTATCTATTCTCGCAGATGGAAAGCGTATATTGGATCGCCAGACGCTACAATATCCCCTTCCT CCTCGTTGTGCTTAACAATGGCGGATGGAACGCACCAAAGGTGTCCGCACTTCTGGTTCACAAGGACGGGTTATC ATCGAAGTCGAATAGACGAGGTCAGCCAGATCTAAACTAAATATCTTGTGCATAGTAGCTGATCTAGTACAGATC TCAATATCTCGTTCGACCCTTCTCCCGATTACCCCGGTATCGCTGCTGCAGCAGGTAAGGCGTGGGGTGCGACAG TTACCACGCGAAGCGAGCTTGATCCTGCTATCAAACAGGCAACAGAAGTTGTTCAAAGTGGGAAATGTGCTGTGG TTGAGGTTTCGTGAGTGGGAATAGTGGCTCTTAAGTAACAACCGCTTACTTTCATCTATAGTGTTCCGTCTATGT GGAAAGAGAACTAG |