Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g6590.t1
Gene name
Locationscaffold_17:602966..603735
Strand+
Gene length (bp)769
Transcript length (bp)696
Coding sequence length (bp)696
Protein length (aa) 232

Overview

Your browser does not support drawing a protein figure.

PFAM Domains

(None)

GO

(None)

Deeploc

Deeploc data not available for this genome

SignalP

(None)

Transmembrane Domains

Domain # Start End Length
1 36 54 18
2 104 126 22

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 0.11 0.0 0.42
5d_25C Five days - 25 degrees Celsius 0.00 0.0 0.00
7d_25C Seven days - 25 degrees Celsius 0.00 0.0 0.00
10d_25C Ten days - 25 degrees Celsius 0.05 0.0 0.27
7d_15C Seven days - 15 degrees Celsius 0.00 0.0 0.00
7d_30C Seven days - 30 degrees Celsius 0.14 0.0 0.48

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 1.0 no
3d_25C 7d_25C 1.0 no
3d_25C 7d_15C 1.0 no
3d_25C 7d_30C 1.0 no
3d_25C 10d_25C 1.0 no
5d_25C 7d_25C 1.0 no
5d_25C 7d_15C 1.0 no
5d_25C 7d_30C 1.0 no
5d_25C 10d_25C 1.0 no
7d_25C 7d_15C 1.0 no
7d_25C 7d_30C 1.0 no
7d_25C 10d_25C 1.0 no
7d_15C 7d_30C 1.0 no
7d_15C 10d_25C 1.0 no
7d_30C 10d_25C 1.0 no

Orthologs

Orthofinder run ID2
Orthogroup9865
Change Orthofinder run
Species Protein ID
Penicillium roqueforti DTO002I6 Pro_DTO002I6_2|g7309.t1
Penicillium roqueforti DTO006G1 Pro_DTO006G1_2|g8195.t1
Penicillium roqueforti DTO006G7 Pro_DTO006G7_3|g917.t1
Penicillium roqueforti DTO012A6 (CBS 147310) Pro_DTO012A6_2|g9573.t1
Penicillium roqueforti DTO012A7 Pro_DTO012A7_2|g1725.t1
Penicillium roqueforti DTO012A9 Pro_DTO012A9_2|g7689.t1
Penicillium roqueforti DTO013F5 (CBS 147311) Pro_DTO013F5_2|g8119.t1
Penicillium roqueforti DTO027I6 Pro_DTO027I6_2|g9805.t1
Penicillium roqueforti DTO039G3 Pro_DTO039G3_2|g9696.t1
Penicillium roqueforti DTO081F9 (CBS 147318) Pro_DTO081F9_2|g6534.t1
Penicillium roqueforti DTO102I9 (CBS 147326) Pro_DTO102I9_2|g6561.t1
Penicillium roqueforti DTO126G2 (CBS 147330) Pro_DTO126G2_2|g1986.t1
Penicillium roqueforti DTO163C3 (CBS 147337) Pro_DTO163C3_2|g9866.t1
Penicillium roqueforti DTO375B1 (CBS 147355) Pro_DTO375B1_2|g9754.t1
Penicillium roqueforti DTO377G2 (LCP 96.3914a) Pro_DTO377G2_2|g7276.t1
Penicillium roqueforti LCP96 04111 Pro_DTO377G3_2|g6590.t1 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g6590.t1
MRADIGHYARDVVNSIPSFHGQSAVGDLQLLFGNDILTIALSSFGIVGFSVWSIRRPWQRPIKKVALQGRVVFAK
SVFPTLMRASAIFATLGSLHGATRRFAICAAALQFCCSVFLSLAVVTSHIWEIRASSFGQLFTTAWALTDIARII
LLAELDETKACMGTLSSILGVKVLLLVVEEITKQNILNIPYSKYPPEALSGIINRAFVVWLNPLMWRGIAGKPLS
LPELSR*
Coding >Pro_DTO377G3_2|g6590.t1
ATGCGTGCAGATATTGGCCATTACGCCAGAGATGTCGTCAATTCTATCCCATCCTTCCACGGCCAGAGTGCTGTT
GGTGATTTGCAACTATTATTCGGTAATGATATCTTAACTATAGCGCTGTCGAGCTTTGGAATAGTCGGCTTCTCA
GTCTGGTCGATACGGAGACCGTGGCAACGTCCGATCAAGAAGGTCGCGCTCCAAGGACGTGTAGTCTTTGCGAAA
TCGGTATTTCCGACTCTCATGAGAGCTTCGGCGATCTTCGCTACACTGGGTTCGCTCCACGGCGCCACCCGACGT
TTCGCCATCTGTGCCGCAGCTCTGCAATTTTGCTGCTCGGTATTCCTTTCACTGGCAGTGGTGACCAGCCACATA
TGGGAGATTCGAGCTTCATCTTTCGGACAACTATTTACGACAGCGTGGGCACTCACGGACATCGCTCGCATTATA
CTTCTCGCCGAGTTAGACGAAACGAAGGCATGCATGGGTACCTTATCTTCTATTCTAGGAGTCAAAGTCCTACTC
CTGGTGGTTGAAGAGATCACTAAACAAAATATCTTGAATATACCCTACAGCAAATATCCGCCCGAGGCACTCAGC
GGCATTATCAACCGCGCGTTCGTTGTCTGGCTCAATCCACTCATGTGGCGGGGTATTGCTGGAAAGCCACTGTCA
CTTCCTGAGCTCTCTCGATGA
Transcript >Pro_DTO377G3_2|g6590.t1
ATGCGTGCAGATATTGGCCATTACGCCAGAGATGTCGTCAATTCTATCCCATCCTTCCACGGCCAGAGTGCTGTT
GGTGATTTGCAACTATTATTCGGTAATGATATCTTAACTATAGCGCTGTCGAGCTTTGGAATAGTCGGCTTCTCA
GTCTGGTCGATACGGAGACCGTGGCAACGTCCGATCAAGAAGGTCGCGCTCCAAGGACGTGTAGTCTTTGCGAAA
TCGGTATTTCCGACTCTCATGAGAGCTTCGGCGATCTTCGCTACACTGGGTTCGCTCCACGGCGCCACCCGACGT
TTCGCCATCTGTGCCGCAGCTCTGCAATTTTGCTGCTCGGTATTCCTTTCACTGGCAGTGGTGACCAGCCACATA
TGGGAGATTCGAGCTTCATCTTTCGGACAACTATTTACGACAGCGTGGGCACTCACGGACATCGCTCGCATTATA
CTTCTCGCCGAGTTAGACGAAACGAAGGCATGCATGGGTACCTTATCTTCTATTCTAGGAGTCAAAGTCCTACTC
CTGGTGGTTGAAGAGATCACTAAACAAAATATCTTGAATATACCCTACAGCAAATATCCGCCCGAGGCACTCAGC
GGCATTATCAACCGCGCGTTCGTTGTCTGGCTCAATCCACTCATGTGGCGGGGTATTGCTGGAAAGCCACTGTCA
CTTCCTGAGCTCTCTCGATGA
Gene >Pro_DTO377G3_2|g6590.t1
ATGCGTGCAGATATTGGCCATTACGCCAGAGATGTCGTCAATTCTATCCCATCCTTCCACGGCCAGAGTGCTGTT
GGTGATTTGCAACTATTATTCGGTAATGATATCTTAACTATAGCGCTGTCGAGCTTTGGAATAGTCGGCTTCTCA
GTCTGGTCGATACGGAGACCGTGGCAACGTCCGATCAAGAAGGTCGCGCTCCAAGGACGTGTAGTCTTTGCGAAA
TCGGTATTTCCGACTCTCATGAGAGCTTCGGCGATCTGTATGATAACCTTTCTTTAGTTAGATACTTTGCACTCT
CTTGGTGCTTTTGTATATCGCATACCTTATCACAGTCGCTACACTGGGTTCGCTCCACGGCGCCACCCGACGTTT
CGCCATCTGTGCCGCAGCTCTGCAATTTTGCTGCTCGGTATTCCTTTCACTGGCAGTGGTGACCAGCCACATATG
GGAGATTCGAGCTTCATCTTTCGGACAACTATTTACGACAGCGTGGGCACTCACGGACATCGCTCGCATTATACT
TCTCGCCGAGTTAGACGAAACGAAGGCATGCATGGGTACCTTATCTTCTATTCTAGGAGTCAAAGTCCTACTCCT
GGTGGTTGAAGAGATCACTAAACAAAATATCTTGAATATACCCTACAGCAAATATCCGCCCGAGGCACTCAGCGG
CATTATCAACCGCGCGTTCGTTGTCTGGCTCAATCCACTCATGTGGCGGGGTATTGCTGGAAAGCCACTGTCACT
TCCTGAGCTCTCTCGATGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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