© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g6550.t1 |
| Gene name | |
| Location | scaffold_17:497920..499754 |
| Strand | - |
| Gene length (bp) | 1834 |
| Transcript length (bp) | 1674 |
| Coding sequence length (bp) | 1674 |
| Protein length (aa) | 558 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01424 | R3H | R3H domain | 2.1E-10 | 262 | 318 |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.3E-05 | 113 | 183 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0003676 | nucleic acid binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 55 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 46.30 | 27.75 | 64.86 |
| 5d_25C | Five days - 25 degrees Celsius | 41.00 | 24.14 | 57.86 |
| 7d_25C | Seven days - 25 degrees Celsius | 45.91 | 27.04 | 64.78 |
| 10d_25C | Ten days - 25 degrees Celsius | 45.70 | 27.25 | 64.15 |
| 7d_15C | Seven days - 15 degrees Celsius | 41.40 | 23.90 | 58.89 |
| 7d_30C | Seven days - 30 degrees Celsius | 53.40 | 32.02 | 74.77 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.677029 | no |
| 3d_25C | 7d_25C | 0.981265 | no |
| 3d_25C | 7d_15C | 0.705175 | no |
| 3d_25C | 7d_30C | 0.606329 | no |
| 3d_25C | 10d_25C | 0.971829 | no |
| 5d_25C | 7d_25C | 0.700784 | no |
| 5d_25C | 7d_15C | 0.981033 | no |
| 5d_25C | 7d_30C | 0.273650 | no |
| 5d_25C | 10d_25C | 0.712979 | no |
| 7d_25C | 7d_15C | 0.733225 | no |
| 7d_25C | 7d_30C | 0.583046 | no |
| 7d_25C | 10d_25C | 0.990283 | no |
| 7d_15C | 7d_30C | 0.297406 | no |
| 7d_15C | 10d_25C | 0.740103 | no |
| 7d_30C | 10d_25C | 0.570699 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g6550.t1 MYEQDQMRYESARLERLNPSLQNNYGYDISGSQTWNPNGFANAQALGGIRSASASLKPNARGRAGLPTTWLDQQP NMPQAFSNLGPGPIQSSAMRPEASASSADDDELIPTAIVIKNIPFAVKKEQLVQLMTELNLPLPYAFNYHFDNGV FRGLAFANFTSAEETATVIEVLNHFELQGRKLRVEYKKMLPLQERERIEREKRERRGQLEEQHRPMGGGPQLQTQ SSMSSLTSHIPATSPSPVSQRGQKIDVDLNDTQTLSYYSQLLLFKEDTVRDSVIFPHNLTPSQRRTVHTLAHNMG LGHASRGSGEQRQVQVFKIAAGANVSPPTSSIPPSGQSDSGRRGLNRAATIDFGEARQEAGPGTFNTLRGQNSGF LGVMDSPGNFANGQNLRAAKSFADLRSYTPSPVPSSASFPAALQSNGARLQYEGAPTGTSNTPTLTPVQSGSSLG MQRDDNLLVNSLGGLSLGTGIGGPNSSPRRLRGMFSWEQDSQQSNAGAIGSNRGMGMGYDGQQERMPVRQPRGPT PDKGPGFRRQNGHQSRGSDELRTNSGVEIIVE* |
| Coding | >Pro_DTO377G3_2|g6550.t1 ATGTATGAGCAAGATCAGATGCGTTACGAGTCCGCTCGCCTCGAACGCTTGAACCCGTCCTTGCAGAACAACTAC GGATATGATATATCTGGCTCGCAGACTTGGAACCCCAACGGGTTTGCCAATGCTCAAGCTCTCGGAGGAATCCGC TCGGCCTCCGCCAGTTTGAAGCCTAATGCCCGTGGACGTGCCGGCCTCCCCACGACTTGGTTGGATCAGCAACCG AATATGCCCCAAGCATTTTCGAATTTGGGCCCTGGTCCCATTCAGAGCAGCGCGATGCGACCGGAAGCCTCCGCG TCCTCTGCAGATGACGATGAATTGATCCCAACCGCGATTGTCATCAAGAATATCCCCTTTGCCGTAAAGAAGGAA CAGTTGGTACAGTTGATGACGGAACTCAACCTCCCCCTGCCCTACGCATTTAACTATCACTTTGACAATGGTGTC TTCCGTGGTCTGGCCTTTGCCAACTTCACTTCCGCCGAGGAAACAGCAACCGTGATCGAGGTGCTCAACCACTTT GAGCTACAGGGTCGGAAATTGCGAGTCGAATACAAGAAGATGCTTCCCCTGCAGGAGCGCGAACGGATCGAGCGT GAGAAGCGGGAACGCCGTGGCCAGTTGGAAGAACAGCACCGCCCGATGGGAGGTGGTCCACAGCTCCAGACGCAG AGCTCCATGTCTTCACTCACCTCGCACATCCCGGCCACCTCCCCTTCGCCCGTGTCCCAGCGTGGCCAAAAAATT GATGTGGACTTGAACGACACCCAGACCCTTTCCTACTACTCCCAACTACTCCTGTTTAAGGAAGATACTGTCCGC GATTCCGTGATCTTCCCCCACAACCTCACCCCCTCTCAGCGTCGCACGGTTCACACCCTGGCCCACAACATGGGC TTGGGACATGCTTCACGTGGTAGCGGCGAACAGCGCCAGGTGCAAGTCTTTAAGATCGCCGCAGGTGCCAATGTC AGCCCCCCGACGTCCTCAATCCCGCCCTCTGGCCAGTCAGACAGTGGTCGTCGCGGCCTTAACCGGGCGGCGACC ATCGACTTCGGCGAGGCTCGCCAAGAGGCTGGCCCTGGCACTTTCAACACCTTGCGTGGACAGAACTCGGGCTTT CTGGGCGTGATGGACTCTCCTGGCAACTTCGCCAACGGCCAGAACCTACGGGCTGCCAAGTCCTTTGCCGACCTG AGATCTTACACTCCTTCGCCCGTGCCTTCCTCCGCTAGCTTCCCCGCCGCGTTGCAGTCCAACGGCGCCCGCCTC CAGTATGAGGGTGCGCCCACTGGTACTTCCAACACCCCGACCCTCACCCCTGTCCAGTCTGGCTCCTCTCTTGGC ATGCAGCGTGATGACAACCTGCTGGTCAACAGCCTGGGTGGTCTCTCCCTCGGCACCGGTATCGGTGGCCCCAAC TCGAGCCCTCGTCGCTTAAGAGGCATGTTCTCTTGGGAGCAGGACAGCCAGCAATCCAACGCTGGCGCCATTGGA AGCAACCGTGGCATGGGTATGGGATATGACGGCCAGCAGGAGCGCATGCCCGTCCGCCAACCCCGCGGCCCGACC CCCGACAAGGGCCCCGGGTTTCGCCGTCAGAACGGCCACCAAAGCCGCGGAAGTGATGAACTCCGCACCAACTCC GGAGTAGAGATCATTGTGGAGTAG |
| Transcript | >Pro_DTO377G3_2|g6550.t1 ATGTATGAGCAAGATCAGATGCGTTACGAGTCCGCTCGCCTCGAACGCTTGAACCCGTCCTTGCAGAACAACTAC GGATATGATATATCTGGCTCGCAGACTTGGAACCCCAACGGGTTTGCCAATGCTCAAGCTCTCGGAGGAATCCGC TCGGCCTCCGCCAGTTTGAAGCCTAATGCCCGTGGACGTGCCGGCCTCCCCACGACTTGGTTGGATCAGCAACCG AATATGCCCCAAGCATTTTCGAATTTGGGCCCTGGTCCCATTCAGAGCAGCGCGATGCGACCGGAAGCCTCCGCG TCCTCTGCAGATGACGATGAATTGATCCCAACCGCGATTGTCATCAAGAATATCCCCTTTGCCGTAAAGAAGGAA CAGTTGGTACAGTTGATGACGGAACTCAACCTCCCCCTGCCCTACGCATTTAACTATCACTTTGACAATGGTGTC TTCCGTGGTCTGGCCTTTGCCAACTTCACTTCCGCCGAGGAAACAGCAACCGTGATCGAGGTGCTCAACCACTTT GAGCTACAGGGTCGGAAATTGCGAGTCGAATACAAGAAGATGCTTCCCCTGCAGGAGCGCGAACGGATCGAGCGT GAGAAGCGGGAACGCCGTGGCCAGTTGGAAGAACAGCACCGCCCGATGGGAGGTGGTCCACAGCTCCAGACGCAG AGCTCCATGTCTTCACTCACCTCGCACATCCCGGCCACCTCCCCTTCGCCCGTGTCCCAGCGTGGCCAAAAAATT GATGTGGACTTGAACGACACCCAGACCCTTTCCTACTACTCCCAACTACTCCTGTTTAAGGAAGATACTGTCCGC GATTCCGTGATCTTCCCCCACAACCTCACCCCCTCTCAGCGTCGCACGGTTCACACCCTGGCCCACAACATGGGC TTGGGACATGCTTCACGTGGTAGCGGCGAACAGCGCCAGGTGCAAGTCTTTAAGATCGCCGCAGGTGCCAATGTC AGCCCCCCGACGTCCTCAATCCCGCCCTCTGGCCAGTCAGACAGTGGTCGTCGCGGCCTTAACCGGGCGGCGACC ATCGACTTCGGCGAGGCTCGCCAAGAGGCTGGCCCTGGCACTTTCAACACCTTGCGTGGACAGAACTCGGGCTTT CTGGGCGTGATGGACTCTCCTGGCAACTTCGCCAACGGCCAGAACCTACGGGCTGCCAAGTCCTTTGCCGACCTG AGATCTTACACTCCTTCGCCCGTGCCTTCCTCCGCTAGCTTCCCCGCCGCGTTGCAGTCCAACGGCGCCCGCCTC CAGTATGAGGGTGCGCCCACTGGTACTTCCAACACCCCGACCCTCACCCCTGTCCAGTCTGGCTCCTCTCTTGGC ATGCAGCGTGATGACAACCTGCTGGTCAACAGCCTGGGTGGTCTCTCCCTCGGCACCGGTATCGGTGGCCCCAAC TCGAGCCCTCGTCGCTTAAGAGGCATGTTCTCTTGGGAGCAGGACAGCCAGCAATCCAACGCTGGCGCCATTGGA AGCAACCGTGGCATGGGTATGGGATATGACGGCCAGCAGGAGCGCATGCCCGTCCGCCAACCCCGCGGCCCGACC CCCGACAAGGGCCCCGGGTTTCGCCGTCAGAACGGCCACCAAAGCCGCGGAAGTGATGAACTCCGCACCAACTCC GGAGTAGAGATCATTGTGGAGTAG |
| Gene | >Pro_DTO377G3_2|g6550.t1 ATGTATGAGCAAGATCAGATGCGTTACGAGTCCGCTCGCCTCGAACGCTTGAACCCGTCCTTGCAGAACAACTAC GGATATGATATATCTGGCTCGCAGACTTGGAACCCCAACGGGTTTGCCAATGCTCAAGCTCTCGGAGGAATCCGC TCGGCCTCCGCCAGTTTGAAGCCTAATGCCCGTGGACGTGCCGGCCTCCCCACGGTATGTTTGATCTTATCCGAC AATGGACCCCCTCGTCCAAAGGTACGAAAAAGGCGAAAAAGGAAAAAAGTACTAACAGGCTTCTCCAGACTTGGT TGGATCAGCAACCGAATATGCCCCAAGCATTTTCGAATTTGGGCCCTGGTCCCATTCAGAGCAGCGCGATGCGAC CGGAAGCCTCCGCGTCCTCTGCAGATGACGATGAATTGATCCCAACCGCGATTGTCATCAAGAATATCCCCTTTG CCGTAAAGAAGGAACAGTTGGTACAGTTGATGACGGAACTCAACCTCCCCCTGCCCTACGCATTTAACTATCACT TTGACAATGGTGTCTTCCGTGGTCTGGCCTTTGCCAACTTCACTTCCGCCGAGGAAACAGCAACCGTGATCGAGG TGCTCAACCACTTTGAGCTACAGGGTCGGAAATTGCGAGTCGAATACAAGAAGATGCTTCCCCTGCAGGAGCGCG AACGGATCGAGCGTGAGAAGCGGGAACGCCGTGGCCAGTTGGAAGAACAGCACCGCCCGATGGGAGGTGGTCCAC AGCTCCAGACGCAGAGCTCCATGTCTTCACTCACCTCGCACATCCCGGCCACCTCCCCTTCGCCCGTGTCCCAGC GTGGCCAAAAAATTGGTGCGTTAACACATTCGTTTTAAGGTTATTGAAATCTCGACCTGTCGCTAACCATGTCTT TTTTAATACAGATGTGGACTTGAACGACACCCAGACCCTTTCCTACTACTCCCAACTACTCCTGTTTAAGGAAGA TACTGTCCGCGATTCCGTGATCTTCCCCCACAACCTCACCCCCTCTCAGCGTCGCACGGTTCACACCCTGGCCCA CAACATGGGCTTGGGACATGCTTCACGTGGTAGCGGCGAACAGCGCCAGGTGCAAGTCTTTAAGATCGCCGCAGG TGCCAATGTCAGCCCCCCGACGTCCTCAATCCCGCCCTCTGGCCAGTCAGACAGTGGTCGTCGCGGCCTTAACCG GGCGGCGACCATCGACTTCGGCGAGGCTCGCCAAGAGGCTGGCCCTGGCACTTTCAACACCTTGCGTGGACAGAA CTCGGGCTTTCTGGGCGTGATGGACTCTCCTGGCAACTTCGCCAACGGCCAGAACCTACGGGCTGCCAAGTCCTT TGCCGACCTGAGATCTTACACTCCTTCGCCCGTGCCTTCCTCCGCTAGCTTCCCCGCCGCGTTGCAGTCCAACGG CGCCCGCCTCCAGTATGAGGGTGCGCCCACTGGTACTTCCAACACCCCGACCCTCACCCCTGTCCAGTCTGGCTC CTCTCTTGGCATGCAGCGTGATGACAACCTGCTGGTCAACAGCCTGGGTGGTCTCTCCCTCGGCACCGGTATCGG TGGCCCCAACTCGAGCCCTCGTCGCTTAAGAGGCATGTTCTCTTGGGAGCAGGACAGCCAGCAATCCAACGCTGG CGCCATTGGAAGCAACCGTGGCATGGGTATGGGATATGACGGCCAGCAGGAGCGCATGCCCGTCCGCCAACCCCG CGGCCCGACCCCCGACAAGGGCCCCGGGTTTCGCCGTCAGAACGGCCACCAAAGCCGCGGAAGTGATGAACTCCG CACCAACTCCGGAGTAGAGATCATTGTGGAGTAG |