Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g6590.t1
Gene name
Locationscaffold_17:602966..603735
Strand+
Gene length (bp)769
Transcript length (bp)696
Coding sequence length (bp)696
Protein length (aa) 232

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PFAM Domains

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 35 0.5

Transmembrane Domains

Domain # Start End Length
1 36 54 18
2 104 126 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 0.11 0.0 0.42
5d_25C Five days - 25 degrees Celsius 0.00 0.0 0.00
7d_25C Seven days - 25 degrees Celsius 0.00 0.0 0.00
10d_25C Ten days - 25 degrees Celsius 0.05 0.0 0.27
7d_15C Seven days - 15 degrees Celsius 0.00 0.0 0.00
7d_30C Seven days - 30 degrees Celsius 0.14 0.0 0.48

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 1.0 no
3d_25C 7d_25C 1.0 no
3d_25C 7d_15C 1.0 no
3d_25C 7d_30C 1.0 no
3d_25C 10d_25C 1.0 no
5d_25C 7d_25C 1.0 no
5d_25C 7d_15C 1.0 no
5d_25C 7d_30C 1.0 no
5d_25C 10d_25C 1.0 no
7d_25C 7d_15C 1.0 no
7d_25C 7d_30C 1.0 no
7d_25C 10d_25C 1.0 no
7d_15C 7d_30C 1.0 no
7d_15C 10d_25C 1.0 no
7d_30C 10d_25C 1.0 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g6590.t1
MRADIGHYARDVVNSIPSFHGQSAVGDLQLLFGNDILTIALSSFGIVGFSVWSIRRPWQRPIKKVALQGRVVFAK
SVFPTLMRASAIFATLGSLHGATRRFAICAAALQFCCSVFLSLAVVTSHIWEIRASSFGQLFTTAWALTDIARII
LLAELDETKACMGTLSSILGVKVLLLVVEEITKQNILNIPYSKYPPEALSGIINRAFVVWLNPLMWRGIAGKPLS
LPELSR*
Coding >Pro_DTO377G3_2|g6590.t1
ATGCGTGCAGATATTGGCCATTACGCCAGAGATGTCGTCAATTCTATCCCATCCTTCCACGGCCAGAGTGCTGTT
GGTGATTTGCAACTATTATTCGGTAATGATATCTTAACTATAGCGCTGTCGAGCTTTGGAATAGTCGGCTTCTCA
GTCTGGTCGATACGGAGACCGTGGCAACGTCCGATCAAGAAGGTCGCGCTCCAAGGACGTGTAGTCTTTGCGAAA
TCGGTATTTCCGACTCTCATGAGAGCTTCGGCGATCTTCGCTACACTGGGTTCGCTCCACGGCGCCACCCGACGT
TTCGCCATCTGTGCCGCAGCTCTGCAATTTTGCTGCTCGGTATTCCTTTCACTGGCAGTGGTGACCAGCCACATA
TGGGAGATTCGAGCTTCATCTTTCGGACAACTATTTACGACAGCGTGGGCACTCACGGACATCGCTCGCATTATA
CTTCTCGCCGAGTTAGACGAAACGAAGGCATGCATGGGTACCTTATCTTCTATTCTAGGAGTCAAAGTCCTACTC
CTGGTGGTTGAAGAGATCACTAAACAAAATATCTTGAATATACCCTACAGCAAATATCCGCCCGAGGCACTCAGC
GGCATTATCAACCGCGCGTTCGTTGTCTGGCTCAATCCACTCATGTGGCGGGGTATTGCTGGAAAGCCACTGTCA
CTTCCTGAGCTCTCTCGATGA
Transcript >Pro_DTO377G3_2|g6590.t1
ATGCGTGCAGATATTGGCCATTACGCCAGAGATGTCGTCAATTCTATCCCATCCTTCCACGGCCAGAGTGCTGTT
GGTGATTTGCAACTATTATTCGGTAATGATATCTTAACTATAGCGCTGTCGAGCTTTGGAATAGTCGGCTTCTCA
GTCTGGTCGATACGGAGACCGTGGCAACGTCCGATCAAGAAGGTCGCGCTCCAAGGACGTGTAGTCTTTGCGAAA
TCGGTATTTCCGACTCTCATGAGAGCTTCGGCGATCTTCGCTACACTGGGTTCGCTCCACGGCGCCACCCGACGT
TTCGCCATCTGTGCCGCAGCTCTGCAATTTTGCTGCTCGGTATTCCTTTCACTGGCAGTGGTGACCAGCCACATA
TGGGAGATTCGAGCTTCATCTTTCGGACAACTATTTACGACAGCGTGGGCACTCACGGACATCGCTCGCATTATA
CTTCTCGCCGAGTTAGACGAAACGAAGGCATGCATGGGTACCTTATCTTCTATTCTAGGAGTCAAAGTCCTACTC
CTGGTGGTTGAAGAGATCACTAAACAAAATATCTTGAATATACCCTACAGCAAATATCCGCCCGAGGCACTCAGC
GGCATTATCAACCGCGCGTTCGTTGTCTGGCTCAATCCACTCATGTGGCGGGGTATTGCTGGAAAGCCACTGTCA
CTTCCTGAGCTCTCTCGATGA
Gene >Pro_DTO377G3_2|g6590.t1
ATGCGTGCAGATATTGGCCATTACGCCAGAGATGTCGTCAATTCTATCCCATCCTTCCACGGCCAGAGTGCTGTT
GGTGATTTGCAACTATTATTCGGTAATGATATCTTAACTATAGCGCTGTCGAGCTTTGGAATAGTCGGCTTCTCA
GTCTGGTCGATACGGAGACCGTGGCAACGTCCGATCAAGAAGGTCGCGCTCCAAGGACGTGTAGTCTTTGCGAAA
TCGGTATTTCCGACTCTCATGAGAGCTTCGGCGATCTGTATGATAACCTTTCTTTAGTTAGATACTTTGCACTCT
CTTGGTGCTTTTGTATATCGCATACCTTATCACAGTCGCTACACTGGGTTCGCTCCACGGCGCCACCCGACGTTT
CGCCATCTGTGCCGCAGCTCTGCAATTTTGCTGCTCGGTATTCCTTTCACTGGCAGTGGTGACCAGCCACATATG
GGAGATTCGAGCTTCATCTTTCGGACAACTATTTACGACAGCGTGGGCACTCACGGACATCGCTCGCATTATACT
TCTCGCCGAGTTAGACGAAACGAAGGCATGCATGGGTACCTTATCTTCTATTCTAGGAGTCAAAGTCCTACTCCT
GGTGGTTGAAGAGATCACTAAACAAAATATCTTGAATATACCCTACAGCAAATATCCGCCCGAGGCACTCAGCGG
CATTATCAACCGCGCGTTCGTTGTCTGGCTCAATCCACTCATGTGGCGGGGTATTGCTGGAAAGCCACTGTCACT
TCCTGAGCTCTCTCGATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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